diff --git a/docs/pages/doctrees/Mask.doctree b/docs/pages/doctrees/Mask.doctree index 32cd83d..01180db 100644 Binary files a/docs/pages/doctrees/Mask.doctree and b/docs/pages/doctrees/Mask.doctree differ diff --git a/docs/pages/doctrees/Plots.doctree b/docs/pages/doctrees/Plots.doctree index 9a07063..0d8621c 100644 Binary files a/docs/pages/doctrees/Plots.doctree and b/docs/pages/doctrees/Plots.doctree differ diff --git a/docs/pages/doctrees/Pre-processing.doctree b/docs/pages/doctrees/Pre-processing.doctree index 2e7f804..5e41ff2 100644 Binary files a/docs/pages/doctrees/Pre-processing.doctree and b/docs/pages/doctrees/Pre-processing.doctree differ diff --git a/docs/pages/doctrees/Topology.doctree b/docs/pages/doctrees/Topology.doctree index 9aaf2a0..b615153 100644 Binary files a/docs/pages/doctrees/Topology.doctree and b/docs/pages/doctrees/Topology.doctree differ diff --git a/docs/pages/doctrees/Use-cases.doctree b/docs/pages/doctrees/Use-cases.doctree index 837cd7b..03691ef 100644 Binary files a/docs/pages/doctrees/Use-cases.doctree and b/docs/pages/doctrees/Use-cases.doctree differ diff --git a/docs/pages/doctrees/environment.pickle b/docs/pages/doctrees/environment.pickle index ca623ab..2a25e1d 100644 Binary files a/docs/pages/doctrees/environment.pickle and b/docs/pages/doctrees/environment.pickle differ diff --git a/docs/pages/html/Mask.html b/docs/pages/html/Mask.html index 42d44b5..91b64d6 100644 --- a/docs/pages/html/Mask.html +++ b/docs/pages/html/Mask.html @@ -182,7 +182,7 @@

Two-dimensional dataXdetect and Xranked has the same shape as the input data. The elements with value > 0 depict a region of interest.

Plot the image with the detected peaks:

# Import library
-fp.plot()
+fp.plot(figure_order='horizontal')
diff --git a/docs/pages/html/Plots.html b/docs/pages/html/Plots.html index a0ecf34..a27199e 100644 --- a/docs/pages/html/Plots.html +++ b/docs/pages/html/Plots.html @@ -212,7 +212,7 @@

Pre-processing plot
# Import library
 from findpeaks import findpeaks
 # Initialize
-fp = findpeaks(method='topology', scale=True, denoise='fastnl', window=3, togray=True, imsize=(50,150))
+fp = findpeaks(method='topology', whitelist=['peak'])
 # Import example
 X = fp.import_example("2dpeaks")
 # Detect peaks
@@ -240,7 +240,7 @@ 
Plot<
 
 
 
# Plot
-fp.plot()
+fp.plot(figure_order='horizontal')
 

 

 
diff --git a/docs/pages/html/Pre-processing.html b/docs/pages/html/Pre-processing.html
index deb2f64..7905a2b 100644
--- a/docs/pages/html/Pre-processing.html
+++ b/docs/pages/html/Pre-processing.html
@@ -278,13 +278,13 @@ 
Preprocessing
# Import library
 from findpeaks import findpeaks
 # Init
-fp = findpeaks(method="topology", imsize=(50,100), scale=True, togray=True, denoise=None)
+fp = findpeaks(method="topology", whitelist=['peak'], imsize=(50,100), scale=True, togray=True, denoise=None)
 # Small dataset
 X = fp.import_example("2dpeaks")
 
 # Interpolate the data using linear by factor 10
 results = fp.fit(X)
-fp.plot()
+fp.plot(figure_order='horizontal')
 # fp.plot_persistence()
 

 
diff --git a/docs/pages/html/Topology.html b/docs/pages/html/Topology.html
index 0ec460d..b482962 100644
--- a/docs/pages/html/Topology.html
+++ b/docs/pages/html/Topology.html
@@ -380,7 +380,7 @@ 
Two-dimensional
# Import library
 from findpeaks import findpeaks
 # Initialize
-fp = findpeaks(method='topology')
+fp = findpeaks(method='topology', whitelist=['peak'])
 # Example 2d image
 X = fp.import_example('2dpeaks')
 # Fit topology method on the 1d-vector
@@ -394,7 +394,7 @@ 
Two-dimensional
# Import library
-fp.plot()
+fp.plot(figure_order='horizontal')
 

 

 

diff --git a/docs/pages/html/Use-cases.html b/docs/pages/html/Use-cases.html
index fb034e5..e3624f3 100644
--- a/docs/pages/html/Use-cases.html
+++ b/docs/pages/html/Use-cases.html
@@ -247,7 +247,7 @@ 
SAR# Fit
 fp.fit(img)
 # Thousands of peaks are detected at this point.
-fp.plot()
+fp.plot(figure_order='horizontal')
 fp.plot_mesh()
 
 
@@ -266,7 +266,7 @@ 
SAR# Import image example
 img = fp.import_example('2dpeaks_image')
 # Initializatie
-fp = findpeaks(scale=True, denoise='fastnl', params={'window': 31}, togray=True, imsize=(300,300))
+fp = findpeaks(method='topology', limit=160, scale=True, togray=True, imsize=(150, 150), denoise='lee_sigma', params={'window': 17})
 # Fit
 fp.fit(img)
 
@@ -287,7 +287,7 @@ 
SAR
 
In the next step, we can examine the detected peaks (see below). But these peaks are barely visible on the plot. Nevertheless, we seem to removed many peaks compared to the not-preprocessed image.

 
# Plot
-fp.plot()
+fp.plot(figure_order='horizontal')
 

 

 

@@ -372,7 +372,7 @@ 
SAR
 
Denoising
from findpeaks import findpeaks
-fp = findpeaks()
+fp = findpeaks(limit=160)
 img = fp.import_example('2dpeaks_image')
 import findpeaks
 
diff --git a/docs/pages/html/_sources/Mask.rst.txt b/docs/pages/html/_sources/Mask.rst.txt
index 9d51bd1..e9ef7f1 100644
--- a/docs/pages/html/_sources/Mask.rst.txt
+++ b/docs/pages/html/_sources/Mask.rst.txt
@@ -42,7 +42,7 @@ Plot the image with the detected peaks:
 .. code:: python
 
     # Import library
-    fp.plot()
+    fp.plot(figure_order='horizontal')
 
 .. _Figure_6:
 
diff --git a/docs/pages/html/_sources/Plots.rst.txt b/docs/pages/html/_sources/Plots.rst.txt
index 1f9cde8..ed2e7bd 100644
--- a/docs/pages/html/_sources/Plots.rst.txt
+++ b/docs/pages/html/_sources/Plots.rst.txt
@@ -65,7 +65,7 @@ Depending on the number of user defined pre-processing steps, the plot will add
     # Import library
     from findpeaks import findpeaks
     # Initialize
-    fp = findpeaks(method='topology', scale=True, denoise='fastnl', window=3, togray=True, imsize=(50,150))
+    fp = findpeaks(method='topology', whitelist=['peak'])
     # Import example
     X = fp.import_example("2dpeaks")
     # Detect peaks
@@ -95,7 +95,7 @@ The **plot** function :func:`findpeaks.findpeaks.findpeaks.plot` plots the 3 maj
 .. code:: python
 
     # Plot
-    fp.plot()
+    fp.plot(figure_order='horizontal')
 
 
 .. |figP1| image:: ../figs/plot_example1.png
diff --git a/docs/pages/html/_sources/Pre-processing.rst.txt b/docs/pages/html/_sources/Pre-processing.rst.txt
index 6084ff4..24b7520 100644
--- a/docs/pages/html/_sources/Pre-processing.rst.txt
+++ b/docs/pages/html/_sources/Pre-processing.rst.txt
@@ -134,13 +134,13 @@ Each of these steps can be controlled by setting the input parameters.
     # Import library
     from findpeaks import findpeaks
     # Init
-    fp = findpeaks(method="topology", imsize=(50,100), scale=True, togray=True, denoise=None)
+    fp = findpeaks(method="topology", whitelist=['peak'], imsize=(50,100), scale=True, togray=True, denoise=None)
     # Small dataset
     X = fp.import_example("2dpeaks")
 
     # Interpolate the data using linear by factor 10
     results = fp.fit(X)
-    fp.plot()
+    fp.plot(figure_order='horizontal')
     # fp.plot_persistence()
 
 
diff --git a/docs/pages/html/_sources/Topology.rst.txt b/docs/pages/html/_sources/Topology.rst.txt
index a88ac4f..173055b 100644
--- a/docs/pages/html/_sources/Topology.rst.txt
+++ b/docs/pages/html/_sources/Topology.rst.txt
@@ -259,7 +259,7 @@ The docstring provide the information regarding the input/output parameters: :fu
     # Import library
     from findpeaks import findpeaks
     # Initialize
-    fp = findpeaks(method='topology')
+    fp = findpeaks(method='topology', whitelist=['peak'])
     # Example 2d image
     X = fp.import_example('2dpeaks')
     # Fit topology method on the 1d-vector
@@ -276,7 +276,7 @@ Plot the image with the detected peaks:
 .. code:: python
 
     # Import library
-    fp.plot()
+    fp.plot(figure_order='horizontal')
 
 .. _Figure_5:
 
diff --git a/docs/pages/html/_sources/Use-cases.rst.txt b/docs/pages/html/_sources/Use-cases.rst.txt
index 2496694..247fa2e 100644
--- a/docs/pages/html/_sources/Use-cases.rst.txt
+++ b/docs/pages/html/_sources/Use-cases.rst.txt
@@ -108,7 +108,7 @@ Let's load a SAR image, apply denoising techniques and then detect peaks.
     # Fit
     fp.fit(img)
     # Thousands of peaks are detected at this point.
-    fp.plot()
+    fp.plot(figure_order='horizontal')
     fp.plot_mesh()
 
 
@@ -134,7 +134,7 @@ From this point on, we will *pre-process* the image and apply the *topology* met
     # Import image example
     img = fp.import_example('2dpeaks_image')
     # Initializatie
-    fp = findpeaks(scale=True, denoise='fastnl', params={'window': 31}, togray=True, imsize=(300,300))
+    fp = findpeaks(method='topology', limit=160, scale=True, togray=True, imsize=(150, 150), denoise='lee_sigma', params={'window': 17})
     # Fit
     fp.fit(img)
     
@@ -163,7 +163,7 @@ In the next step, we can examine the detected peaks (see below). But these peaks
 .. code:: python
 
     # Plot
-    fp.plot()
+    fp.plot(figure_order='horizontal')
 
 
 .. |figU1| image:: ../figs/sonar_plot.png
@@ -267,7 +267,7 @@ Denoising
 .. code:: python
 
 	from findpeaks import findpeaks
-	fp = findpeaks()
+	fp = findpeaks(limit=160)
 	img = fp.import_example('2dpeaks_image')
 	import findpeaks
 
diff --git a/docs/pages/html/searchindex.js b/docs/pages/html/searchindex.js
index affde75..909200b 100644
--- a/docs/pages/html/searchindex.js
+++ b/docs/pages/html/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"docnames": ["Abstract", "Caerus", "Coding quality", "Denoise", "Documentation", "Examples", "Installation", "Mask", "Peakdetect", "Performance", "Plots", "Pre-processing", "Topology", "Use-cases", "findpeaks.findpeaks", "index", "sponsor"], "filenames": ["Abstract.rst", "Caerus.rst", "Coding quality.rst", "Denoise.rst", "Documentation.rst", "Examples.rst", "Installation.rst", "Mask.rst", "Peakdetect.rst", "Performance.rst", "Plots.rst", "Pre-processing.rst", "Topology.rst", "Use-cases.rst", "findpeaks.findpeaks.rst", "index.rst", "sponsor.rst"], "titles": ["Abstract", "Caerus", "Coding quality", "Denoise", "Sponsor", "Quick Examples", "Quickstart", "Mask", "Peakdetect", "Performance", "One-dimensional plots", "Interpolate/impute", "Topology", "Stock Markets", "Description", "findpeaks\u2019s documentation!", "<no title>"], "terms": {"background": [0, 7], "The": [0, 1, 2, 3, 5, 7, 8, 9, 10, 11, 12, 13, 14], "detect": [0, 3, 4, 6, 7, 10, 11, 12, 14, 15], "peak": [0, 3, 4, 6, 7, 8, 10, 11, 12, 14, 15], "i": [0, 1, 2, 3, 4, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16], "well": [0, 3, 5, 14], "known": [0, 3], "challang": [0, 1, 13, 14], "across": 0, "variou": [0, 3, 4, 9, 11, 12, 14, 15, 16], "domain": [0, 3, 14], "indic": 0, "signific": [0, 12, 14], "event": 0, "sudden": 0, "increas": [0, 1, 3, 13, 14], "price": 0, "volum": 0, "sharp": [0, 14], "rise": 0, "demand": 0, "burst": 0, "data": [0, 3, 5, 6, 10, 11, 13, 14, 15], "traffic": 0, "most": [0, 12], "routin": 0, "us": [0, 1, 2, 3, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15], "method": [0, 1, 2, 3, 6, 7, 8, 9, 10, 11, 13, 14], "do": [0, 13, 14], "emploi": 0, "ani": [0, 3, 11, 12, 14], "assumpt": 0, "shape": [0, 7, 12, 14], "baselin": [0, 2], "nois": [0, 11, 12, 13, 14], "all": [0, 3, 5, 6, 11, 12, 13, 14], "inform": [0, 12, 13, 14], "signal": [0, 8, 11, 12], "goe": 0, "up": [0, 1, 7, 8, 12, 14], "come": [0, 8], "down": 0, "A": [0, 3, 4, 6, 9, 11, 12, 13, 14, 15], "when": [0, 3, 8, 12, 13, 14], "threshold": [0, 1, 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"topologi": [0, 5, 6, 7, 8, 10, 11, 13, 14, 15], "mask": [0, 5, 14, 15], "peakdetect": [0, 1, 5, 11, 14, 15], "rank": [0, 10, 12, 14], "among": 0, "other": [0, 3, 4, 14, 16], "persist": [0, 5, 9, 14, 15], "score": [0, 1, 2, 9, 12, 13, 14], "approach": [0, 3, 5, 7, 8, 9, 13, 15], "interpol": [0, 8, 10, 14, 15], "smooth": [0, 3, 5, 8, 11, 12, 14], "resiz": [0, 3, 13, 14, 15], "normal": [0, 14, 15], "In": [0, 3, 7, 12, 13, 14, 15], "addit": [0, 3, 12, 14, 15], "we": [0, 1, 3, 7, 8, 9, 12, 13, 14], "plot": [0, 1, 3, 5, 6, 7, 8, 9, 11, 12, 14], "easili": [0, 10, 12], "intepret": 0, "convers": [0, 5, 11, 14], "2d": [0, 7, 10, 12, 14, 15], "3d": [0, 5, 14, 15], "mesh": [0, 5, 14, 15], "analysi": [0, 1, 3, 7, 8, 9, 12, 14], "chromatographi": 0, "http": [0, 1, 3, 6, 8, 12, 13, 14], "doi": [0, 3], "org": [0, 12, 14], "10": [0, 2, 3, 5, 8, 9, 10, 11, 12, 13, 14], "1016": 0, "s0922": 0, "3487": 0, "98": 0, "80027": 0, "0": [0, 1, 2, 3, 5, 7, 8, 9, 10, 11, 12, 13, 14], "21": [0, 5, 11, 13], "1998": 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"find-peaks-with-pre-processing"]], "Quickstart": [[6, "quickstart"]], "Installation": [[6, "installation"], [15, null]], "Create environment": [[6, "create-environment"]], "Uninstalling": [[6, "uninstalling"]], "Mask": [[7, "mask"]], "Two-dimensional data": [[7, "two-dimensional-data"]], "Peakdetect": [[8, "peakdetect"]], "One-dimensional data": [[8, "one-dimensional-data"]], "References peakdetect": [[8, "references-peakdetect"]], "Performance": [[9, "performance"]], "Comparison peak detection in one-dimensional data": [[9, "comparison-peak-detection-in-one-dimensional-data"]], "Small dataset": [[9, "small-dataset"]], "Peakdetect results without interpolation (left) and with (right)": [[9, "id1"]], "Topology results without interpolation (left) and with (right)": [[9, "id2"]], "Large dataset": [[9, "large-dataset"]], "Peakdetect on a large noisy dataset": [[9, "id3"]], "Topology on a large noisy dataset": [[9, "id4"]], "Topology with limit parameter set to 1": [[9, "id5"]], "One-dimensional plots": [[10, "one-dimensional-plots"]], "Pre-processing": [[10, "pre-processing"], [15, null]], "Inerpolation": [[10, "id1"]], "Persistence": [[10, "persistence"]], "Persistence Plot": [[10, "id2"], [10, "id5"]], "Two-dimensional plots": [[10, "two-dimensional-plots"]], "Pre-processing plot": [[10, "pre-processing-plot"]], "Preprocessing plot": [[10, "id3"]], "Plot": [[10, "plot"]], "Final results": [[10, "id4"]], "Persistence plot": [[10, "persistence-plot"]], "3D-mesh": [[10, "d-mesh"]], "Mesh plot. Top: 3D mesh. Bottom: top view.": [[10, "id6"], [13, "id5"]], "Interpolate/impute": [[11, "interpolate-impute"]], "Interpolation example": [[11, "id1"]], "Results without interpolation (left) and with (right)": [[11, "id2"]], "Resize": [[11, "resize"]], "Scale": [[11, "scale"]], "Gray": [[11, "gray"]], "Preprocessing": [[11, "preprocessing"]], "Interpolation example 2d-array (image)": [[11, "id3"]], "Topology": [[12, "topology"]], "persistent homology": [[12, "persistent-homology"]], "Efficiency": [[12, "efficiency"]], "One-dimensional": [[12, "one-dimensional"]], "Interpolated data with topology method. Results are mapped to the original input data.": [[12, "id1"]], "Two-dimensional": [[12, "two-dimensional"]], "References": [[12, "references"]], "Stock Markets": [[13, "stock-markets"]], "Bitcoin": [[13, "bitcoin"]], "Facebook stocks": [[13, "facebook-stocks"]], "SAR": [[13, "sar"]], "Results without pre-processing": [[13, "id2"]], "Pre-processing SAR image": [[13, "id3"]], "Detected peaks": [[13, "id4"]], "persistence-homology. Top: no limit. Bottom: with limit": [[13, "id6"]], "Denoising": [[13, "denoising"]], "Plots": [[13, "plots"], [15, null]], "Find peaks on the denoised image": [[13, "find-peaks-on-the-denoised-image"]], "Description": [[14, "description"], [14, "id1"], [14, "id2"], [14, "id3"], [14, "id4"], [14, "id5"], [14, "id6"], [14, "id7"], [14, "id8"], [14, "id9"], [14, "id10"], [14, "id11"], [14, "id12"], [14, "id13"], [14, "id14"], [14, "id15"], [14, "id16"], [14, "id17"]], "findpeaks\u2019s documentation!": [[15, "findpeaks-s-documentation"]], "Content": [[15, "content"]], "Background": [[15, null]], "Algorithms": [[15, null]], "Examples": [[15, null]], "Documentation": [[15, null]], "Indices and tables": [[15, "indices-and-tables"]]}, "indexentries": {"assert_indices_in_range() (in module findpeaks.filters.mean)": [[14, "findpeaks.filters.mean.assert_indices_in_range"]], "assert_parameters() (in module findpeaks.filters.lee_enhanced)": [[14, "findpeaks.filters.lee_enhanced.assert_parameters"]], "calculate_all_mi() (in module findpeaks.filters.frost)": [[14, "findpeaks.filters.frost.calculate_all_Mi"]], "calculate_local_weight_matrix() (in module findpeaks.filters.frost)": [[14, "findpeaks.filters.frost.calculate_local_weight_matrix"]], "compute_coef_var() (in module findpeaks.filters.frost)": [[14, "findpeaks.filters.frost.compute_coef_var"]], "denoise() (in module findpeaks.stats)": [[14, "findpeaks.stats.denoise"]], "disable_tqdm() (in module findpeaks.stats)": [[14, "findpeaks.stats.disable_tqdm"]], "findpeaks (class in findpeaks.findpeaks)": [[14, "findpeaks.findpeaks.findpeaks"]], "findpeaks.filters.frost": [[14, "module-findpeaks.filters.frost"]], "findpeaks.filters.kuan": [[14, "module-findpeaks.filters.kuan"]], "findpeaks.filters.lee": [[14, "module-findpeaks.filters.lee"]], "findpeaks.filters.lee_enhanced": [[14, "module-findpeaks.filters.lee_enhanced"]], "findpeaks.filters.mean": [[14, "module-findpeaks.filters.mean"]], "findpeaks.filters.median": [[14, "module-findpeaks.filters.median"]], "findpeaks.findpeaks": [[14, "module-findpeaks.findpeaks"]], "findpeaks.interpolate": [[14, "module-findpeaks.interpolate"]], "findpeaks.stats": [[14, "module-findpeaks.stats"]], "fit() (findpeaks.findpeaks.findpeaks method)": [[14, "findpeaks.findpeaks.findpeaks.fit"]], "frost_filter() (in module findpeaks.filters.frost)": [[14, "findpeaks.filters.frost.frost_filter"]], "import_example() (findpeaks.findpeaks.findpeaks method)": [[14, "findpeaks.findpeaks.findpeaks.import_example"]], "import_example() (in module findpeaks.findpeaks)": [[14, "findpeaks.findpeaks.import_example"]], "imread() (findpeaks.findpeaks.findpeaks method)": [[14, "findpeaks.findpeaks.findpeaks.imread"]], "interpolate_line1d() (in module findpeaks.interpolate)": [[14, "findpeaks.interpolate.interpolate_line1d"]], "interpolate_line2d() (in module findpeaks.interpolate)": [[14, "findpeaks.interpolate.interpolate_line2d"]], "interpolate_nans() (in module findpeaks.interpolate)": [[14, "findpeaks.interpolate.interpolate_nans"]], "is_url() (in module findpeaks.findpeaks)": [[14, "findpeaks.findpeaks.is_url"]], "kuan_filter() (in module findpeaks.filters.kuan)": [[14, "findpeaks.filters.kuan.kuan_filter"]], "lee_enhanced_filter() (in module findpeaks.filters.lee_enhanced)": [[14, "findpeaks.filters.lee_enhanced.lee_enhanced_filter"]], "lee_filter() (in module findpeaks.filters.lee)": [[14, "findpeaks.filters.lee.lee_filter"]], "mask() (in module findpeaks.stats)": [[14, "findpeaks.stats.mask"]], "mean_filter() (in module findpeaks.filters.mean)": [[14, "findpeaks.filters.mean.mean_filter"]], "median_filter() (in module findpeaks.filters.median)": [[14, "findpeaks.filters.median.median_filter"]], "module": [[14, "module-findpeaks.filters.frost"], [14, "module-findpeaks.filters.kuan"], [14, "module-findpeaks.filters.lee"], [14, "module-findpeaks.filters.lee_enhanced"], [14, "module-findpeaks.filters.mean"], [14, "module-findpeaks.filters.median"], [14, "module-findpeaks.findpeaks"], [14, "module-findpeaks.interpolate"], [14, "module-findpeaks.stats"]], "normalize() (in module findpeaks.stats)": [[14, "findpeaks.stats.normalize"]], "peaks1d() (findpeaks.findpeaks.findpeaks method)": [[14, "findpeaks.findpeaks.findpeaks.peaks1d"]], "peaks2d() (findpeaks.findpeaks.findpeaks method)": [[14, "findpeaks.findpeaks.findpeaks.peaks2d"]], "plot() (findpeaks.findpeaks.findpeaks method)": [[14, "findpeaks.findpeaks.findpeaks.plot"]], "plot() (in module findpeaks.interpolate)": [[14, "findpeaks.interpolate.plot"]], "plot1d() (findpeaks.findpeaks.findpeaks method)": [[14, "findpeaks.findpeaks.findpeaks.plot1d"]], "plot2d() (findpeaks.findpeaks.findpeaks method)": [[14, "findpeaks.findpeaks.findpeaks.plot2d"]], "plot_mask() (findpeaks.findpeaks.findpeaks method)": [[14, "findpeaks.findpeaks.findpeaks.plot_mask"]], "plot_mesh() (findpeaks.findpeaks.findpeaks method)": [[14, "findpeaks.findpeaks.findpeaks.plot_mesh"]], "plot_persistence() (findpeaks.findpeaks.findpeaks method)": [[14, "findpeaks.findpeaks.findpeaks.plot_persistence"]], "plot_preprocessing() (findpeaks.findpeaks.findpeaks method)": [[14, "findpeaks.findpeaks.findpeaks.plot_preprocessing"]], "preprocessing() (findpeaks.findpeaks.findpeaks method)": [[14, "findpeaks.findpeaks.findpeaks.preprocessing"]], "resize() (in module findpeaks.stats)": [[14, "findpeaks.stats.resize"]], "reverse_values() (in module findpeaks.stats)": [[14, "findpeaks.stats.reverse_values"]], "scale() (in module findpeaks.stats)": [[14, "findpeaks.stats.scale"]], "togray() (in module findpeaks.stats)": [[14, "findpeaks.stats.togray"]], "topology() (in module findpeaks.stats)": [[14, "findpeaks.stats.topology"]], "topology2d() (in module findpeaks.stats)": [[14, "findpeaks.stats.topology2d"]], "weighting() (in module findpeaks.filters.kuan)": [[14, "findpeaks.filters.kuan.weighting"]], "weighting() (in module findpeaks.filters.lee_enhanced)": [[14, "findpeaks.filters.lee_enhanced.weighting"]]}})
\ No newline at end of file
diff --git a/findpeaks/__init__.py b/findpeaks/__init__.py
index cc6dca9..3e1265a 100644
--- a/findpeaks/__init__.py
+++ b/findpeaks/__init__.py
@@ -23,7 +23,7 @@
 
 __author__ = 'Erdogan Tasksen'
 __email__ = 'erdogant@gmail.com'
-__version__ = '2.6.0'
+__version__ = '2.6.1'
 
 # module level doc-string
 __doc__ = """
diff --git a/findpeaks/examples.py b/findpeaks/examples.py
index b8c7946..94a4b3e 100644
--- a/findpeaks/examples.py
+++ b/findpeaks/examples.py
@@ -92,6 +92,7 @@
                imsize=(150, 150),
                denoise='lee_sigma',
                params={'window': 17},
+               limit=160,
                )
 
 # Import example image
@@ -102,7 +103,7 @@
 # Create mesh plot
 fp.plot_mesh()
 # Create denoised plot
-fp.plot(limit=160, figure_order='horizontal')
+fp.plot(figure_order='horizontal')
 fp.plot_persistence()
 
 # %% Issue