DESCRIPTION

Package: BiomarkerWrappers
Type: Package
Title: Suite of wrapper functions for exploratory biomarker analysis
Version: 0.0.0.60
Authors@R: 
    person(given = "Malgorzata",
           family = "Nowicka",
           role = c("aut", "cre"),
           email = "gosianowicka87@gmail.com")
Description: What the package does (one paragraph).
biocViews: WorkflowStep
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5)
Imports: ggplot2, rlang, tidyr, plyr, dplyr, magrittr, cowplot, RColorBrewer, grDevices, grid, circlize, ComplexHeatmap, ggbeeswarm, ggnewscale, survival, survminer, forestplot, utils, stats, methods, knitr, kableExtra, fgsea, lme4, multcomp, limma, Biobase, GSEABase, scales, stringr, tools, multipleNCC, ggpp
Suggests: BiocStyle, testthat, rmarkdown, SummarizedExperiment, edgeR, msigdbr, corrplot, tibble
VignetteBuilder: knitr
RoxygenNote: 7.3.1
Collate: 
    'BiomarkerWrappers.R'
    'class_Bclass.R'
    'class_BclassCharacteristics.R'
    'class_BclassDE.R'
    'class_BclassTesting.R'
    'generate_test_data.R'
    'helper_functions.R'
    'wrappers_CAMERA.R'
    'wrappers_DE.R'
    'wrappers_GSEA.R'
    'wrappers_GSEA_plot.R'
    'wrappers_HR_plot.R'
    'wrappers_cox_regression.R'
    'wrappers_KM_plot.R'
    'wrappers_NES_plot.R'
    'wrappers_ORA.R'
    'wrappers_ORA_plot.R'
    'wrappers_bar_plot.R'
    'wrappers_box_plot.R'
    'wrappers_characteristics.R'
    'wrappers_logFC_plot.R'
    'wrappers_cooccurrence.R'
    'wrappers_error_line_plot.R'
    'wrappers_fishers_test.R'
    'wrappers_gene_expression_plot.R'
    'wrappers_kruskal_test.R'
    'wrappers_line_plot.R'
    'wrappers_log_rank_test.R'
    'wrappers_logistic_regression.R'
    'wrappers_ncc_cox_regression.R'
    'wrappers_pearsons_test.R'
    'wrappers_point_plot.R'
    'wrappers_signature_plot.R'
    'wrappers_summarized_expression_plot.R'
    'wrappers_tile_plot.R'