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ibox020719.py
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#Imports all necessary packages to run the experiment
from PyQt4 import QtCore, QtGui
import threading, sys
import time, os, InstrumentControl, datetime
import random
import cv2
import numpy as np
from numpy import *
from CameraGUI import ShowVideo, ImageViewer
from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg as FigureCanvas
from matplotlib.figure import Figure
#The following section controls the generation of the GUI. Only the relevant code
#that may need to be changed will be commented.
#-------------------------------------------------------------------------------
try:
import Queue
except:
import queue as Queue
try:
_fromUtf8 = QtCore.QString.fromUtf8
except AttributeError:
def _fromUtf8(s):
return s
try:
_encoding = QtGui.QApplication.UnicodeUTF8
def _translate(context, text, disambig):
return QtGui.QApplication.translate(context, text, disambig, _encoding)
except AttributeError:
def _translate(context, text, disambig):
return QtGui.QApplication.translate(context, text, disambig)
running = 0
class Ui_EmpathyTrialGUI(object):
def setupUi(self, EmpathyTrialGUI):
EmpathyTrialGUI.setObjectName(_fromUtf8("EmpathyTrialGUI"))
EmpathyTrialGUI.resize(844, 283)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.MinimumExpanding, QtGui.QSizePolicy.Preferred)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(EmpathyTrialGUI.sizePolicy().hasHeightForWidth())
EmpathyTrialGUI.setSizePolicy(sizePolicy)
EmpathyTrialGUI.setLayoutDirection(QtCore.Qt.LeftToRight)
self.centralwidget = QtGui.QWidget(EmpathyTrialGUI)
self.centralwidget.setObjectName(_fromUtf8("centralwidget"))
self.horizontalLayout_4 = QtGui.QHBoxLayout(self.centralwidget)
self.horizontalLayout_4.setObjectName(_fromUtf8("horizontalLayout_4"))
self.verticalLayout_4 = QtGui.QVBoxLayout()
self.verticalLayout_4.setObjectName(_fromUtf8("verticalLayout_4"))
self.Icon = QtGui.QLabel(self.centralwidget)
self.image = QtGui.QImage()
self.Icon.setText(_fromUtf8(""))
self.Icon.setPixmap(QtGui.QPixmap(_fromUtf8("C:/Python27/Lib/site-packages/PyQt4/Resources/ICON.bmp")))
self.Icon.setObjectName(_fromUtf8("Icon"))
self.verticalLayout_4.addWidget(self.Icon)
self.line_2 = QtGui.QFrame(self.centralwidget)
self.line_2.setFrameShape(QtGui.QFrame.HLine)
self.line_2.setFrameShadow(QtGui.QFrame.Sunken)
self.line_2.setObjectName(_fromUtf8("line_2"))
self.verticalLayout_4.addWidget(self.line_2)
self.Madeby = QtGui.QLabel(self.centralwidget)
self.Madeby.setObjectName(_fromUtf8("Madeby"))
self.verticalLayout_4.addWidget(self.Madeby)
self.horizontalLayout_4.addLayout(self.verticalLayout_4)
self.horizontalLayout = QtGui.QHBoxLayout()
self.horizontalLayout.setObjectName(_fromUtf8("horizontalLayout"))
self.line_3 = QtGui.QFrame(self.centralwidget)
self.line_3.setFrameShape(QtGui.QFrame.VLine)
self.line_3.setFrameShadow(QtGui.QFrame.Sunken)
self.line_3.setObjectName(_fromUtf8("line_3"))
self.horizontalLayout.addWidget(self.line_3)
self.verticalLayout_2 = QtGui.QVBoxLayout()
self.verticalLayout_2.setObjectName(_fromUtf8("verticalLayout_2"))
self.gridLayout = QtGui.QGridLayout()
self.gridLayout.setObjectName(_fromUtf8("gridLayout"))
self.StartTimer = QtGui.QLCDNumber(self.centralwidget)
self.StartTimer.setFrameShadow(QtGui.QFrame.Plain)
self.StartTimer.setSegmentStyle(QtGui.QLCDNumber.Flat)
self.StartTimer.setObjectName(_fromUtf8("StartTimer"))
self.gridLayout.addWidget(self.StartTimer, 2, 0, 1, 1)
self.Temp = QtGui.QLCDNumber(self.centralwidget) # Temp display
self.Temp.setFrameShadow(QtGui.QFrame.Plain)
self.Temp.setSegmentStyle(QtGui.QLCDNumber.Flat)
self.Temp.setObjectName(_fromUtf8("Temp"))
self.gridLayout.addWidget(self.Temp, 4, 0, 1, 1)
self.label_11 = QtGui.QLabel(self.centralwidget)
self.label_11.setObjectName(_fromUtf8("label_11"))
self.gridLayout.addWidget(self.label_11, 3, 0, 1, 1)
self.label_10 = QtGui.QLabel(self.centralwidget)
self.label_10.setObjectName(_fromUtf8("label_10"))
self.gridLayout.addWidget(self.label_10, 0, 1, 1, 1)
self.label_9 = QtGui.QLabel(self.centralwidget)
self.label_9.setObjectName(_fromUtf8("label_9"))
self.gridLayout.addWidget(self.label_9, 0, 0, 1, 1)
self.lcdNumber = QtGui.QLCDNumber(self.centralwidget)
self.lcdNumber.setFrameShadow(QtGui.QFrame.Plain)
self.lcdNumber.setSegmentStyle(QtGui.QLCDNumber.Flat)
self.lcdNumber.setObjectName(_fromUtf8("lcdNumber"))
self.gridLayout.addWidget(self.lcdNumber, 2, 1, 1, 1)
self.trialcounter = QtGui.QLCDNumber(self.centralwidget)
self.trialcounter.setFrameShadow(QtGui.QFrame.Plain)
self.trialcounter.setSegmentStyle(QtGui.QLCDNumber.Flat)
self.trialcounter.setObjectName(_fromUtf8("trialcounter"))
self.gridLayout.addWidget(self.trialcounter, 4, 1, 1, 1)
self.label_13 = QtGui.QLabel(self.centralwidget)
self.label_13.setObjectName(_fromUtf8("label_11"))
self.gridLayout.addWidget(self.label_13, 3, 1, 1, 1)
self.verticalLayout_2.addLayout(self.gridLayout)
self.label_12 = QtGui.QLabel(self.centralwidget)
self.label_12.setText(_fromUtf8(""))
self.label_12.setPixmap(QtGui.QPixmap(_fromUtf8("C:/Python27/Lib/site-packages/PyQt4/Resources/pic1.png")))
self.label_12.setObjectName(_fromUtf8("label_12"))
self.verticalLayout_2.addWidget(self.label_12)
self.horizontalLayout.addLayout(self.verticalLayout_2)
self.line = QtGui.QFrame(self.centralwidget)
self.line.setFrameShape(QtGui.QFrame.VLine)
self.line.setFrameShadow(QtGui.QFrame.Sunken)
self.line.setObjectName(_fromUtf8("line"))
self.horizontalLayout.addWidget(self.line)
self.verticalLayout = QtGui.QVBoxLayout()
self.verticalLayout.setObjectName(_fromUtf8("verticalLayout"))
self.label_8 = QtGui.QLabel(self.centralwidget)
self.label_8.setObjectName(_fromUtf8("label_8"))
self.verticalLayout.addWidget(self.label_8)
self.line_5 = QtGui.QFrame(self.centralwidget)
self.line_5.setFrameShape(QtGui.QFrame.HLine)
self.line_5.setFrameShadow(QtGui.QFrame.Sunken)
self.line_5.setObjectName(_fromUtf8("line_5"))
self.verticalLayout.addWidget(self.line_5)
self.formLayout = QtGui.QFormLayout()
self.formLayout.setFieldGrowthPolicy(QtGui.QFormLayout.AllNonFixedFieldsGrow)
self.formLayout.setObjectName(_fromUtf8("formLayout"))
self.label_6 = QtGui.QLabel(self.centralwidget)
self.label_6.setObjectName(_fromUtf8("label_6"))
self.formLayout.setWidget(0, QtGui.QFormLayout.LabelRole, self.label_6)
self.UserInput = QtGui.QLineEdit(self.centralwidget)
self.UserInput.setObjectName(_fromUtf8("UserInput"))
self.formLayout.setWidget(0, QtGui.QFormLayout.FieldRole, self.UserInput)
self.label_2 = QtGui.QLabel(self.centralwidget)
self.label_2.setObjectName(_fromUtf8("label_2"))
self.formLayout.setWidget(1, QtGui.QFormLayout.LabelRole, self.label_2)
self.ActiveInput = QtGui.QLineEdit(self.centralwidget)
self.ActiveInput.setText(_fromUtf8(""))
self.ActiveInput.setObjectName(_fromUtf8("ActiveInput"))
self.formLayout.setWidget(1, QtGui.QFormLayout.FieldRole, self.ActiveInput)
self.label_3 = QtGui.QLabel(self.centralwidget)
self.label_3.setObjectName(_fromUtf8("label_3"))
self.formLayout.setWidget(2, QtGui.QFormLayout.LabelRole, self.label_3)
self.PassiveInput = QtGui.QLineEdit(self.centralwidget)
self.PassiveInput.setText(_fromUtf8(""))
self.PassiveInput.setObjectName(_fromUtf8("PassiveInput"))
self.formLayout.setWidget(2, QtGui.QFormLayout.FieldRole, self.PassiveInput)
self.label = QtGui.QLabel(self.centralwidget)
self.label.setObjectName(_fromUtf8("label"))
self.formLayout.setWidget(3, QtGui.QFormLayout.LabelRole, self.label)
self.horizontalLayout_2 = QtGui.QHBoxLayout()
self.horizontalLayout_2.setObjectName(_fromUtf8("horizontalLayout_2"))
self.StageNum = QtGui.QComboBox(self.centralwidget)
self.StageNum.setObjectName(_fromUtf8("StageNum"))
# number of possible stages in GUI
self.StageNum.addItem(_fromUtf8(""))
self.StageNum.addItem(_fromUtf8(""))
self.StageNum.addItem(_fromUtf8(""))
self.StageNum.addItem(_fromUtf8(""))
self.StageNum.addItem(_fromUtf8(""))
#added
self.StageNum.addItem(_fromUtf8(""))
self.StageNum.addItem(_fromUtf8(""))
self.StageNum.addItem(_fromUtf8(""))
self.StageNum.addItem(_fromUtf8(""))
self.StageNum.addItem(_fromUtf8(""))
self.horizontalLayout_2.addWidget(self.StageNum)
self.pushButton = QtGui.QPushButton(self.centralwidget)
sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Minimum, QtGui.QSizePolicy.Minimum)
sizePolicy.setHorizontalStretch(0)
sizePolicy.setVerticalStretch(0)
sizePolicy.setHeightForWidth(self.pushButton.sizePolicy().hasHeightForWidth())
self.pushButton.setSizePolicy(sizePolicy)
self.pushButton.setObjectName(_fromUtf8("pushButton"))
self.horizontalLayout_2.addWidget(self.pushButton)
self.formLayout.setLayout(3, QtGui.QFormLayout.FieldRole, self.horizontalLayout_2)
self.label_4 = QtGui.QLabel(self.centralwidget)
self.label_4.setObjectName(_fromUtf8("label_4"))
self.formLayout.setWidget(5, QtGui.QFormLayout.LabelRole, self.label_4)
self.TrialNum = QtGui.QLineEdit(self.centralwidget)
self.TrialNum.setObjectName(_fromUtf8("TrialNum"))
self.formLayout.setWidget(5, QtGui.QFormLayout.FieldRole, self.TrialNum)
self.label_14 = QtGui.QLabel(self.centralwidget)
self.label_14.setObjectName(_fromUtf8("label_4"))
self.formLayout.setWidget(6, QtGui.QFormLayout.LabelRole, self.label_14)
self.delaytime = QtGui.QLineEdit(self.centralwidget)
self.delaytime.setObjectName(_fromUtf8("TrialNum"))
self.formLayout.setWidget(6, QtGui.QFormLayout.FieldRole, self.delaytime)
self.label_7 = QtGui.QLabel(self.centralwidget)
self.label_7.setObjectName(_fromUtf8("label_7"))
self.formLayout.setWidget(7, QtGui.QFormLayout.LabelRole, self.label_7)
self.NameInput = QtGui.QLineEdit(self.centralwidget)
self.NameInput.setText(_fromUtf8(""))
self.NameInput.setObjectName(_fromUtf8("NameInput"))
self.formLayout.setWidget(7, QtGui.QFormLayout.FieldRole, self.NameInput)
self.verticalLayout.addLayout(self.formLayout)
self.line_4 = QtGui.QFrame(self.centralwidget)
self.line_4.setFrameShape(QtGui.QFrame.HLine)
self.line_4.setFrameShadow(QtGui.QFrame.Sunken)
self.line_4.setObjectName(_fromUtf8("line_4"))
self.verticalLayout.addWidget(self.line_4)
spacerItem = QtGui.QSpacerItem(20, 40, QtGui.QSizePolicy.Minimum, QtGui.QSizePolicy.Expanding)
self.verticalLayout.addItem(spacerItem)
self.TrialStart = QtGui.QPushButton(self.centralwidget)
self.TrialStart.setObjectName(_fromUtf8("TrialStart"))
self.verticalLayout.addWidget(self.TrialStart)
spacerItem1 = QtGui.QSpacerItem(20, 40, QtGui.QSizePolicy.Minimum, QtGui.QSizePolicy.Expanding)
self.verticalLayout.addItem(spacerItem1)
self.pushButton_2 = QtGui.QPushButton(self.centralwidget)
self.pushButton_2.setObjectName(_fromUtf8("pushButton_2"))
self.verticalLayout.addWidget(self.pushButton_2)
self.horizontalLayout.addLayout(self.verticalLayout)
self.horizontalLayout_4.addLayout(self.horizontalLayout)
EmpathyTrialGUI.setCentralWidget(self.centralwidget)
self.retranslateUi(EmpathyTrialGUI)
QtCore.QMetaObject.connectSlotsByName(EmpathyTrialGUI)
self.timer = QtCore.QTimer()
self.timer.timeout.connect(self.GUIManager)
def retranslateUi(self, EmpathyTrialGUI):
EmpathyTrialGUI.setWindowTitle(_translate("EmpathyTrialGUI", "EmpathyTrialGUI", None))
self.Madeby.setText(_translate("EmpathyTrialGUI", "Created and Developed by: Teryn Johnson", None))
self.label_10.setText(_translate("EmpathyTrialGUI", "Seconds Since Trial Start:", None))
self.label_9.setText(_translate("EmpathyTrialGUI", "Seconds Since Experiment Start:", None))
self.label_8.setText(_translate("EmpathyTrialGUI", "Experimental Parameter Input:", None))
self.label_11.setText(_translate("EmpathyTrialGUI", "Current Temperature:", None)) # Temp display
self.label_13.setText(_translate("EmpathyTrialGUI", "Trial Number:", None))
self.label_14.setText(_translate("EmpathyTrialGUI", "Delay Time:", None))
self.label_6.setText(_translate("EmpathyTrialGUI", "User:", None))
self.UserInput.setText(_translate("EmpathyTrialGUI", "Nicole", None))
self.label_2.setText(_translate("EmpathyTrialGUI", "Active Rat ID:", None))
self.label_3.setText(_translate("EmpathyTrialGUI", "Passive Rat ID:", None))
self.label.setText(_translate("EmpathyTrialGUI", "Stage Number:", None))
# creates the availible stage names for drop down menu in GUI
self.StageNum.setItemText(0, _translate("EmpathyTrialGUI", "11", None))
self.StageNum.setItemText(1, _translate("EmpathyTrialGUI", "12", None))
self.StageNum.setItemText(2, _translate("EmpathyTrialGUI", "21", None))
self.StageNum.setItemText(3, _translate("EmpathyTrialGUI", "22", None))
self.StageNum.setItemText(4, _translate("EmpathyTrialGUI", "23", None))
#added code
self.StageNum.setItemText(5, _translate("EmpathyTrialGUI", "24", None))
self.StageNum.setItemText(6, _translate("EmpathyTrialGUI", "31", None))
self.StageNum.setItemText(7, _translate("EmpathyTrialGUI", "32", None))
self.StageNum.setItemText(8, _translate("EmpathyTrialGUI", "33", None))
self.StageNum.setItemText(9, _translate("EmpathyTrialGUI", "34", None))
self.pushButton.setText(_translate("EmpathyTrialGUI", "?", None))
self.label_4.setText(_translate("EmpathyTrialGUI", "# of Trials:", None))
# self.TrialNum.setText(_translate("EmpathyTrialGUI", "10", None))
self.label_7.setText(_translate("EmpathyTrialGUI", "Filename:", None))
self.TrialStart.setText(_translate("EmpathyTrialGUI", "Start Trial", None))
self.pushButton_2.setText(_translate("EmpathyTrialGUI", "End Current Trial", None))
self.TrialStart.clicked.connect(self.experimentrun)
self.pushButton.clicked.connect(self.helpmessage)
self.pushButton_2.clicked.connect(self.skiptrial)
#End GUI generation portion of the code
#-------------------------------------------------------------------------------
#This controls the message that is displayed when the help button is clicked
#on the GUI
def helpmessage(self):
print "1 - Shaping Protocol (One nose port, air on middle chamber)"
print "2 - Testing Protocol (Two nose ports, air on middle and left chamber)"
#This controls the actual run of the experiment. When the "Start Trial" button
#is clicked, it runs this script.
def experimentrun(self):
os.chdir('C:\Users\Chiba Lab\Desktop\Data') #Changes file save location
global experimentseconds, trialseconds, savename, camera, cameraoutput, timestamp
#Pulls all information from the input windows on GUI
activerat = self.ActiveInput.text()
passiverat = self.PassiveInput.text()
savename = self.NameInput.text()
user = self.UserInput.text()
num = int(self.TrialNum.text())
stage = str(self.StageNum.currentText())
delay = int(self.delaytime.text())
if ((int(stage) == 11 or int(stage) == 12 or int(stage) == 21 or int(stage) == 22 or int(stage) == 23 or int(stage) == 24 or int(stage) == 31 or int(stage) ==32 or int(stage) ==33 or int(stage) == 34 or int(stage) == 6 and num % 2 == 0) or int(stage) == 1): #Ensures that stage 2 and 3 saves properly
#Connects the camera to the GUI and starts recording
camera = cv2.VideoCapture(0)
camera.set(3, 1920)
camera.set(4, 1080)
#camera.set(3, 4096)
#camera.set(4, 2160)
time.sleep(2)
#camera.set(3, 1280)
#camera.set(4, 720)
camera.set(5, 15.0)
fourcc = cv2.VideoWriter_fourcc(*'XVID')
vid_name = str(savename)+'.avi'
#cameraoutput = cv2.VideoWriter(vid_name, fourcc, 30.0, (640,480))
cameraoutput = cv2.VideoWriter(vid_name, fourcc, 15.0, (1920,1080))
#cameraoutput = cv2.VideoWriter(vid_name, fourcc, 15.0, (4096,2160))
self.Pacer() #Starts the "pacing" for the experiment timing
experimentseconds = 0
trialseconds = 0
#Starts the experiment on a seperate thread. Necessary for parallel processing
experimentthread = threading.Thread(None, self.experiment, None, (activerat, passiverat, savename, user, num, stage,delay))
experimentthread.start()
timestamp = []
#tempthread = threading.Thread(None, self.temperaturesave, None, ())
#tempthread.start()
elif (int(stage) == 7 and num % 3 == 0):
#Connects the camera to the GUI and starts recording
camera = cv2.VideoCapture(0)
camera.set(3, 1920)
camera.set(4, 1080)
#camera.set(3, 4096)
#camera.set(4, 2160)
time.sleep(2)
#camera.set(3, 1280)
#camera.set(4, 720)
camera.set(5, 15.0)
fourcc = cv2.VideoWriter_fourcc(*'XVID')
vid_name = str(savename)+'.avi'
#cameraoutput = cv2.VideoWriter(vid_name, fourcc, 30.0, (640,480))
cameraoutput = cv2.VideoWriter(vid_name, fourcc, 15.0, (1920,1080))
#cameraoutput = cv2.VideoWriter(vid_name, fourcc, 15.0, (4096,2160))
self.Pacer() #Starts the "pacing" for the experiment timing
experimentseconds = 0
trialseconds = 0
#Starts the experiment on a seperate thread. Necessary for parallel processing
experimentthread = threading.Thread(None, self.experiment, None, (activerat, passiverat, savename, user, num, stage,delay))
experimentthread.start()
timestamp = []
#tempthread = threading.Thread(None, self.temperaturesave, None, ())
#tempthread.start()
else:
print "The number of trials for stage 2, 3, 4, 5, and 6 must be an even number"
print "7 must be divisable by 3."
#This controls the end current trial button.
def skiptrial(self):
global IRsensorque
IRsensorque.put(30)
#This continuously checks the arduino board for sensor signals.
def sensorcheck(self):
global StepperControl
Trig = 0
while Trig != 25:
Trig = int(StepperControl.LeverCheck())
if Trig == 5:
IRsensorque.put(5)
elif Trig == 10:
IRsensorque.put(10)
elif Trig == 15:
IRsensorque.put(15)
elif Trig == 20:
IRsensorque.put(20)
elif Trig == 50:
IRsensorque.put(50)
elif Trig == 100:
IRsensorque.put(100)
elif Trig == 150:
IRsensorque.put(150)
elif Trig == 200:
IRsensorque.put(200)
#This is responsible for recording the temperature of the box throughout the experiment
#def temperaturesave(self):
#global Stepper1, experimentendque, savename
#file_object3=open(savename + '_temp.txt','w')
#end = 0
#tempcount = 0
#while end != 1:
#tempq = Stepper1.LeverCheck()
#tempcount = tempcount + 1
#if tempq != '':
#print >> file_object3, tempq,
#if tempcount > 10:
#self.Temp.setDigitCount(len(tempq))
#self.Temp.display(tempq)
#tempcount = 0
#if(not experimentendque.empty()):
#end = experimentendque.get()
#file_object3.close()
#This paces the experiment by seconds. Used for the timers.
def Pacer(self):
global experimentseconds
experimentseconds = 0
self.timer.start(1)
#This controls everything related to the GUI
def GUIManager(self):
global imageque, timestamp, timerthread, camera, cameraoutput
#This controls the image that is displayed on the GUI
if(not imageque.empty()):
imageID = imageque.get()
if(imageID ==0):
self.label_12.setPixmap(QtGui.QPixmap(_fromUtf8("C:/Python27/Lib/site-packages/PyQt4/Resources/dual_nosepoke_CENTER_cartoon_template.png")))
elif(imageID == 1):
self.label_12.setPixmap(QtGui.QPixmap(_fromUtf8("C:/Python27/Lib/site-packages/PyQt4/Resources/dual_nosepoke_CENTER_all_red.png")))
elif(imageID == 2):
self.label_12.setPixmap(QtGui.QPixmap(_fromUtf8("C:/Python27/Lib/site-packages/PyQt4/Resources/dual_nosepoke_CENTER_user_end_bottom_left.png")))
elif(imageID == 3):
self.label_12.setPixmap(QtGui.QPixmap(_fromUtf8("C:/Python27/Lib/site-packages/PyQt4/Resources/dual_nosepoke_CENTER_user_end_bottom_right.png")))
elif(imageID == 4):
self.label_12.setPixmap(QtGui.QPixmap(_fromUtf8("C:/Python27/Lib/site-packages/PyQt4/Resources/dual_nosepoke_CENTER_user_end_top_left.png")))
elif(imageID == 5):
self.label_12.setPixmap(QtGui.QPixmap(_fromUtf8("C:/Python27/Lib/site-packages/PyQt4/Resources/dual_nosepoke_CENTER_user_end_top_right.png")))
elif(imageID == 6):
self.label_12.setPixmap(QtGui.QPixmap(_fromUtf8("C:/Python27/Lib/site-packages/PyQt4/Resources/dual_nosepoke_LEFT_all_red.png")))
elif(imageID == 7):
self.label_12.setPixmap(QtGui.QPixmap(_fromUtf8("C:/Python27/Lib/site-packages/PyQt4/Resources/dual_nosepoke_LEFT_bottom_left.png")))
elif(imageID == 8):
self.label_12.setPixmap(QtGui.QPixmap(_fromUtf8("C:/Python27/Lib/site-packages/PyQt4/Resources/dual_nosepoke_LEFT_bottom_right.png")))
elif(imageID == 9):
self.label_12.setPixmap(QtGui.QPixmap(_fromUtf8("C:/Python27/Lib/site-packages/PyQt4/Resources/dual_nosepoke_LEFT_top_left.png")))
elif(imageID == 10):
self.label_12.setPixmap(QtGui.QPixmap(_fromUtf8("C:/Python27/Lib/site-packages/PyQt4/Resources/dual_nosepoke_LEFT_top_right.png")))
elif(imageID == 11):
self.label_12.setPixmap(QtGui.QPixmap(_fromUtf8("C:/Python27/Lib/site-packages/PyQt4/Resources/dual_nosepoke_RIGHT_all_red.png")))
elif(imageID == 12):
self.label_12.setPixmap(QtGui.QPixmap(_fromUtf8("C:/Python27/Lib/site-packages/PyQt4/Resources/dual_nosepoke_RIGHT_bottom_left.png")))
elif(imageID == 13):
self.label_12.setPixmap(QtGui.QPixmap(_fromUtf8("C:/Python27/Lib/site-packages/PyQt4/Resources/dual_nosepoke_RIGHT_bottom_right.png")))
elif(imageID == 14):
self.label_12.setPixmap(QtGui.QPixmap(_fromUtf8("C:/Python27/Lib/site-packages/PyQt4/Resources/dual_nosepoke_RIGHT_top_left.png")))
elif(imageID == 15):
self.label_12.setPixmap(QtGui.QPixmap(_fromUtf8("C:/Python27/Lib/site-packages/PyQt4/Resources/dual_nosepoke_RIGHT_top_right.png")))
timestamp = []
#This controls the experiment timer
if(not experimentcountque.empty()):
exphold = experimentcountque.get()
timehold1 = "{0}".format(exphold)
timestamp.append(str(timehold1))
self.StartTimer.setDigitCount(len(timehold1))
self.StartTimer.display(timehold1)
#This controls the trial timer
if(not trialcountque.empty()):
trialhold = trialcountque.get()
timehold2 = "{0}".format(trialhold)
self.lcdNumber.setDigitCount(len(timehold2))
self.lcdNumber.display(timehold2)
if(not timerthread.empty()):
self.timer.stop()
#This controls the camera display on the GUI
ret, image = camera.read()
cameraoutput.write(image)
resized_image = cv2.resize(image, (1280,720))
#resized_image = cv2.resize(image, (640,480))
color_swapped_image = cv2.cvtColor(resized_image, cv2.COLOR_BGR2RGB)
height, width, channel = color_swapped_image.shape
bytesPerLine = 3 * width
QImg = QtGui.QImage(color_swapped_image.data, width, height, bytesPerLine, QtGui.QImage.Format_RGB888)
#QImg = QtGui.QImage(resized_image.data, 640, 480, bytesPerLine, QtGui.QImage.Format_RGB888)
pixmap = QtGui.QPixmap.fromImage(QImg)
self.Icon.setPixmap(pixmap)
#This is the definition that controls the pacing for the experiment timer
def ExperimentTime(self):
global experimenttimeque, experimentseconds, experimentcountque
experimentstop = 0
while experimentstop != 1:
if(not experimenttimeque.empty()):
experimentstop = experimenttimeque.get()
time.sleep(1)
experimentseconds += 1
experimentcountque.put(experimentseconds)
#This is the definition that controls the pacing for the trial timer
def Trialtime(self):
global trialtimeque, trialseconds, trialcountque
trialstop = 0
trialseconds = 0
while trialstop != 2:
if(not trialtimeque.empty()):
trialstop = trialtimeque.get()
time.sleep(1)
trialseconds += 1
trialcountque.put(trialseconds)
#This is the definition that controls the actual control of the experiment
def experiment(self, activerat, passiverat, savename, user, trialnum, stagenum,delay):
global imageque, StepperControl, experimenttimethread, count, cameraoutput, camera
savefilespacing = 10
#Starts the thread responsible for looking at the sensor.
sensorthread = threading.Thread(None, self.sensorcheck, None, ())
sensorthread.start()
experimenttimestart = str(datetime.datetime.now())
#Creates the files used for saving the data and saves all relevant information
#in the header file.
datafile=open(savename + '.txt','w')
headerfile=open(savename + '.hdr','w')
print >> headerfile, savename
print >> headerfile, experimenttimestart
print >> headerfile, 'User:'
print >> headerfile, user
print >> headerfile, 'Stage Number:'
print >> headerfile, stagenum
print >> headerfile, 'Active Rat ID:'
print >> headerfile, activerat
print >> headerfile, 'Passive Rat ID:'
print >> headerfile, passiverat
print >> headerfile, 'Number of Trials:'
print >> headerfile, trialnum
headerfile.close()
### Start Stages code
#controls randomness in the stages
if stagenum == '23' or stagenum == '24':
TrialId = []
for i in range(0,int(trialnum)/2):
TrialId_temp = [1,3]
random.shuffle(TrialId_temp)
TrialId.extend(TrialId_temp)
print TrialId
if stagenum == '33' or stagenum == '34':
TrialId = []
for i in range(0,int(trialnum)/2):
TrialId_temp = [1,2]
random.shuffle(TrialId_temp)
TrialId.extend(TrialId_temp)
print TrialId
if stagenum == '4':
TrialId = [1,2]
TrialId = TrialId*(int(trialnum)/2)
random.shuffle(TrialId)
print TrialId
if stagenum == '7':
TrialId = [1,2,3]
for i in range(0,int(trialnum)/3):
TrialId_temp = [1,2,3]
random.shuffle(TrialId_temp)
TrialId.extend(TrialId_temp)
print TrialId
# Port number notes: Front left = 150, Front right = 15, Back left = 200, Back right = 20.
nosepokeIDandTime=[0, 0]
trialstarttimeandID=[0, 0]
start = datetime.datetime.now()
#Starts the experiment timer
experimenttimethread = threading.Thread(None, self.ExperimentTime, None, ())
experimenttimethread.start()
trialcount =0
for x in range(0,trialnum):
## Stage 11
# stage number 11 is air on self only. Port numbers 200 and 15 turn of airflow.
if stagenum == '11':
#Controls the display for the trial counter
trialcount=trialcount+1
trialdisplay = "{0}".format(trialcount)
self.trialcounter.setDigitCount(len(trialdisplay))
self.trialcounter.display(trialdisplay)
StepperControl.SetPosition(1,1.8,1400) #Moves the motors
imageque.put(1)
#Starts the trial timer
trialtimerthread = threading.Thread(None, self.Trialtime, None, ())
trialtimerthread.start()
move = datetime.datetime.now()
delta = move - start
trialstarttimeandID[0] = 1
trialstarttimeandID[1] = delta.total_seconds()
print >> datafile, str(trialstarttimeandID[0]), str(trialstarttimeandID[1]).rjust(savefilespacing)
Trig = 0
#Clears the sensor data to ensure that the trial does not end prematurely
while(not IRsensorque.empty()):
CLOSE = IRsensorque.get()
#Actual trial. Continually searches for signal until recieved.
while Trig != 15 and Trig != 200 and Trig != 30: #and Trig != 20 and Trig != 150 and Trig != 200 and Trig != 30:
Trig = 0
if sensorthread.is_alive():
if(not IRsensorque.empty()):
Trig = IRsensorque.get()
if Trig == 20:
nosepokeIDandTime[0]=20
press = datetime.datetime.now()
delta2 = press - start
nosepokeIDandTime[1] = delta2.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
elif Trig == 150:
nosepokeIDandTime[0]=150
press = datetime.datetime.now()
delta2 = press - start
nosepokeIDandTime[1] = delta2.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
else:
sensorthread.start()
if(not IRsensorque.empty()):
Trig = IRsensorque.get()
time.sleep(.01)
if Trig == 15:
imageque.put(3)
nosepokeIDandTime[0]=15
elif Trig == 200:
imageque.put(4)
nosepokeIDandTime[0]=200
elif Trig == 30:
#imageque.put(4)
nosepokeIDandTime[0]=30
IRsensorque.put(0)
press = datetime.datetime.now()
if trialtimerthread.is_alive():
trialtimeque.put(2)
else:
trialtimerthread.start()
trialtimeque.put(2)
delta1 = press - start
nosepokeIDandTime[1] = delta1.total_seconds()
print "Rat_Lever_Self was triggered at", nosepokeIDandTime[1]
StepperControl.SetPosition(1,1.8,0)
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
time.sleep(3)
imageque.put(0)
#Interim period
while(not IRsensorque.empty()):
CLOSE = IRsensorque.get()
if x != trialnum -1:
for i in range(0,(delay-3)*10):
time.sleep(.1)
Trig = 0
if sensorthread.is_alive():
if(not IRsensorque.empty()):
Trig = IRsensorque.get()
if Trig == 150:
nosepokeIDandTime[0]=-150
press = datetime.datetime.now()
delta3 = press - start
nosepokeIDandTime[1] = delta3.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
elif Trig == 200:
nosepokeIDandTime[0]=-200
press = datetime.datetime.now()
delta3 = press - start
nosepokeIDandTime[1] = delta3.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
elif Trig == 20:
nosepokeIDandTime[0]=-20
press = datetime.datetime.now()
delta3 = press - start
nosepokeIDandTime[1] = delta3.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
elif Trig == 15:
nosepokeIDandTime[0]=-15
press = datetime.datetime.now()
delta3 = press - start
nosepokeIDandTime[1] = delta3.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
else:
sensorthread.start()
if(not IRsensorque.empty()):
Trig = IRsensorque.get()
## Stage 12
# Stage-1 Conditon-2 (coded as stage 12)
# Airflow on self only. Ports 20 and 150 turn off air.
if stagenum == '12':
#Controls the display for the trial counter
trialcount=trialcount+1
trialdisplay = "{0}".format(trialcount)
self.trialcounter.setDigitCount(len(trialdisplay))
self.trialcounter.display(trialdisplay)
StepperControl.SetPosition(1,1.8,1400) #Moves the motors
imageque.put(1)
#Starts the trial timer
trialtimerthread = threading.Thread(None, self.Trialtime, None, ())
trialtimerthread.start()
move = datetime.datetime.now()
delta = move - start
trialstarttimeandID[0] = 1
trialstarttimeandID[1] = delta.total_seconds()
print >> datafile, str(trialstarttimeandID[0]), str(trialstarttimeandID[1]).rjust(savefilespacing)
Trig = 0
#Clears the sensor data to ensure that the trial does not end prematurely
while(not IRsensorque.empty()):
CLOSE = IRsensorque.get()
#Actual trial. Continually searches for signal until recieved.
while Trig != 150 and Trig != 20 and Trig != 30: #and Trig != 20 and Trig != 150 and Trig != 200 and Trig != 30:
Trig = 0
if sensorthread.is_alive():
if(not IRsensorque.empty()):
Trig = IRsensorque.get()
if Trig == 200:
nosepokeIDandTime[0]=200
press = datetime.datetime.now()
delta2 = press - start
nosepokeIDandTime[1] = delta2.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
elif Trig == 15:
nosepokeIDandTime[0]=15
press = datetime.datetime.now()
delta2 = press - start
nosepokeIDandTime[1] = delta2.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
else:
sensorthread.start()
if(not IRsensorque.empty()):
Trig = IRsensorque.get()
time.sleep(.01)
if Trig == 150:
imageque.put(5)
nosepokeIDandTime[0]=150
elif Trig == 20:
imageque.put(2)
nosepokeIDandTime[0]=20
elif Trig == 30:
imageque.put(4)
nosepokeIDandTime[0]=30
IRsensorque.put(0)
press = datetime.datetime.now()
if trialtimerthread.is_alive():
trialtimeque.put(2)
else:
trialtimerthread.start()
trialtimeque.put(2)
delta1 = press - start
nosepokeIDandTime[1] = delta1.total_seconds()
print "Rat_Lever_Self was triggered at", nosepokeIDandTime[1]
StepperControl.SetPosition(1,1.8,0)
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
time.sleep(3)
imageque.put(0)
#Interim period
while(not IRsensorque.empty()):
CLOSE = IRsensorque.get()
if x != trialnum -1:
for i in range(0,(delay-3)*10):
time.sleep(.1)
Trig = 0
if sensorthread.is_alive():
if(not IRsensorque.empty()):
Trig = IRsensorque.get()
if Trig == 150:
nosepokeIDandTime[0]=-150
press = datetime.datetime.now()
delta3 = press - start
nosepokeIDandTime[1] = delta3.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
elif Trig == 200:
nosepokeIDandTime[0]=-200
press = datetime.datetime.now()
delta3 = press - start
nosepokeIDandTime[1] = delta3.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
elif Trig == 20:
nosepokeIDandTime[0]=-20
press = datetime.datetime.now()
delta3 = press - start
nosepokeIDandTime[1] = delta3.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
elif Trig == 15:
nosepokeIDandTime[0]=-15
press = datetime.datetime.now()
delta3 = press - start
nosepokeIDandTime[1] = delta3.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
else:
sensorthread.start()
if(not IRsensorque.empty()):
Trig = IRsensorque.get()
## Stage 21
# Stage 21 is air on other (friend) only (Trial ID = 2, motor position -725). Port to turn off air is 20.
if stagenum == '21':
trialcount=trialcount+1
trialdisplay = "{0}".format(trialcount)
self.trialcounter.setDigitCount(len(trialdisplay))
self.trialcounter.display(trialdisplay)
StepperControl.SetPosition(1,1.8,-725)
trialtimerthread = threading.Thread(None, self.Trialtime, None, ())
trialtimerthread.start()
imageque.put(6)
move = datetime.datetime.now()
delta = move - start
trialstarttimeandID[0] = 3
trialstarttimeandID[1] = delta.total_seconds()
print >> datafile, str(trialstarttimeandID[0]), str(trialstarttimeandID[1]).rjust(savefilespacing)
Trig = 0
while(not IRsensorque.empty()):
CLOSE = IRsensorque.get()
while Trig != 20 and Trig != 30:
Trig = 0
if sensorthread.is_alive():
if(not IRsensorque.empty()):
Trig = IRsensorque.get()
if Trig == 150:
nosepokeIDandTime[0]=150
press = datetime.datetime.now()
delta2 = press - start
nosepokeIDandTime[1] = delta2.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
elif Trig == 200:
nosepokeIDandTime[0]=200
press = datetime.datetime.now()
delta2 = press - start
nosepokeIDandTime[1] = delta2.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
elif Trig == 15:
nosepokeIDandTime[0]=15
press = datetime.datetime.now()
delta2 = press - start
nosepokeIDandTime[1] = delta2.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
else:
sensorthread.start()
if(not IRsensorque.empty()):
Trig = IRsensorque.get()
time.sleep(.01)
if Trig == 20:
imageque.put(7)
nosepokeIDandTime[0]=20
elif Trig == 30:
# imageque.put()
nosepokeIDandTime[0]=30
press = datetime.datetime.now()
if trialtimerthread.is_alive():
trialtimeque.put(2)
else:
trialtimerthread.start()
trialtimeque.put(2)
delta1 = press - start
nosepokeIDandTime[1] = delta1.total_seconds()
print "Rat_Lever_Other was triggered at", nosepokeIDandTime[1]
StepperControl.SetPosition(1,1.8,0)
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
time.sleep(3)
imageque.put(0)
while(not IRsensorque.empty()):
CLOSE = IRsensorque.get()
if x != trialnum -1:
for i in range(0,(delay-3)*10):
time.sleep(.1)
Trig = 0
if sensorthread.is_alive():
if(not IRsensorque.empty()):
Trig = IRsensorque.get()
if Trig == 150:
nosepokeIDandTime[0]=-150
press = datetime.datetime.now()
delta3 = press - start
nosepokeIDandTime[1] = delta3.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
elif Trig == 200:
nosepokeIDandTime[0]=-200
press = datetime.datetime.now()
delta3 = press - start
nosepokeIDandTime[1] = delta3.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
elif Trig == 20:
nosepokeIDandTime[0]=-20
press = datetime.datetime.now()
delta3 = press - start
nosepokeIDandTime[1] = delta3.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
elif Trig == 15:
nosepokeIDandTime[0]=-15
press = datetime.datetime.now()
delta3 = press - start
nosepokeIDandTime[1] = delta3.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
else:
sensorthread.start()
if(not IRsensorque.empty()):
Trig = IRsensorque.get()
## Stage 22
# Air on other (friend only). Port 200 turns off air.
if stagenum == '22':
trialcount=trialcount+1
trialdisplay = "{0}".format(trialcount)
self.trialcounter.setDigitCount(len(trialdisplay))
self.trialcounter.display(trialdisplay)
StepperControl.SetPosition(1,1.8,-725)
trialtimerthread = threading.Thread(None, self.Trialtime, None, ())
trialtimerthread.start()
imageque.put(6)
move = datetime.datetime.now()
delta = move - start
trialstarttimeandID[0] = 3
trialstarttimeandID[1] = delta.total_seconds()
print >> datafile, str(trialstarttimeandID[0]), str(trialstarttimeandID[1]).rjust(savefilespacing)
Trig = 0
while(not IRsensorque.empty()):
CLOSE = IRsensorque.get()
while Trig != 200 and Trig != 30:
Trig = 0
if sensorthread.is_alive():
if(not IRsensorque.empty()):
Trig = IRsensorque.get()
if Trig == 20:
nosepokeIDandTime[0]=20
press = datetime.datetime.now()
delta2 = press - start
nosepokeIDandTime[1] = delta2.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
elif Trig == 15:
nosepokeIDandTime[0]=15
press = datetime.datetime.now()
delta2 = press - start
nosepokeIDandTime[1] = delta2.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
elif Trig == 150:
nosepokeIDandTime[0]=150
press = datetime.datetime.now()
delta2 = press - start
nosepokeIDandTime[1] = delta2.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
else:
sensorthread.start()
if(not IRsensorque.empty()):
Trig = IRsensorque.get()
time.sleep(.01)
if Trig == 200:
imageque.put(9)
nosepokeIDandTime[0]=200
elif Trig == 30:
# imageque.put(4)
nosepokeIDandTime[0]=30
press = datetime.datetime.now()
if trialtimerthread.is_alive():
trialtimeque.put(2)
else:
trialtimerthread.start()
trialtimeque.put(2)
delta1 = press - start
nosepokeIDandTime[1] = delta1.total_seconds()
print "Rat_Lever_Self was triggered at", nosepokeIDandTime[1]
StepperControl.SetPosition(1,1.8,0)
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
time.sleep(3)
imageque.put(0)
while(not IRsensorque.empty()):
CLOSE = IRsensorque.get()
if x != trialnum -1:
for i in range(0,(delay-3)*10):
time.sleep(.1)
Trig = 0
if sensorthread.is_alive():
if(not IRsensorque.empty()):
Trig = IRsensorque.get()
if Trig == 150:
nosepokeIDandTime[0]=-150
press = datetime.datetime.now()
delta3 = press - start
nosepokeIDandTime[1] = delta3.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
elif Trig == 200:
nosepokeIDandTime[0]=-200
press = datetime.datetime.now()
delta3 = press - start
nosepokeIDandTime[1] = delta3.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
elif Trig == 20:
nosepokeIDandTime[0]=-20
press = datetime.datetime.now()
delta3 = press - start
nosepokeIDandTime[1] = delta3.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
elif Trig == 15:
nosepokeIDandTime[0]=-15
press = datetime.datetime.now()
delta3 = press - start
nosepokeIDandTime[1] = delta3.total_seconds()
print >> datafile, str(nosepokeIDandTime[0]), str(nosepokeIDandTime[1]).rjust(savefilespacing)
else:
sensorthread.start()
if(not IRsensorque.empty()):
Trig = IRsensorque.get()
## Stage 23
# Air psudo-randomly alternates between self (trial id = 1) and friend/other (trial id = 3).
# Ports 15 and 200 turn off for self and port 20 turns of for friend/other.
if stagenum == '23':
if TrialId[x] == 1:
trialcount=trialcount+1
trialdisplay = "{0}".format(trialcount)
self.trialcounter.setDigitCount(len(trialdisplay))
self.trialcounter.display(trialdisplay)
StepperControl.SetPosition(1,1.8,1400)
trialtimerthread = threading.Thread(None, self.Trialtime, None, ())
trialtimerthread.start()
imageque.put(1)