Miscellaneous genomics tools and data structures in golang
go get github.com/carbocation/genomisc/hwe
HWE computes Exact or Approximate Hardy-Weinberg P value. Fast computes
the approximate P value, then if it is significant according to your threshold,
it computes the Exact P-value to be certain. This is a pure go implementation
with naive algorithms, which can therefore be slow. It uses big.Int and can
handle extremely large sample sizes (~hundreds of thousands).
go get github.com/carbocation/genomisc/ramcsv
RAMCSV consumes a file handle and a csv.Reader (which exists only to provide your csv parsing settings) and allows you to seek back and forth through a CSV file to any line in the file, without having to actually keep the full file in memory.
go get github.com/carbocation/genomisc/prsparser
PRSParser consumes a variety of formats for polygenic scores.