Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Package version conflict on linux64 #35

Closed
1 task done
johnwason opened this issue Mar 12, 2022 · 3 comments
Closed
1 task done

Package version conflict on linux64 #35

johnwason opened this issue Mar 12, 2022 · 3 comments
Labels
bug

Comments

@johnwason
Copy link
Contributor

Solution to issue cannot be found in the documentation.

  • I checked the documentation.

Issue

I am seeing a version conflict when trying to use jsoncpp on linux-64 (Ubuntu Focal host):

Package libstdcxx-ng conflicts for:
tesseract-robotics-visualization -> boost-cpp[version='>=1.74.0,<1.74.1.0a0'] -> libstdcxx-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=9.4.0|>=7.2.0']
libstdcxx-ng[version='>=10.3.0']
tesseract-robotics-environment -> boost-cpp[version='>=1.74.0,<1.74.1.0a0'] -> libstdcxx-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=9.4.0|>=7.2.0']
console_bridge -> libstdcxx-ng[version='>=10.3.0|>=9.3.0|>=7.5.0|>=7.3.0']
tesseract-robotics-environment -> libstdcxx-ng[version='>=10.3.0']
eigen -> libstdcxx-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=9.4.0|>=7.2.0']
tesseract-robotics-visualization -> libstdcxx-ng[version='>=10.3.0']
jsoncpp=1.9.5 -> libstdcxx-ng[version='>=9.4.0']

Package libgcc-ng conflicts for:
libgcc-ng[version='>=10.3.0']
tesseract-robotics-visualization -> boost-cpp[version='>=1.74.0,<1.74.1.0a0'] -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=9.4.0|>=7.2.0']
tesseract-robotics-environment -> boost-cpp[version='>=1.74.0,<1.74.1.0a0'] -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=9.4.0|>=7.2.0']
console_bridge -> libgcc-ng[version='>=10.3.0|>=9.3.0|>=7.5.0|>=7.3.0']
tesseract-robotics-environment -> libgcc-ng[version='>=10.3.0']
eigen -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=9.4.0|>=7.2.0']
tesseract-robotics-visualization -> libgcc-ng[version='>=10.3.0']
jsoncpp=1.9.5 -> libgcc-ng[version='>=9.4.0']

Package eigen conflicts for:
tesseract-robotics-environment -> eigen
tesseract-robotics-visualization -> eigen
eigen

Package tesseract-robotics-environment conflicts for:
tesseract-robotics-environment
tesseract-robotics-visualization -> tesseract-robotics-environment

Package boost-cpp conflicts for:
tesseract-robotics-environment -> boost-cpp[version='>=1.74.0,<1.74.1.0a0']
boost-cpp=1.74.0
tesseract-robotics-visualization -> boost-cpp[version='>=1.74.0,<1.74.1.0a0']

Package console_bridge conflicts for:
tesseract-robotics-environment -> console_bridge[version='>=1.0.2,<1.1.0a0']
tesseract-robotics-visualization -> console_bridge[version='>=1.0.2,<1.1.0a0']
console_bridgeThe following specifications were found to be incompatible with your system:

  - feature:/linux-64::__glibc==2.31=0
  - feature:|@/linux-64::__glibc==2.31=0
  - console_bridge -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
  - eigen -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']

Your installed version is: 2.31

This error does not occur if I don't include jsoncpp as a requirement. I also do not see this error on Windows.

This is the tesseract-robotics feedstock: https://github.com/johnwason/tesseract-robotics-feedstock

Installed packages

_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       1_gnu    conda-forge
beautifulsoup4            4.10.0             pyha770c72_0    conda-forge
brotlipy                  0.7.0           py310h6acc77f_1003    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.18.1               h7f98852_0    conda-forge
ca-certificates           2021.10.8            ha878542_0    conda-forge
certifi                   2021.10.8       py310hff52083_1    conda-forge
cffi                      1.15.0          py310h0fdd8cc_0    conda-forge
chardet                   4.0.0           py310hff52083_2    conda-forge
charset-normalizer        2.0.12             pyhd8ed1ab_0    conda-forge
colorama                  0.4.4              pyh9f0ad1d_0    conda-forge
conda                     4.11.0          py310hff52083_2    conda-forge
conda-build               3.21.8          py310hff52083_0    conda-forge
conda-package-handling    1.7.3           py310h6acc77f_1    conda-forge
cryptography              36.0.1          py310h685ca39_0    conda-forge
filelock                  3.6.0              pyhd8ed1ab_0    conda-forge
glob2                     0.7                        py_0    conda-forge
icu                       69.1                 h9c3ff4c_0    conda-forge
idna                      3.3                pyhd8ed1ab_0    conda-forge
jinja2                    3.0.3              pyhd8ed1ab_0    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
krb5                      1.19.2               h3790be6_4    conda-forge
ld_impl_linux-64          2.36.1               hea4e1c9_2    conda-forge
libarchive                3.5.2                hccf745f_1    conda-forge
libcurl                   7.82.0               h7bff187_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc-ng                 11.2.0              h1d223b6_13    conda-forge
libgomp                   11.2.0              h1d223b6_13    conda-forge
libiconv                  1.16                 h516909a_0    conda-forge
liblief                   0.11.5               h9c3ff4c_1    conda-forge
libmamba                  0.22.1               h9c208ef_0    conda-forge
libmambapy                0.22.1          py310hed043b8_0    conda-forge
libnghttp2                1.47.0               h727a467_0    conda-forge
libnsl                    2.0.0                h7f98852_0    conda-forge
libsolv                   0.7.19               h780b84a_5    conda-forge
libssh2                   1.10.0               ha56f1ee_2    conda-forge
libstdcxx-ng              11.2.0              he4da1e4_13    conda-forge
libuuid                   2.32.1            h7f98852_1000    conda-forge
libxml2                   2.9.12               h885dcf4_1    conda-forge
libzlib                   1.2.11            h36c2ea0_1013    conda-forge
lz4-c                     1.9.3                h9c3ff4c_1    conda-forge
lzo                       2.10              h516909a_1000    conda-forge
mamba                     0.22.1          py310hf87f941_0    conda-forge
markupsafe                2.1.0           py310h5764c6d_1    conda-forge
ncurses                   6.3                  h9c3ff4c_0    conda-forge
openssl                   1.1.1l               h7f98852_0    conda-forge
patchelf                  0.14.5               h58526e2_0    conda-forge
pip                       22.0.4             pyhd8ed1ab_0    conda-forge
pkginfo                   1.8.2              pyhd8ed1ab_0    conda-forge
psutil                    5.9.0           py310h6acc77f_0    conda-forge
py-lief                   0.11.5          py310h122e73d_1    conda-forge
pybind11-abi              4                    hd8ed1ab_3    conda-forge
pycosat                   0.6.3           py310h6acc77f_1009    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pyopenssl                 22.0.0             pyhd8ed1ab_0    conda-forge
pysocks                   1.7.1           py310hff52083_4    conda-forge
python                    3.10.2          h85951f9_4_cpython    conda-forge
python-libarchive-c       4.0             py310hff52083_0    conda-forge
python_abi                3.10                    2_cp310    conda-forge
pytz                      2021.3             pyhd8ed1ab_0    conda-forge
pyyaml                    6.0             py310h6acc77f_3    conda-forge
readline                  8.1                  h46c0cb4_0    conda-forge
reproc                    14.2.3               h7f98852_0    conda-forge
reproc-cpp                14.2.3               h9c3ff4c_0    conda-forge
requests                  2.27.1             pyhd8ed1ab_0    conda-forge
ripgrep                   13.0.0               h2f28480_2    conda-forge
ruamel_yaml               0.15.80         py310h6acc77f_1006    conda-forge
setuptools                60.9.3          py310hff52083_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
soupsieve                 2.3.1              pyhd8ed1ab_0    conda-forge
sqlite                    3.37.0               h9cd32fc_0    conda-forge
tk                        8.6.12               h27826a3_0    conda-forge
tqdm                      4.63.0             pyhd8ed1ab_0    conda-forge
tzdata                    2021e                he74cb21_0    conda-forge
urllib3                   1.26.8             pyhd8ed1ab_1    conda-forge
wheel                     0.37.1             pyhd8ed1ab_0    conda-forge
xz                        5.2.5                h516909a_1    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
yaml-cpp                  0.6.3                he1b5a44_4    conda-forge
zlib                      1.2.11            h36c2ea0_1013    conda-forge
zstd                      1.5.2                ha95c52a_0    conda-forge

Environment info

active environment : build
    active env location : /home/wasonj/miniconda3/envs/build
            shell level : 1
       user config file : /home/wasonj/.condarc
 populated config files : /home/wasonj/.condarc
          conda version : 4.11.0
    conda-build version : not installed
         python version : 3.9.10.final.0
       virtual packages : __linux=4.4.0=0
                          __glibc=2.31=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /home/wasonj/miniconda3  (writable)
      conda av data dir : /home/wasonj/miniconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /home/wasonj/miniconda3/pkgs
                          /home/wasonj/.conda/pkgs
       envs directories : /home/wasonj/miniconda3/envs
                          /home/wasonj/.conda/envs
               platform : linux-64
             user-agent : conda/4.11.0 requests/2.27.1 CPython/3.9.10 Linux/4.4.0-19041-Microsoft ubuntu/20.04.3 glibc/2.31
                UID:GID : 1000:1000
             netrc file : None
           offline mode : False
@johnwason johnwason added the bug label Mar 12, 2022
@Tobias-Fischer
Copy link

Are all your tesseract packages built for jsoncpp=1.9.5? Also do you have the mamba output - it's better readable for version conflicts than the conda one

@johnwason
Copy link
Contributor Author

johnwason commented Mar 12, 2022 •
edited
Loading

Here is the output from mambabuild:

Mamba failed to solve:
 - libstdcxx-ng >=10.3.0
 - jsoncpp
 - boost-cpp 1.74.0.*
 - eigen
 - tesseract-robotics-environment
 - jsoncpp 1.9.5.*
 - tesseract-robotics-visualization
 - console_bridge
 - libgcc-ng >=10.3.0
 - boost-cpp

with channels:

The reported errors are:
- Encountered problems while solving:
-   - package tesseract-robotics-environment-0.8.3-ha7e12ad_1 requires tesseract-robotics-urdf, but none of the providers can be installed
-
Traceback (most recent call last):
  File "/home/wasonj/miniconda3/envs/build/lib/python3.10/site-packages/boa/cli/mambabuild.py", line 124, in mamba_get_install_actions
    solution = solver.solve_for_action(_specs, prefix)
  File "/home/wasonj/miniconda3/envs/build/lib/python3.10/site-packages/boa/core/solver.py", line 228, in solve_for_action
    t = self.solve(specs)
  File "/home/wasonj/miniconda3/envs/build/lib/python3.10/site-packages/boa/core/solver.py", line 216, in solve
    raise RuntimeError("Solver could not find solution." + error_string)
RuntimeError: Solver could not find solution.Mamba failed to solve:
 - libstdcxx-ng >=10.3.0
 - jsoncpp
 - boost-cpp 1.74.0.*
 - eigen
 - tesseract-robotics-environment
 - jsoncpp 1.9.5.*
 - tesseract-robotics-visualization
 - console_bridge
 - libgcc-ng >=10.3.0
 - boost-cpp

with channels:

The reported errors are:
- Encountered problems while solving:
-   - package tesseract-robotics-environment-0.8.3-ha7e12ad_1 requires tesseract-robotics-urdf, but none of the providers can be installed

I guess jsoncpp may not be the culprit, but the error shows up when jsoncpp is included.

I pushed the feedstock. The build error is here: https://github.com/johnwason/trajopt-feedstock/runs/5519924361?check_suite_focus=true The rest of the custom feedstocks can be found here: https://github.com/tesseract-robotics-packaging

@johnwason
Copy link
Contributor Author

The feedstock build seems to be working now?

https://github.com/tesseract-robotics-packaging/trajopt-feedstock/runs/5520302893?check_suite_focus=true

I'll close the issue since it seems to be working...

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
bug
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@Tobias-Fischer @johnwason