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Scaled does not return any hashes. #10

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etongit opened this issue Jan 31, 2025 · 0 comments
Open

Scaled does not return any hashes. #10

etongit opened this issue Jan 31, 2025 · 0 comments

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@etongit
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etongit commented Jan 31, 2025

I have a very large list of sequences for which scaling using Minhash does not return any result. Even when scaled < len(sequence)

Example sequences -
ATGGTTGGGATCGACGGACCGTAAATATCGGCATCGAGAACCCCGACCTTTGCGCCTTCAGCCGCTAACGCCAGCGCCAGGTTTACCGCCGTGGACGATTTCCCCACCCC
ATTAGTAAAAAACATGAGCATGGCCTGGCAAAATGTACTGTATATCGTGGCCGCGATATTAGTAATCATGCTGTGCGTCTTTACGCTGATCATTCGCGGTAAAGCCAAAAGCGA

Minimum code reproduce -

 mh = MinHash(n=0, ksize=40, scaled=100)
 mh.add_sequence(sequence, force=False)
 print(mh.hashes.keys())

This prints -

KeysView({})

Where as

mh = MinHash(n=100, ksize=40)

works just fine.

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