From 7746ab77b6eae3d7acc96116bafd7289c31539ba Mon Sep 17 00:00:00 2001 From: fidelram Date: Tue, 27 Mar 2018 11:49:02 +0200 Subject: [PATCH] updated version number --- docs/content/News.rst | 32 ++++++++++++++++++++++++++++++++ hicexplorer/_version.py | 2 +- 2 files changed, 33 insertions(+), 1 deletion(-) diff --git a/docs/content/News.rst b/docs/content/News.rst index 70b388d4..a4f8ea3b 100644 --- a/docs/content/News.rst +++ b/docs/content/News.rst @@ -1,6 +1,38 @@ News and Developments ===================== +Release 2.1.1 +------------ +**27 March 2018** + +This release fixes a problem related to python3 in which chromosome names were of bytes type + +Release 2.1 +----------- +**5 March 2018** + +The 2.1 version of HiCExplorer comes with new features and bugfixes. + +- Adding the new feature `hicAggregateContacts`: A tool that allows plotting of aggregated Hi-C sub-matrices of a specified list of positions. +- Many improvements to the documentation and the help text. Thanks to @GinaRe and @gtrichard. +- hicPlotMatrix: + - supports only bigwig files for an additional data track. + - the argument `--pca` was renamed to `--bigwig` + - Smoothing the bigwig values to neighboring bins if no data is present there + - Fixes to a bug concerning a crash of `tight_layout` + - Adding the possibility to flip the sign of the values of the bigwig track + - Adding the possibility to scale the values of the bigwig track +- hicPlotViewpoint: Adds a feature to plot multiple matrices in one image +- cooler file format: + - supports mcool files + - applies correction factors if present + - optionally reads `bin['weight']` +- fixes: + - a crash in hicPlotTads if `horizontal lines` were used + - checks if all characters of a title are ASCII. If not they are converted to the closest looking one. +- Updated and fixate version number of the dependencies + + Release 2.0 ----------- diff --git a/hicexplorer/_version.py b/hicexplorer/_version.py index 50dc907a..d436839f 100644 --- a/hicexplorer/_version.py +++ b/hicexplorer/_version.py @@ -2,4 +2,4 @@ # This file is originally generated from Git information by running 'setup.py # version'. Distribution tarballs contain a pre-generated copy of this file. -__version__ = '2.0' +__version__ = '2.1.1'