DESCRIPTION

Package: dropClust
Type: Package
Title: Single Cell Transcriptome Analysis
Version: 2.1.0
Author: Debajyoti Sinha, Pradyumn Sinha, Ritwik Saha, Sanghamitra Bandyopadhyay, Debarka Sengupta
Maintainer: Debajyoti Sinha <deb.sinha@hotmail.com>
Description: A toolkit for resource efficient analysis of large scale single cell RNA-Seq data. See Sinha D, Sinha P, Saha R, Bandyopadhyay S and Sengupta D (2019) <doi:10.1101/596924> and Sinha D, et al (2018) <doi:10.1093/nar/gky007> for more details.
Depends: R (>= 3.6),
         ggplot2
Imports: batchelor,
         dynamicTreeCut,
         flexclust,
         GenSA,
         graphics,
         grDevices,
         gridExtra,
         igraph,
         irlba,
         magrittr,
         methods,
         Matrix,
         pheatmap,
         plyr,
         RColorBrewer,
         Rcpp (>= 0.11.3),
         RcppAnnoy,
         rdist,
         Rdpack,
         reshape2,
         Rtsne,
         S4Vectors,
         SingleCellExperiment,
         stats,
         SummarizedExperiment,
         tibble,
         utils,
         uwot
Suggests: knitr, rmarkdown
LinkingTo: Rcpp, RcppEigen
biocViews:
RdMacros: Rdpack
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
VignetteBuilder: knitr