From 981256282bafbc7c8f48cf94fe087745e1135cf5 Mon Sep 17 00:00:00 2001 From: David Lougheed Date: Tue, 11 Jun 2024 13:49:39 -0400 Subject: [PATCH] chore(call): increase queue size stuck limit --- strkit/call/call_sample.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/strkit/call/call_sample.py b/strkit/call/call_sample.py index d885cf0..0fdeb72 100644 --- a/strkit/call/call_sample.py +++ b/strkit/call/call_sample.py @@ -32,7 +32,7 @@ # TODO: Parameterize -LOG_PROGRESS_INTERVAL: int = 120 # seconds +LOG_PROGRESS_INTERVAL: int = 10 # seconds PROFILE_LOCUS_CALLS: bool = False NUMERAL_CONTIG_PATTERN = re.compile(r"^(\d{1,2}|X|Y)$") @@ -233,7 +233,7 @@ def _log(): else: last_qsize_n_stuck = 0 - if last_qsize_n_stuck >= 20: + if last_qsize_n_stuck >= 30: # zombie worker or stuck, exit lg.error(f"Terminating progress worker; seems to be stuck with {qsize=}") return