From fc33e82da64a8d4fe1205c812844ebad50ec84df Mon Sep 17 00:00:00 2001 From: larsevj Date: Mon, 16 Dec 2024 13:42:23 +0100 Subject: [PATCH] Test out uv lockfile --- .github/workflows/build_and_test.yml | 9 +- .github/workflows/codspeed.yml | 9 +- .../workflows/run_ert_test_data_setups.yml | 13 +- .github/workflows/style.yml | 9 +- .github/workflows/test_ert.yml | 20 +- .github/workflows/test_ert_with_flow.yml | 15 +- .github/workflows/test_ert_with_slurm.yml | 13 +- .github/workflows/test_everest.yml | 19 +- .github/workflows/test_semeio.yml | 11 +- .github/workflows/typing.yml | 11 +- pyproject.toml | 33 +- uv.lock | 4303 +++++++++++++++++ 12 files changed, 4405 insertions(+), 60 deletions(-) create mode 100644 uv.lock diff --git a/.github/workflows/build_and_test.yml b/.github/workflows/build_and_test.yml index ac71c88e012..7dd30305d8a 100644 --- a/.github/workflows/build_and_test.yml +++ b/.github/workflows/build_and_test.yml @@ -11,7 +11,7 @@ on: env: ERT_SHOW_BACKTRACE: 1 ECL_SKIP_SIGNAL: 1 - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true concurrency: group: ${{ github.workflow }}-${{ github.ref }} @@ -139,10 +139,13 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@v5 + with: + enable-cache: true + python-version: ${{ matrix.python-version }} - name: Install ert run: | - uv pip install ".[dev, everest]" + uv sync --extra everest --group dev - name: Make test directory run: | @@ -153,7 +156,7 @@ jobs: - name: Test docs run: | - sphinx-build -n -v -E -W ./docs/ert ./tmp/ert_docs + uv run sphinx-build -n -v -E -W ./docs/ert ./tmp/ert_docs publish: name: Publish to PyPI diff --git a/.github/workflows/codspeed.yml b/.github/workflows/codspeed.yml index ad51eff182a..55c10dfff53 100644 --- a/.github/workflows/codspeed.yml +++ b/.github/workflows/codspeed.yml @@ -8,7 +8,7 @@ on: workflow_dispatch: env: - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true concurrency: group: ${{ github.workflow }}-${{ github.ref }} @@ -25,12 +25,15 @@ jobs: python-version: '3.12' - name: Install uv uses: astral-sh/setup-uv@v5 + with: + enable-cache: true + python-version: '3.12' - run: | - uv pip install ".[dev, everest]" + uv sync --extra everest --group dev uv pip uninstall pytest-benchmark uv pip install pytest-codspeed - uses: CodSpeedHQ/action@v3 with: token: ${{ secrets.CODSPEED_TOKEN }} run: | - pytest tests/ert/performance_tests --codspeed --timeout=1200 + uv run pytest tests/ert/performance_tests --codspeed --timeout=1200 diff --git a/.github/workflows/run_ert_test_data_setups.yml b/.github/workflows/run_ert_test_data_setups.yml index 6f2f2a0b0d0..e758368241f 100644 --- a/.github/workflows/run_ert_test_data_setups.yml +++ b/.github/workflows/run_ert_test_data_setups.yml @@ -13,7 +13,7 @@ concurrency: env: ERT_SHOW_BACKTRACE: 1 - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true jobs: run-ert-test-data: @@ -45,26 +45,29 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@v5 + with: + enable-cache: true + python-version: ${{ matrix.python-version }} - name: Install ERT and dependencies run: | - uv pip install . + uv sync - name: Test poly example run: | pushd test-data/ert/poly_example - ert test_run poly.ert + uv run ert test_run poly.ert popd - name: Test snake_oil run: | pushd test-data/ert/snake_oil uv pip install oil_reservoir_synthesizer resdata - ert test_run snake_oil.ert + uv run ert test_run snake_oil.ert popd - name: Test snake_oil_field run: | pushd test-data/ert/snake_oil_field - ert test_run snake_oil.ert + uv run ert test_run snake_oil.ert popd diff --git a/.github/workflows/style.yml b/.github/workflows/style.yml index e070f363049..b78b60cd121 100644 --- a/.github/workflows/style.yml +++ b/.github/workflows/style.yml @@ -8,7 +8,7 @@ on: pull_request: env: - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true concurrency: group: ${{ github.workflow }}-${{ github.ref }} @@ -35,12 +35,15 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@v5 + with: + enable-cache: true + python-version: ${{ matrix.python-version }} - name: Install ERT with style dependencies run: | - uv pip install ".[style]" + uv sync --group style - name: Run style check if: ${{ always() }} run: | - SKIP=no-commit-to-branch pre-commit run --all-files --show-diff-on-failure + SKIP=no-commit-to-branch uv run pre-commit run --all-files --show-diff-on-failure diff --git a/.github/workflows/test_ert.yml b/.github/workflows/test_ert.yml index 9e0da2f02d7..c74b96929a0 100644 --- a/.github/workflows/test_ert.yml +++ b/.github/workflows/test_ert.yml @@ -11,7 +11,7 @@ on: env: ERT_SHOW_BACKTRACE: 1 ECL_SKIP_SIGNAL: 1 - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true jobs: tests-ert: @@ -32,15 +32,18 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@v5 + with: + enable-cache: true + python-version: ${{ inputs.python-version }} - name: Install ert run: | - uv pip install ".[dev, everest]" + uv sync --extra everest --group dev - name: GUI Test if: inputs.test-type == 'gui-tests' run: | - pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -v --mpl --benchmark-disable tests/ert/ui_tests/gui --durations=25 + uv run pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -v --mpl --benchmark-disable tests/ert/ui_tests/gui --durations=25 - name: Upload artifact images uses: actions/upload-artifact@v4 @@ -53,18 +56,18 @@ jobs: - name: CLI Test if: inputs.test-type == 'cli-tests' run: | - pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -v --benchmark-disable --dist loadgroup tests/ert/ui_tests/cli --durations=25 + uv run pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -v --benchmark-disable --dist loadgroup tests/ert/ui_tests/cli --durations=25 - name: Unit Test if: inputs.test-type == 'unit-tests' run: | - pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -n logical --show-capture=stderr -v --benchmark-disable --mpl --dist loadgroup tests/ert/unit_tests --durations=25 - pytest --doctest-modules --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov2.xml src/ --ignore src/ert/dark_storage + uv run pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -n logical --show-capture=stderr -v --benchmark-disable --mpl --dist loadgroup tests/ert/unit_tests --durations=25 + uv run pytest --doctest-modules --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov2.xml src/ --ignore src/ert/dark_storage - name: Performance Test if: inputs.test-type == 'performance-tests' run: | - pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -n logical --show-capture=stderr -v --benchmark-disable --dist loadgroup tests/ert/performance_tests --durations=25 + uv run pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -n logical --show-capture=stderr -v --benchmark-disable --dist loadgroup tests/ert/performance_tests --durations=25 - name: Upload coverage to Codecov id: codecov1 @@ -102,11 +105,12 @@ jobs: - name: Test CLI run: | - ert --help + uv run ert --help - name: Test for a clean repository run: | # Remove things we have generated on purpose: + ls -la rm -rf .coverage rm -f coverage.xml cov1.xml cov2.xml junit.xml rm -f ert.*.whl diff --git a/.github/workflows/test_ert_with_flow.yml b/.github/workflows/test_ert_with_flow.yml index 47097eb46b3..3c42aabaa72 100644 --- a/.github/workflows/test_ert_with_flow.yml +++ b/.github/workflows/test_ert_with_flow.yml @@ -7,7 +7,7 @@ on: type: string env: - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true jobs: test-ert-with-flow: @@ -25,10 +25,13 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@v5 + with: + enable-cache: true + python-version: ${{ inputs.python-version }} - name: Install ert and everest run: | - uv pip install ".[everest,dev]" + uv sync --extra everest --group dev uv pip install git+https://github.com/equinor/everest-models - name: Install flow @@ -46,18 +49,18 @@ jobs: - name: Run integration tests towards OPM flow without flowrun run: | set -e - pytest tests/ert/unit_tests/resources/test_run_flow_simulator.py + uv run pytest tests/ert/unit_tests/resources/test_run_flow_simulator.py - name: Run Ert on an example configuration with flow run: | pushd test-data/ert/flow_example perl -p -i -e 's/NUM_REALIZATIONS\s*12/NUM_REALIZATIONS 2/g' flow.ert - ert ensemble_experiment flow.ert + uv run ert ensemble_experiment flow.ert popd - name: Run Everest on an example configuration with flow run: | pushd test-data/everest/egg/everest/model - everest lint config_flow.yml - everest run config_flow.yml + uv run everest lint config_flow.yml + uv run everest run config_flow.yml popd diff --git a/.github/workflows/test_ert_with_slurm.yml b/.github/workflows/test_ert_with_slurm.yml index 2acc76cb723..165e63f1c47 100644 --- a/.github/workflows/test_ert_with_slurm.yml +++ b/.github/workflows/test_ert_with_slurm.yml @@ -7,7 +7,7 @@ on: type: string env: - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true jobs: test-ert-on-slurm: @@ -25,10 +25,13 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@v5 + with: + enable-cache: true + python-version: ${{ inputs.python-version }} - name: Install ert run: | - uv pip install ".[dev]" + uv sync --group dev - name: Install and setup slurm run: | @@ -69,8 +72,8 @@ jobs: run: | set -e export _ERT_TESTS_ALTERNATIVE_QUEUE=AlternativeQ - pytest tests/ert/unit_tests/scheduler --slurm - pytest tests/ert/ui_tests/cli/test_missing_runpath.py --slurm + uv run pytest tests/ert/unit_tests/scheduler --slurm + uv run pytest tests/ert/ui_tests/cli/test_missing_runpath.py --slurm - name: Test poly-example on slurm run: | @@ -84,4 +87,4 @@ jobs: QUEUE_SYSTEM SLURM EOF - time ert ensemble_experiment poly.ert + time uv run ert ensemble_experiment poly.ert diff --git a/.github/workflows/test_everest.yml b/.github/workflows/test_everest.yml index f3dfb60f845..2cfb90e08bd 100644 --- a/.github/workflows/test_everest.yml +++ b/.github/workflows/test_everest.yml @@ -12,7 +12,7 @@ on: env: NO_PROJECT_RES: 1 - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true jobs: tests-everest: @@ -33,43 +33,46 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@v5 + with: + enable-cache: true + python-version: ${{ inputs.python-version }} - name: Install Everest and dependencies run: | - uv pip install ".[dev,everest]" + uv sync --extra everest --group dev - name: Run Tests Linux if: ${{ inputs.test-type == 'test' && runner.os != 'macOS'}} run: | - pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "not integration_test" --dist loadgroup -sv + uv run pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "not integration_test" --dist loadgroup -sv - name: Run Tests macOS if: ${{ inputs.test-type == 'test' && runner.os == 'macOS'}} run: | - python -m pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "not integration_test and not fails_on_macos_github_workflow" --dist loadgroup -sv + uv run python -m pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "not integration_test and not fails_on_macos_github_workflow" --dist loadgroup -sv - name: Run Integration Tests Linux if: ${{inputs.test-type == 'integration-test' && runner.os != 'macOS'}} run: | - pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "integration_test" --dist loadgroup -sv + uv run pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "integration_test" --dist loadgroup -sv - name: Run Integration Tests macOS if: ${{inputs.test-type == 'integration-test' && runner.os == 'macOS'}} run: | - python -m pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "integration_test and not fails_on_macos_github_workflow" --dist loadgroup + uv run python -m pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "integration_test and not fails_on_macos_github_workflow" --dist loadgroup - name: Build Documentation if: inputs.test-type == 'doc' run: | uv pip install git+https://github.com/equinor/everest-models.git mkdir tmp - sphinx-build -n -v -E -W ./docs/everest ./tmp/everest_docs + uv run sphinx-build -n -v -E -W ./docs/everest ./tmp/everest_docs - name: Run tests requiring everest-models if: inputs.test-type == 'everest-models-test' run: | uv pip install git+https://github.com/equinor/everest-models.git - python -m pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m everest_models_test --dist loadgroup + uv run python -m pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m everest_models_test --dist loadgroup - name: Upload coverage to Codecov if: inputs.test-type != 'everest-docs-entry-test' && inputs.test-type != 'doc' diff --git a/.github/workflows/test_semeio.yml b/.github/workflows/test_semeio.yml index de0fa6469b0..d2cf95c8111 100644 --- a/.github/workflows/test_semeio.yml +++ b/.github/workflows/test_semeio.yml @@ -8,7 +8,7 @@ name: Test Semeio on: [pull_request] env: - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true concurrency: group: ${{ github.workflow }}-${{ github.ref }} @@ -36,10 +36,13 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@v5 + with: + enable-cache: true + python-version: ${{ matrix.python-version }} - name: Install ert run: | - uv pip install . + uv sync - name: Get semeio run: | @@ -48,5 +51,5 @@ jobs: - name: Test semeio run: | pushd semeio - uv pip install ".[test]" - pytest + VIRTUAL_ENV=../.venv uv pip install ".[test]" + UV_PROJECT_ENVIRONMENT=../.venv uv run --no-sync pytest diff --git a/.github/workflows/typing.yml b/.github/workflows/typing.yml index 5a6b9c4b278..ddf1797c2b8 100644 --- a/.github/workflows/typing.yml +++ b/.github/workflows/typing.yml @@ -8,7 +8,7 @@ on: pull_request: env: - UV_SYSTEM_PYTHON: 1 + UV_FROZEN: true concurrency: group: ${{ github.workflow }}-${{ github.ref }} @@ -35,16 +35,19 @@ jobs: - name: Install uv uses: astral-sh/setup-uv@v5 + with: + enable-cache: true + python-version: ${{ matrix.python-version }} - name: Install ERT and dependencies run: | - uv pip install ".[dev, types, everest]" + uv sync --extra everest --group dev --group types - run: echo ::add-matcher::.github/mypy-matcher.json - name: Run mypy ert run: | - mypy src/ert + uv run mypy src/ert - name: Run mypy everest run: | - mypy src/everest + uv run mypy src/everest diff --git a/pyproject.toml b/pyproject.toml index 010607a8298..f25ec2f8031 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -11,7 +11,7 @@ authors = [ { name = "Equinor ASA", email = "fg_sib-scout@equinor.com" }, ] description = "Ensemble based Reservoir Tool (ERT)" -requires-python = ">=3.11" +requires-python = ">=3.11, <3.13" readme = "README.md" license = { text = "GPL-3.0" } classifiers = [ @@ -93,6 +93,19 @@ wdupdate = "everest.jobs.scripts.wdupdate:main" Repository = "https://github.com/equinor/ert" [project.optional-dependencies] +everest = [ + "progressbar2", + "ruamel.yaml", + "fastapi", + "decorator", + "resdata", + "colorama", + "ropt[pandas]>=0.1,<0.11", + "ropt-dakota>=0.1,<0.11", + "seba-sqlite", +] + +[dependency-groups] dev = [ "furo", "hypothesis!=6.102.0,!=6.112.3,>=6.85", @@ 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