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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export("bcaption<-")
export("bheader<-")
export("boutput<-")
export("bresults<-")
export(apply_trim_values)
export(bcaption)
export(bforest)
export(bheader)
export(bkable)
export(boutput)
export(bresults)
export(compute_lower_whisker)
export(compute_trim_values)
export(compute_upper_whisker)
export(csv2eSet)
export(cut2)
export(densVals)
export(duplicated2)
export(eSet2csv)
export(fig.rename)
export(format_colors)
export(format_colors_cat)
export(format_colors_cat_strata)
export(format_colors_num)
export(format_shapes)
export(format_variable_names)
export(isValidAndUnreservedName)
export(jaccard_matrix)
export(lower95CI)
export(lowerQ)
export(lowerSE)
export(or_matrix)
export(order2)
export(subchunkify)
export(upper95CI)
export(upperQ)
export(upperSE)
export(wrapper_HR_dotplot)
export(wrapper_KM_plot_biomarker)
export(wrapper_KM_plot_core)
export(wrapper_KM_plot_core_strat)
export(wrapper_KM_plot_interaction)
export(wrapper_KM_plot_treatment)
export(wrapper_NES_barplot)
export(wrapper_NES_barplot2)
export(wrapper_bar_plot_biomarker)
export(wrapper_bar_plot_core)
export(wrapper_bar_plot_core_strat)
export(wrapper_bar_plot_treatment)
export(wrapper_bar_plot_yvars_core_strat)
export(wrapper_box_plot_core)
export(wrapper_box_plot_core_strat)
export(wrapper_box_plot_yvars_core_strat)
export(wrapper_bresults_to_topTable)
export(wrapper_calculate_sample_logFC)
export(wrapper_cameraPR)
export(wrapper_cameraPR_core)
export(wrapper_characteristics_bep)
export(wrapper_characteristics_core)
export(wrapper_characteristics_core_cat)
export(wrapper_characteristics_core_num)
export(wrapper_cooccurence_dotplot)
export(wrapper_cooccurence_heatmap)
export(wrapper_cox_regression_biomarker)
export(wrapper_cox_regression_core_interaction)
export(wrapper_cox_regression_core_interaction_strat)
export(wrapper_cox_regression_core_simple)
export(wrapper_cox_regression_core_simple_strat)
export(wrapper_cox_regression_interaction)
export(wrapper_cox_regression_treatment)
export(wrapper_cut_2groups)
export(wrapper_cut_2groups_strat)
export(wrapper_cut_median)
export(wrapper_cut_median_strat)
export(wrapper_cut_quartiles)
export(wrapper_cut_quartiles_strat)
export(wrapper_cut_quintiles)
export(wrapper_cut_quintiles_strat)
export(wrapper_cut_tertiles)
export(wrapper_cut_tertiles_strat)
export(wrapper_deside_tests)
export(wrapper_dispaly_significant_camera)
export(wrapper_dispaly_significant_genes)
export(wrapper_dispaly_significant_gsea)
export(wrapper_dispaly_significant_ora)
export(wrapper_error_line_plot_core)
export(wrapper_error_line_plot_core_strat)
export(wrapper_extract_from_topTable)
export(wrapper_fishers_test)
export(wrapper_fishers_test_core)
export(wrapper_fishers_test_core_strat)
export(wrapper_gene_expression_heatmap)
export(wrapper_gsea)
export(wrapper_gsea_core)
export(wrapper_gsea_plot)
export(wrapper_gsea_plot_core)
export(wrapper_kruskal_test)
export(wrapper_kruskal_test_core_col_cat)
export(wrapper_kruskal_test_core_col_cat_strat)
export(wrapper_kruskal_test_core_col_num)
export(wrapper_kruskal_test_core_col_num_strat)
export(wrapper_line_plot_core)
export(wrapper_line_plot_core_strat)
export(wrapper_lm)
export(wrapper_lmer)
export(wrapper_logFC_dotplot)
export(wrapper_logFC_heatmap)
export(wrapper_log_rank_test_biomarker)
export(wrapper_log_rank_test_core_simple)
export(wrapper_log_rank_test_core_simple_strat)
export(wrapper_log_rank_test_treatment)
export(wrapper_logistic_regression_biomarker)
export(wrapper_logistic_regression_core_interaction)
export(wrapper_logistic_regression_core_interaction_strat)
export(wrapper_logistic_regression_core_simple)
export(wrapper_logistic_regression_core_simple_strat)
export(wrapper_logistic_regression_interaction)
export(wrapper_logistic_regression_treatment)
export(wrapper_max_text_height)
export(wrapper_max_text_width)
export(wrapper_merge_topTables)
export(wrapper_ncc_cox_regression_core_predictive)
export(wrapper_ncc_cox_regression_core_predictive2)
export(wrapper_ncc_cox_regression_core_prognostic)
export(wrapper_ora)
export(wrapper_ora_core)
export(wrapper_ora_dotplot_multiple)
export(wrapper_ora_dotplot_single)
export(wrapper_pearsons_test_biomarker)
export(wrapper_pearsons_test_core)
export(wrapper_pearsons_test_core_strat)
export(wrapper_pearsons_test_treatment)
export(wrapper_point_plot_core)
export(wrapper_point_plot_core_strat)
export(wrapper_print_plot_grid)
export(wrapper_read_gmt)
export(wrapper_renumber_clusters)
export(wrapper_signature_heatmap)
export(wrapper_summarized_expression_dotplot)
export(wrapper_summarized_expression_heatmap)
export(wrapper_tile_plot1_core)
export(wrapper_tile_plot2_core)
export(wrapper_write_gmt)
exportMethods("$")
exportMethods("[")
exportMethods("[[")
exportMethods("bcaption<-")
exportMethods("bheader<-")
exportMethods("boutput<-")
exportMethods("bresults<-")
exportMethods("colnames<-")
exportMethods("rownames<-")
exportMethods(bcaption)
exportMethods(bforest)
exportMethods(bheader)
exportMethods(bkable)
exportMethods(boutput)
exportMethods(bresults)
exportMethods(cbind)
exportMethods(colnames)
exportMethods(dim)
exportMethods(ncol)
exportMethods(nrow)
exportMethods(rbind)
exportMethods(rownames)
import(ComplexHeatmap)
import(ggplot2)
import(kableExtra)
import(methods)
import(stats)
import(survival)
importFrom(cowplot,background_grid)
importFrom(cowplot,get_legend)
importFrom(cowplot,panel_border)
importFrom(cowplot,plot_grid)
importFrom(dplyr,everything)
importFrom(dplyr,mutate_all)
importFrom(dplyr,mutate_at)
importFrom(ggpp,geom_table_npc)
importFrom(ggpp,ttheme_gtminimal)
importFrom(grid,gpar)
importFrom(magrittr,"%>%")
importFrom(plyr,rbind.fill)
importFrom(plyr,rbind.fill.matrix)
importFrom(rlang,.data)
importFrom(tibble,tibble)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)