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<p><section class="page-header"></p>
<p></section></p>
<p><section class="main-content"></p>
<h1 id="erfan-sayyari">Erfan Sayyari</h1>
<p>I am a Ph.D candidate at University of California San Diego, and is advised by <a href="http://eceweb.ucsd.edu/~smirarab/">Prof. Siavash Mirarab</a>. My research includes developing methods on large-scale data with applications in computational biology. More specifically, my research focuses on developing new and fast methods of estimating species trees from gene trees, and assessing quality of phylogenies. Here are my <strong><a href="documents/erfan.pdf">CV</a></strong>, <strong><a href="https://scholar.google.com/citations?user=5kylyPEAAAAJ&hl=en&oi=ao">google scholar</a></strong>, and <strong><a href="https://github.com/esayyari">GitHub</a></strong> repository.</p>
<h2 id="publications">Publications</h2>
<ul>
<li><strong>Sayyari, E.</strong>, James Whitfield, and Siavash Mirarab. Fragmentary gene sequences negatively impact gene tree and species tree reconstruction. Molecular Biology and Evolution (in press) (2017).</li>
<li>Zhang, C., <strong>Sayyari, E.</strong> and Mirarab, S., 2017, October. ASTRAL-III: Increased Scalability and Impacts of Contracting Low Support Branches. In RECOMB International Workshop on Comparative Genomics (pp. 53-75). Springer, Cham.</li>
<li>Mai, U., <strong>Sayyari, E.</strong> and Mirarab, S., 2017. Minimum variance rooting of phylogenetic trees and implications for species tree reconstruction. PloS one, 12(8), p.e0182238. (Best paper award at GLBIO 2017)</li>
<li><strong>Sayyari, E.</strong> and Mirarab, S., 2016.Fast coalescent-based computation of local branch support from quartet frequencie. Molecular biology and evolution, 33(7), pp.1654-1668.</li>
<li><strong>Sayyari, E.</strong> and Mirarab, S., 2016. Anchoring quartet-based phylogenetic distances and appli- cations to species tree reconstruction. BMC genomics, 17(10), p.783.</li>
<li>Weibel, N., Hwang, S.O., Rick, S., <strong>Sayyari, E.</strong>, Lenzen, D. and Hollan, J., 2016, January. Hands that Speak: An Integrated Approach to Studying Complex Human Communicative Body Movements. In System Sciences (HICSS), 2016 49th Hawaii International Conference on (pp. 610-619). IEEE</li>
<li><strong>Sayyari, E.</strong>, Farzi, M., Estakhrooeieh, R.R., Samiee, F. and Shamsollahi, M.B., 2012, July. Migraine analysis through EEG signals with classification approach. In Information Science, Signal Processing and their Applications (ISSPA), 2012 11th International Conference on (pp. 859-863). IEEE.</li>
</ul>
<h2 id="teaching">Teaching</h2>
<p>I have TA'ed several courses during my graduate studies at University of California, San Diego. My duties included holding weekly discussion sections and office hours, and grading projects, assignments, midterms and final exams.</p>
<ul>
<li><strong>Undergraduate courses:</strong> Engineering Probability and Stats, Circuits and Systems, Probability and Random Processes</li>
<li><strong>Graduate courses:</strong> Algorithms for biological data analysis, and Random Processes</li>
</ul>
<h3 id="toc_11">Contact Information</h3>
<p>Email <a href="[email protected]">Erfan Sayyari</a></p>
<p>Department of Electrical and Computer Engineering<br>
UC San Diego<br>
9500 Gilman Drive<br>
EBU 1, Room 6510<br>
La Jolla, CA 92093</p>