Name		Name	Last commit message	Last commit date
parent directory ..
pipeline.sh		pipeline.sh
pipeline_rnafm.sh		pipeline_rnafm.sh
predict_by_rnafm.py		predict_by_rnafm.py
predict_by_splicebert.py		predict_by_splicebert.py
readme.md		readme.md
spliceator_data.py		spliceator_data.py
train_rnafm_cv.py		train_rnafm_cv.py
train_splicebert_cv.py		train_splicebert_cv.py

readme.md

Finetune SpliceBERT to predict Splice sites in the Spliceator dataset

See ./pipeline.sh.

The complete Spliceator dataset is available at https://git.unistra.fr/nscalzitti/spliceator. [1]

References

[1] Scalzitti,N. et al. (2021) Spliceator: multi-species splice site prediction using convolutional neural networks. BMC Bioinformatics, 22, 561.