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Library ambiguius RNA bases loaded from HELM as bases with % label #6149

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AlexeyGirin opened this issue Dec 11, 2024 · 0 comments · May be fixed by #6407
Open

Library ambiguius RNA bases loaded from HELM as bases with % label #6149

AlexeyGirin opened this issue Dec 11, 2024 · 0 comments · May be fixed by #6407
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@KristinaKasyanovskaya
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HELM Bucket: Bugs related to Export to HELM format Priority: Medium Severity: Medium Medium level visibility to the user Test Automation affected That issue affect on existed auto test, please update screenshots after fix
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Refined Backlog

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@AlexeyGirin
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AlexeyGirin commented Dec 11, 2024 •
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Steps to Reproduce

  1. Toggle to Macro - Flex
  2. Load using paste from clipboard way following HELM: RNA1{R(A,C,G,U)P.R(C,G,U)P.R(A,G,U)P.R(A,C,U)P.R(G,U)P.R(A,U)P.R(C,U)P}$$$$V2.0

Actual behavior
Library ambiguius RNA bases loaded from HELM as bases with % label
image

Expected behavior
Library ambiguius RNA bases loaded from HELM as bases with labels from the Library
image

As per requirements:

Symbol Monomers that make up the ambiguous DNA/RNA/Both
Y C (cytosine), U (uracil) RNA
W A (adenine), U (uracil) RNA
K G (guanine), U (uracil) RNA
B C (cytosine), G (guanine), U (uracil) RNA
D A (adenine), G (guanine), U (uracil) RNA
H A (adenine), C (cytosine), U (uracil) RNA
N Any base, A (adenine), C (cytosine), G (guanine), U (uracil) RNA

Versions

  • Ketcher Version 2.28.0-rc.1 Build at 2024-12-03; 17:04:52
  • Indigo Version 1.27.0-rc.1.0-g8d656a341-wasm32-wasm-clang-19.0.0
  • Chrome Version 131.0.6778.109 (Official Build) (64-bit)
  • Win10

Reference issues: epam/Indigo#2188, #4554
@AlexeyGirin AlexeyGirin added bug Priority: Medium HELM Bucket: Bugs related to Export to HELM format Severity: Medium Medium level visibility to the user labels Dec 11, 2024
@AliaksandrDziarkach AliaksandrDziarkach transferred this issue from epam/Indigo Dec 12, 2024
@AlexeyGirin AlexeyGirin added the Test Automation affected That issue affect on existed auto test, please update screenshots after fix label Dec 17, 2024
@AlexeyGirin AlexeyGirin removed the bug label Jan 16, 2025
@KristinaKasyanovskaya KristinaKasyanovskaya self-assigned this Feb 3, 2025
@KristinaKasyanovskaya KristinaKasyanovskaya linked a pull request Feb 3, 2025 that will close this issue
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@KristinaKasyanovskaya KristinaKasyanovskaya linked a pull request Feb 3, 2025 that will close this issue
#6149-Library ambiguius RNA bases loaded from HELM as bases with % label #6407
Open
9 tasks
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@KristinaKasyanovskaya KristinaKasyanovskaya

Labels
HELM Bucket: Bugs related to Export to HELM format Priority: Medium Severity: Medium Medium level visibility to the user Test Automation affected That issue affect on existed auto test, please update screenshots after fix
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#6149-Library ambiguius RNA bases loaded from HELM as bases with % label epam/ketcher
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@rrodionov91 @AliaksandrDziarkach @AlexeyGirin @KristinaKasyanovskaya