Fiji-2.9.0-Java-8.eb

easyblock = 'PackedBinary'

name = 'Fiji'
version = '2.9.0'
versionsuffix = '-Java-%(javaver)s'

homepage = 'https://fiji.sc'
description = """Fiji is an image processing package—a 'batteries-included' distribution of
 ImageJ, bundling a lot of plugins which facilitate scientific image analysis.
This release is based on ImageJ-2.1.0 and Fiji-2.1.1"""

toolchain = SYSTEM

source_urls = ['https://downloads.imagej.net/fiji/releases/%(version)s/']
sources = ['fiji-%(version)s-nojre.zip']
checksums = ['970fb80cf2a4fe8bfcecc2cc9a8617b9ab28f19fbe229ea6ae2f7f42674c8a42']

dependencies = [('Java', '8', '', SYSTEM)]

postinstallcmds = [
    # Remove binaries for other platforms
    'rm %(installdir)s/{ImageJ-win32.exe,ImageJ-win64.exe}',
    # Enable any update site (edit existing site with same parameters to enable it)
    # Full list at https://imagej.github.io/list-of-update-sites/
    '%(installdir)s/ImageJ-linux64 --headless --update edit-update-site "ImageScience"'
    ' https://sites.imagej.net/ImageScience/',
    '%(installdir)s/ImageJ-linux64 --headless --update edit-update-site "3D ImageJ Suite"'
    ' https://sites.imagej.net/Tboudier/',
    '%(installdir)s/ImageJ-linux64 --headless --update edit-update-site "ilastik"'
    ' https://sites.imagej.net/Ilastik/',
    # Add a new update site
    # '%(installdir)s/ImageJ-linux64 --headless --update add-update-site "New Name"'
    # ' https://site.url/NewName/',
    # Update the installation
    '%(installdir)s/ImageJ-linux64 --headless --update update',
]

sanity_check_paths = {
    'files': ['ImageJ-linux64'],
    'dirs': [],
}

modloadmsg = """
Additional plugins can be installed in your $HOME/.plugins folder or requested to user support
Use ImageJ/Fiji in headless mode in your scripts with the command `ImageJ-linux64 --headless`
More information at https://imagej.net/Headless
"""

moduleclass = 'vis'