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clade-defs.txt
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Clade Name Clade Definition Section Letter Components Show Comments
Base "Entransia_fimbriata+""Klebsormidium_subtile""+""Chlorokybus_atmophyticus""+""Spirotaenia_minuta""+""Mesostigma_viride""+""Pyramimonas_parkeae""+""Monomastix_opisthostigma""+""Nephroselmis_pyriformis""+""Uronema_sp""" None 0
Zygnematophyceae "Penium_margaritaceum+""Cosmarium_ochthodes""+""Roya_obtusa""+""Netrium_digitus""+""Spirogyra_sp""+""Cylindrocystis_cushleckae""+""Mougeotia_sp""+""Cylindrocystis_brebissonii""+""Mesotaenium_endlicherianum""" None 1
Coleochaetales "Coleochaete_irregularis+""Coleochaete_scutata""+""Chaetosphaeridium_globosum""" None 1
Chara Chara_vulgaris None 0
Nuphar """Nuphar_advena""" None 0
Amborela """Amborella_trichopoda""" None 0
Chloranthales """Sarcandra_glabra""" None 0
Ginkgo """Ginkgo_biloba""" None 0
Cycads "Cycas_micholitzii+""Cycas_rumphii""+""Zamia_vazquezii""" None 0
Gnetales "Welwitschia_mirabilis+""Ephedra_sinica""+""Gnetum_montanum""" None 1
Anthocerophyta "Nothoceros_vincentianus+""Nothoceros_aenigmaticus""" None 0
Marchantiophyta "Marchantia_emarginata+""Marchantia_polymorpha""+""Ricciocarpos_natans""+""Sphaerocarpos_texanus""+""Metzgeria_crassipilis""+""Bazzania_trilobata""" None 0
Pinaceae "Cedrus_libani+""Pinus_taeda""" None 0
Eudicots "Catharanthus_roseus+""Allamanda_cathartica""+""Ipomoea_purpurea""+""Rosmarinus_officinalis""+""Tanacetum_parthenium""+""Inula_helenium""+""Diospyros_malabarica""+""Kochia_scoparia""+""Carica_papaya""+""Arabidopsis_thaliana""+""Hibiscus_cannabinus""+""Populus_trichocarpa""+""Boehmeria_nivea""+""Medicago_truncatula""+""Larrea_tridentata""+""Vitis_vinifera""+""Podophyllum_peltatum""+""Aquilegia_formosa""+""Eschscholzia_californica""" None 0
Monocots "Sabal_bermudana+""Yucca_filamentosa""+""Smilax_bona_nox""+""Colchicum_autumnale""+""Dioscorea_villosa""+""Acorus_americanus""+""Zea_mays""+""Sorghum_bicolor""+""Brachypodium_distachyon""+""Oryza_sativa""" None 0
Magnoliids "Liriodendron_tulipifera+""Persea_americana""+""Houttuynia_cordata""+""Saruma_henryi""" None 0
Coniferales minus Pinaceae """Cunninghamia_lanceolata""+""Juniperus_scopulorum""+""Taxus_baccata""+""Sciadopitys_verticillata""+""Prumnopitys_andina""" None 0
Bryophyta "Leucodon_brachypus+""Anomodon_attenuatus""+""Thuidium_delicatulum""+""Rhynchostegium_serrulatum""+""Bryum_argenteum""+""Rosulabryum_cf_capillare""+""Hedwigia_ciliata""+""Ceratodon_purpureus""+""Physcomitrella_patens""+""Polytrichum_commune""+""Sphagnum_lescurii""" None 1
Kadsura """Kadsura_heteroclita""" None 0
All "Catharanthus_roseus+""Allamanda_cathartica""+""Ipomoea_purpurea""+""Rosmarinus_officinalis""+""Tanacetum_parthenium""+""Inula_helenium""+""Diospyros_malabarica""+""Kochia_scoparia""+""Carica_papaya""+""Arabidopsis_thaliana""+""Hibiscus_cannabinus""+""Populus_trichocarpa""+""Boehmeria_nivea""+""Medicago_truncatula""+""Larrea_tridentata""+""Vitis_vinifera""+""Podophyllum_peltatum""+""Aquilegia_formosa""+""Eschscholzia_californica""+""Sarcandra_glabra""+""Liriodendron_tulipifera""+""Persea_americana""+""Houttuynia_cordata""+""Saruma_henryi""+""Sabal_bermudana""+""Yucca_filamentosa""+""Smilax_bona_nox""+""Colchicum_autumnale""+""Dioscorea_villosa""+""Acorus_americanus""+""Zea_mays""+""Sorghum_bicolor""+""Brachypodium_distachyon""+""Oryza_sativa""+""Kadsura_heteroclita""+""Nuphar_advena""+""Amborella_trichopoda""+""Cunninghamia_lanceolata""+""Juniperus_scopulorum""+""Taxus_baccata""+""Sciadopitys_verticillata""+""Prumnopitys_andina""+""Gnetum_montanum""+""Welwitschia_mirabilis""+""Ephedra_sinica""+""Cedrus_libani""+""Pinus_taeda""+""Cycas_rumphii""+""Cycas_micholitzii""+""Zamia_vazquezii""+""Ginkgo_biloba""+""Psilotum_nudum""+""Ophioglossum_petiolatum""+""Angiopteris_evecta""+""Pteridium_aquilinum""+""Alsophila_spinulosa""+""Equisetum_diffusum""+""Dendrolycopodium_obscurum""+""Pseudolycopodiella_caroliniana""+""Huperzia_squarrosa""+""Selaginella_moellendorffii_1kp""+""Selaginella_moellendorffii_genome""+""Leucodon_brachypus""+""Anomodon_attenuatus""+""Thuidium_delicatulum""+""Rhynchostegium_serrulatum""+""Bryum_argenteum""+""Rosulabryum_cf_capillare""+""Hedwigia_ciliata""+""Ceratodon_purpureus""+""Physcomitrella_patens""+""Polytrichum_commune""+""Sphagnum_lescurii""+""Marchantia_polymorpha""+""Marchantia_emarginata""+""Ricciocarpos_natans""+""Sphaerocarpos_texanus""+""Bazzania_trilobata""+""Metzgeria_crassipilis""+""Nothoceros_aenigmaticus""+""Nothoceros_vincentianus""+""Penium_margaritaceum""+""Cosmarium_ochthodes""+""Roya_obtusa""+""Netrium_digitus""+""Spirogyra_sp""+""Cylindrocystis_cushleckae""+""Mougeotia_sp""+""Cylindrocystis_brebissonii""+""Mesotaenium_endlicherianum""+""Coleochaete_irregularis""+""Coleochaete_scutata""+""Chaetosphaeridium_globosum""+""Chara_vulgaris""+""Entransia_fimbriata""+""Klebsormidium_subtile""+""Spirotaenia_minuta""+""Chlorokybus_atmophyticus""+""Mesostigma_viride""+""Uronema_sp""+""Monomastix_opisthostigma""+""Pyramimonas_parkeae""+""Nephroselmis_pyriformis""" None 0
LandPlants All-Base-Chara-Coleochaetales-Zygnematophyceae None 0
Zygnematophyceae/Coleochaetales Zygnematophyceae+Coleochaetales None Zygnematophyceae+Coleochaetales 0
Zygnematophyceae/LandPlants Zygnematophyceae+LandPlants None Zygnematophyceae+LandPlants 1
Chara/LandPlants LandPlants+Chara None LandPlants+Chara 1
Coleochaetales/Zygnematophyceae/LandPlants Coleochaetales+Zygnematophyceae+LandPlants None Coleochaetales+Zygnematophyceae+LandPlants 0
Coleochaetales/LandPlants Coleochaetales+LandPlants None Coleochaetales+LandPlants 1
Coleochaetales/Chara/LandPlants Coleochaetales+Chara/LandPlants None Coleochaetales+Chara+LandPlants 1
Chara/Coleochaetales Chara+Coleochaetales None Coleochaetales+Chara 1
Tracheophytes LandPlants-Bryophyta-Marchantiophyta-Anthocerophyta None 1
Bryophyta/Marchantiophyta Bryophyta+Marchantiophyta None Bryophyta+Marchantiophyta 1
Bryophyta/Marchantiophyta/Anthocerophyta Bryophyta+Marchantiophyta+Anthocerophyta None Bryophyta+Marchantiophyta+Anthocerophyta 1
Anthocerophyta/Tracheophytes Anthocerophyta+Tracheophytes None Anthocerophyta+Tracheophytes 1
Bryophyta/Tracheophytes Bryophyta+Tracheophytes None Bryophyta+Tracheophytes 1
Bryophyta/Tracheophytes/Anthocerophyta Bryophyta+Tracheophytes+Anthocerophyta None Bryophyta+Tracheophytes+Anthocerophyta 1
Bryophyta/Marchantiophyta/Tracheophytes Tracheophytes+Bryophyta+Marchantiophyta None Tracheophytes+Bryophyta+Marchantiophyta 1
Gnetales/Pinaceae Gnetales+Pinaceae None Gnetales+Pinaceae 1
Coniferales Pinaceae+Coniferales minus Pinaceae None 1
Coniferales/Gnetales Gnetales+Coniferales None Gnetales+Coniferales 1
Ginkgo/Cycads Cycads+Ginkgo None Cycads+Ginkgo 0
Ginkgo/Cycads/Coniferales Ginkgo+Cycads+Coniferales None Cycads+Coniferales 0
Ginkgo/Cycads/Coniferales/Gnetales Ginkgo+Cycads+Coniferales+Gnetales None Cycads+Coniferales+Gnetales 0
Eudicots/Magnoliids Eudicots+Magnoliids None Eudicots+Magnoliids 1
Eudicots/Magnoliids/Chloranthales Eudicots+Magnoliids+Chloranthales None Eudicots+Magnoliids+Chloranthales 1
Magnoliids/Chloranthales Chloranthales+Magnoliids None Chloranthales+Magnoliids 1
Magnoliids/Chloranthales/Monocots Magnoliids+Chloranthales+Monocots None Magnoliids+Chloranthales+Monocots 1
Monocots/Eudicots Eudicots+Monocots None Eudicots+Monocots 1
Monocots/Magnoliids Magnoliids+Monocots None Magnoliids+Monocots 1
Amborela/Nuphar Amborela+Nuphar None Amborela+Nuphar 1
AngioSperms Monocots+Amborela/Nuphar+Eudicots+Magnoliids+Chloranthales+Kadsura None 1
AngioSperms minus Amborela AngioSperms-Amborela None 1
AngioSperms minus Amborela and Nuphar AngioSperms-Amborela/Nuphar None 1