From 745ea7d403f9be0f11af4eebb5274d276b9600e1 Mon Sep 17 00:00:00 2001 From: David Lougheed Date: Tue, 11 Jun 2024 11:13:49 -0400 Subject: [PATCH] fix(call): snv print debugging --- strkit/call/call_locus.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/strkit/call/call_locus.py b/strkit/call/call_locus.py index bb1f62e..3625713 100644 --- a/strkit/call/call_locus.py +++ b/strkit/call/call_locus.py @@ -518,7 +518,7 @@ def call_alleles_with_incorporated_snvs( if print_snvs: print( - rn, f"\t{read['cn']:.0f}", "\t", cat_strs(read_useful_snv_bases), n_non_blank_hq_read_useful_snv_bases) + rn, f"\t{read['cn']:.0f}", "\t", read_useful_snv_bases, n_non_blank_hq_read_useful_snv_bases) n_reads_with_many_snvs: int = len(read_dict_items_with_many_snvs) n_reads_with_at_least_one_snv: int = len(read_dict_items_with_at_least_one_snv)