From abe19d872fa7bc0b2819981ee7c29a3dafd44100 Mon Sep 17 00:00:00 2001
From: "birajstha:construction_worker::penguin" <birajstha@gmail.com>
Date: Fri, 22 Nov 2024 15:16:30 -0500
Subject: [PATCH 1/2] adding prefix

---
 descriptors/afni/3dBlurToFWHM.json | 31 +++++++++++++++++-------------
 1 file changed, 18 insertions(+), 13 deletions(-)

diff --git a/descriptors/afni/3dBlurToFWHM.json b/descriptors/afni/3dBlurToFWHM.json
index 01ac2b50a..3583a556b 100644
--- a/descriptors/afni/3dBlurToFWHM.json
+++ b/descriptors/afni/3dBlurToFWHM.json
@@ -1,6 +1,6 @@
 {
   "name": "3dBlurToFWHM",
-  "command-line": "3dBlurToFWHM [AUTOMASK] [BLURMASTER] [FWHM] [FWHMXY] [IN_FILE] [MASK] [OUT_FILE] [OUTPUTTYPE]",
+  "command-line": "3dBlurToFWHM [AUTOMASK] [BLURMASTER] [FWHM] [FWHMXY] [IN_FILE] [MASK] [OUTPUTTYPE] [PREFIX]",
   "author": "AFNI Developers",
   "description": "Blurs a 'master' dataset until it reaches a specified FWHM smoothness (approximately).",
   "url": "https://afni.nimh.nih.gov/",
@@ -66,7 +66,20 @@
       "value-key": "[OUTPUTTYPE]",
       "description": "'nifti' or 'afni' or 'nifti_gz'. Afni output filetype.",
       "optional": true,
-      "value-choices": ["NIFTI", "AFNI", "NIFTI_GZ"]
+      "value-choices": [
+        "NIFTI",
+        "AFNI",
+        "NIFTI_GZ"
+      ]
+    },
+    {
+      "id": "prefix",
+      "name": "Prefix",
+      "type": "String",
+      "value-key": "[PREFIX]",
+      "command-line-flag": "-prefix",
+      "description": "Prefix for output dataset.",
+      "optional": true
     }
   ],
   "output-files": [
@@ -75,16 +88,8 @@
       "id": "out_file",
       "optional": true,
       "description": "Output image file name.",
-      "path-template": "[IN_FILE]_afni",
-      "value-key": "[OUT_FILE]",
-      "command-line-flag": "-prefix"
-    },
-    {
-      "name": "Out file",
-      "id": "out_file",
-      "path-template": "out_file",
-      "optional": true,
-      "description": "Output file."
+      "path-template": "[PREFIX]",
+      "value-key": "[PREFIX]"
     }
   ],
   "tool-version": "24.2.06",
@@ -97,4 +102,4 @@
     "domain": "neuroinformatics",
     "source": "nipype-interface"
   }
-}
+}
\ No newline at end of file

From adc665462aa612d3f8c42a321dd653d1bbfdcd97 Mon Sep 17 00:00:00 2001
From: Florian Rupprecht <33600480+nx10@users.noreply.github.com>
Date: Fri, 22 Nov 2024 19:54:47 -0500
Subject: [PATCH 2/2] Remove tags

---
 descriptors/afni/3dBlurToFWHM.json | 6 +-----
 1 file changed, 1 insertion(+), 5 deletions(-)

diff --git a/descriptors/afni/3dBlurToFWHM.json b/descriptors/afni/3dBlurToFWHM.json
index 3583a556b..83f2e863c 100644
--- a/descriptors/afni/3dBlurToFWHM.json
+++ b/descriptors/afni/3dBlurToFWHM.json
@@ -97,9 +97,5 @@
   "container-image": {
     "type": "docker",
     "image": "afni/afni_make_build:AFNI_24.2.06"
-  },
-  "tags": {
-    "domain": "neuroinformatics",
-    "source": "nipype-interface"
   }
-}
\ No newline at end of file
+}