.gitignore

# Stuff I don't want to see
*.cnn.1
build/
compare/*.alt.pdf
compare/*.diffs.dat
compare/acgh/*.cnr
compare/acgh/*.cns
compare/cnvkit-flat/*.cnr
compare/cnvkit-flat/*.cns
compare/cnvkit-pair/*.cnr
compare/cnvkit-pair/*.cns
compare/cnvkit-pair/reference-*.cnn
compare/contra-pair/*.cnr
compare/contra-pair/*.cns
compare/contra-pool/*.cnr
compare/contra-pool/*.cns
compare/copywriter/*.cns
compare/copywriter/*.seg

# Compiled python files
*.pyc
*.pyo

# Jython class files
*.class

# Backup files from some Unix editors
*~
*.swp
*.bak

# Patches and any original files created by patch command
*.diff
*.patch
*.orig
*.rej

# Mac OS X hidden files
.DS_Store

# Dolphin window manager hidden files
.directory

# MANIFEST file created automatically from MANIFEST.in (pip packaging)
MANIFEST

# Java TreeView backup/cache/index/whatever generated file
*.jtv

# R session files
.RData
.Rhistory