Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add nucleus designation/attribution column to the later-stage output files #421

Open
vreuter opened this issue Jan 27, 2025 · 0 comments
Open
Assignees
Labels
enhancement New feature or request pipeline
Milestone

Comments

@vreuter
Copy link
Collaborator

vreuter commented Jan 27, 2025

Would be useful as a grouping unit to have the designation of which nucleus (i.e., cell) a record comes from be present in some later output files (e.g., the pairwise distances and the final traces). This could be accomplished with a join back to the original table with nucleus ID (on something like ROI ID), or by propagating the nucleus label through various steps, parsing it as part of each input record and emitting it back as part of each output record. Preference for the first since it makes each component more modular. NB: nucleus number is only unique per FOV, not globally across all fields of view for an entire experiment.

@vreuter vreuter added enhancement New feature or request pipeline labels Jan 27, 2025
@vreuter vreuter self-assigned this Jan 27, 2025
@vreuter vreuter added this to the v0.14 milestone Jan 27, 2025
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request pipeline
Projects
None yet
Development

No branches or pull requests

1 participant