From 45d43b93b340246ae0869b6883cef12cfaaf39d9 Mon Sep 17 00:00:00 2001
From: Michael Schubert <mschu.dev@gmail.com>
Date: Sun, 26 Jan 2025 15:50:33 +0000
Subject: [PATCH] dev-python/pyBigWig: version bump 0.3.24, add tests, remove
 outdated ebuilds

Signed-off-by: Michael Schubert <mschu.dev@gmail.com>
---
 dev-python/pyBigWig/Manifest               |  3 +-
 dev-python/pyBigWig/pyBigWig-0.3.17.ebuild | 25 -----------------
 dev-python/pyBigWig/pyBigWig-0.3.18.ebuild | 25 -----------------
 dev-python/pyBigWig/pyBigWig-0.3.24.ebuild | 32 ++++++++++++++++++++++
 dev-python/pyBigWig/pyBigWig-9999.ebuild   | 25 -----------------
 5 files changed, 33 insertions(+), 77 deletions(-)
 delete mode 100644 dev-python/pyBigWig/pyBigWig-0.3.17.ebuild
 delete mode 100644 dev-python/pyBigWig/pyBigWig-0.3.18.ebuild
 create mode 100644 dev-python/pyBigWig/pyBigWig-0.3.24.ebuild
 delete mode 100644 dev-python/pyBigWig/pyBigWig-9999.ebuild

diff --git a/dev-python/pyBigWig/Manifest b/dev-python/pyBigWig/Manifest
index b27a43a9b4b..4871f84021f 100644
--- a/dev-python/pyBigWig/Manifest
+++ b/dev-python/pyBigWig/Manifest
@@ -1,2 +1 @@
-DIST pyBigWig-0.3.17.tar.gz 65490 BLAKE2B 5ae3ad5792357ae36082022aa34548fb7ad105909eccc27305064f8f948714f462e1d239c3af7f9b75b84f5658bcb03231d7d1d3b0ebc8025c96d2e7835f1bfb SHA512 b52fec3a85984708660dd454f5569900a5cce7804d02e719bddbdc7ed2f9f4ab1131e55b0a01ae977b18bb0bbd079e13ec887d5df108d8abfebdd04ad56e503f
-DIST pyBigWig-0.3.18.tar.gz 66478 BLAKE2B 0d2e20bed5f59fb8c79026f453c4d5c3e4f9b663e96614b3ef8cbb939357c8895edfa92184da018efdd40e14bbf357f13cc32f898d9cf89419382e7be89b01c8 SHA512 e782f059a8c47043498b2c4b1c0b63f3a1863d03f641c469995536bded220714c61fe0a2f1dbe5841152fe54d0d43b544e14ec4999447d4d808e01b452fa5e88
+DIST pyBigWig-0.3.24.tar.gz 67280 BLAKE2B 3c6b0129eaf82d848d6bca9c78966cb106b53b50ee9551f2bef88e775f0b97d80248a6f1cd11a5f96819c836a36078d107d57683dd37a63b2e0ad49e5d52af77 SHA512 ff08fc987e9320b6c33d57da92ec8f5dcede2fbbafb0cb6a03eb0537da7312d8b7a4aabd30c7ae1cc7e6c9554b7d08654444b1141ee1df944e6d6de957e3d6c0
diff --git a/dev-python/pyBigWig/pyBigWig-0.3.17.ebuild b/dev-python/pyBigWig/pyBigWig-0.3.17.ebuild
deleted file mode 100644
index acaca23068a..00000000000
--- a/dev-python/pyBigWig/pyBigWig-0.3.17.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..11} )
-DISTUTILS_USE_PEP517=setuptools
-inherit distutils-r1
-
-DESCRIPTION="quick access to and creation of bigWig files"
-HOMEPAGE="https://github.com/dpryan79/pyBigWig"
-
-if [[ ${PV} == 9999 ]] ; then
-	inherit git-r3
-	EGIT_REPO_URI="https://github.com/dpryan79/pyBigWig"
-else
-	SRC_URI="https://github.com/dpryan79/pyBigWig/archive/${PV}.tar.gz -> ${P}.tar.gz"
-	KEYWORDS="~amd64 ~x86"
-fi
-
-LICENSE="MIT"
-SLOT="0"
-
-DEPEND="sci-biology/libBigWig"
-RDEPEND="${DEPEND}"
diff --git a/dev-python/pyBigWig/pyBigWig-0.3.18.ebuild b/dev-python/pyBigWig/pyBigWig-0.3.18.ebuild
deleted file mode 100644
index acaca23068a..00000000000
--- a/dev-python/pyBigWig/pyBigWig-0.3.18.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..11} )
-DISTUTILS_USE_PEP517=setuptools
-inherit distutils-r1
-
-DESCRIPTION="quick access to and creation of bigWig files"
-HOMEPAGE="https://github.com/dpryan79/pyBigWig"
-
-if [[ ${PV} == 9999 ]] ; then
-	inherit git-r3
-	EGIT_REPO_URI="https://github.com/dpryan79/pyBigWig"
-else
-	SRC_URI="https://github.com/dpryan79/pyBigWig/archive/${PV}.tar.gz -> ${P}.tar.gz"
-	KEYWORDS="~amd64 ~x86"
-fi
-
-LICENSE="MIT"
-SLOT="0"
-
-DEPEND="sci-biology/libBigWig"
-RDEPEND="${DEPEND}"
diff --git a/dev-python/pyBigWig/pyBigWig-0.3.24.ebuild b/dev-python/pyBigWig/pyBigWig-0.3.24.ebuild
new file mode 100644
index 00000000000..5b3a7cd0073
--- /dev/null
+++ b/dev-python/pyBigWig/pyBigWig-0.3.24.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2025 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..12} )
+DISTUTILS_USE_PEP517=setuptools
+export SETUPTOOLS_SCM_PRETEND_VERSION=${PV}
+inherit distutils-r1
+
+DESCRIPTION="quick access to and creation of bigWig files"
+HOMEPAGE="https://github.com/deeptools/pyBigWig"
+SRC_URI="https://github.com/deeptools/pyBigWig/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+REPEND="
+	sys-libs/zlib:0=
+	sci-biology/libBigWig
+"
+DEPEND="${RDEPEND}"
+
+distutils_enable_tests pytest
+
+python_test() {
+	local pysite="${BUILD_DIR}"/install/${EPREFIX}/usr/lib/${EPYTHON}/site-packages
+	ln -s "${S}"/pyBigWigTest/test.bigBed "${pysite}"/pyBigWigTest || die
+	ln -s "${S}"/pyBigWigTest/test.bw "${pysite}"/pyBigWigTest || die
+	epytest pyBigWigTest/test.py
+}
diff --git a/dev-python/pyBigWig/pyBigWig-9999.ebuild b/dev-python/pyBigWig/pyBigWig-9999.ebuild
deleted file mode 100644
index acaca23068a..00000000000
--- a/dev-python/pyBigWig/pyBigWig-9999.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..11} )
-DISTUTILS_USE_PEP517=setuptools
-inherit distutils-r1
-
-DESCRIPTION="quick access to and creation of bigWig files"
-HOMEPAGE="https://github.com/dpryan79/pyBigWig"
-
-if [[ ${PV} == 9999 ]] ; then
-	inherit git-r3
-	EGIT_REPO_URI="https://github.com/dpryan79/pyBigWig"
-else
-	SRC_URI="https://github.com/dpryan79/pyBigWig/archive/${PV}.tar.gz -> ${P}.tar.gz"
-	KEYWORDS="~amd64 ~x86"
-fi
-
-LICENSE="MIT"
-SLOT="0"
-
-DEPEND="sci-biology/libBigWig"
-RDEPEND="${DEPEND}"