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Export feature loadings in anndata2seurat #74

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Zepeng-Mu opened this issue Jun 22, 2023 · 0 comments
Open

Export feature loadings in anndata2seurat #74

Zepeng-Mu opened this issue Jun 22, 2023 · 0 comments

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@Zepeng-Mu
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Hello,
It seems that currently anndata2seurat does not export feature loadings from PCA.

loadings = new("matrix"),

I think this data should be in the anndata and it would be great if this could be exported. In some Seurat analysis like multi-modal integration, it uses this information in ways like rownames(seuratObj@[email protected]). Not having this from anndata means that pca pre-calculated by scanpy cannot be used.

Thanks!

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