From 60c49c6b955f59d47147af970456a16ac08a36ee Mon Sep 17 00:00:00 2001
From: dariober <dario.beraldi@gmail.com>
Date: Wed, 31 Jul 2024 18:18:44 +0100
Subject: [PATCH] Fix paths

---
 src/test/java/samTextViewer/InteractiveInputTest.java | 1 +
 test_data/session.yaml                                | 8 +++++---
 2 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/src/test/java/samTextViewer/InteractiveInputTest.java b/src/test/java/samTextViewer/InteractiveInputTest.java
index 6588c6e..1426af4 100644
--- a/src/test/java/samTextViewer/InteractiveInputTest.java
+++ b/src/test/java/samTextViewer/InteractiveInputTest.java
@@ -320,6 +320,7 @@ public void canSaveSession()
     InteractiveInput ip = new InteractiveInput(new ConsoleReader(), 1);
     ip.processInput("session save -f tmp.yml tr1", proc);
     SessionHandler sh = new SessionHandler(new File("tmp.yml"));
+    Files.deleteIfExists(new File("tmp.yml").toPath());
   }
 
   @Test
diff --git a/test_data/session.yaml b/test_data/session.yaml
index 589b12b..ea3fbb5 100644
--- a/test_data/session.yaml
+++ b/test_data/session.yaml
@@ -1,19 +1,21 @@
+## MEMO: For testing use relative paths so they work locally and on github
+
 - sessionName: "no-fastafile"
   lastRead: "2024-07-27T12:17:21.176154"
   genome:
-    samSeqDictSource: "/home/dario/git_repos/ASCIIGenome/test_data/ds051.actb.bam"
+    samSeqDictSource: "test_data/ds051.actb.bam"
     chrom: "chr7"
     from: 80
     to: 1001
     fastaFile: null
   tracks:
     ds#1:
-      filename: "/home/dario/git_repos/ASCIIGenome/test_data/ds051.actb.bam"
+      filename: "test_data/ds051.actb.bam"
       type: "tracks.TrackPileup"
       colour: "blue"
       awk: ""
     ds#2:
-      filename: "/home/dario/git_repos/ASCIIGenome/test_data/ds051.actb.bam"
+      filename: "test_data/ds051.actb.bam"
       type: "tracks.TrackReads"
       colour: "0"
       awk: ""