diff --git a/README.md b/README.md
index 8eb4318..d7eec06 100644
--- a/README.md
+++ b/README.md
@@ -1,6 +1,6 @@
 <p align="center">
   <img src="docs/src/assets/logo.svg" height="150"><br/>
-  <i>A Gene Finder framework for Julia.</i>
+  <i>A Gene Finder Framework for the Julia Programming Language.</i>
 </p>
 
 <div align="center">
diff --git a/docs/Manifest.toml b/docs/Manifest.toml
index a98bfda..f580a1b 100644
--- a/docs/Manifest.toml
+++ b/docs/Manifest.toml
@@ -1,8 +1,8 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.10.3"
+julia_version = "1.11.1"
 manifest_format = "2.0"
-project_hash = "e796693959137d83427b789f5054fa800312cae0"
+project_hash = "a737ae23847074aa3f8c65ffa51f2732c1aeb154"
 
 [[deps.ANSIColoredPrinters]]
 git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c"
@@ -16,31 +16,27 @@ version = "0.4.5"
 
 [[deps.ArgTools]]
 uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
-version = "1.1.1"
+version = "1.1.2"
 
 [[deps.Artifacts]]
 uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
-
-[[deps.Automa]]
-deps = ["PrecompileTools", "TranscodingStreams"]
-git-tree-sha1 = "588e0d680ad1d7201d4c6a804dcb1cd9cba79fbb"
-uuid = "67c07d97-cdcb-5c2c-af73-a7f9c32a568b"
-version = "1.0.3"
+version = "1.11.0"
 
 [[deps.Base64]]
 uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
+version = "1.11.0"
 
 [[deps.BioGenerics]]
 deps = ["TranscodingStreams"]
-git-tree-sha1 = "7bbc085aebc6faa615740b63756e4986c9e85a70"
+git-tree-sha1 = "017562e86afcd2a6a2a9220606a40b54604887c9"
 uuid = "47718e42-2ac5-11e9-14af-e5595289c2ea"
-version = "0.1.4"
+version = "0.1.5"
 
 [[deps.BioMarkovChains]]
 deps = ["BioSequences", "PrecompileTools", "VectorizedKmers"]
-git-tree-sha1 = "c48cc4efe18355a1a19ae627d05bf19df0a57253"
+git-tree-sha1 = "ce12abfef2ee71d10254b8352fcc28b446d3ea7e"
 uuid = "f861b655-cb5f-42ce-b66a-341b542d4f2c"
-version = "0.9.3"
+version = "1.0.0"
 
     [deps.BioMarkovChains.extensions]
     DiscreteMarkovChainsExt = "DiscreteMarkovChains"
@@ -52,9 +48,9 @@ version = "0.9.3"
 
 [[deps.BioSequences]]
 deps = ["BioSymbols", "PrecompileTools", "Random", "Twiddle"]
-git-tree-sha1 = "6fdba8b4279460fef5674e9aa2dac7ef5be361d5"
+git-tree-sha1 = "9c9693d207634f745f9b965b4341b72b3a5e7d53"
 uuid = "7e6ae17a-c86d-528c-b3b9-7f778a29fe59"
-version = "3.1.6"
+version = "3.4.0"
 
 [[deps.BioSymbols]]
 deps = ["PrecompileTools"]
@@ -63,25 +59,45 @@ uuid = "3c28c6f8-a34d-59c4-9654-267d177fcfa9"
 version = "5.1.3"
 
 [[deps.BitFlags]]
-git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b"
+git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d"
 uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35"
-version = "0.1.8"
+version = "0.1.9"
 
 [[deps.CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
-git-tree-sha1 = "59939d8a997469ee05c4b4944560a820f9ba0d73"
+git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759"
 uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
-version = "0.7.4"
+version = "0.7.6"
+
+[[deps.Compat]]
+deps = ["TOML", "UUIDs"]
+git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215"
+uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
+version = "4.16.0"
+
+    [deps.Compat.extensions]
+    CompatLinearAlgebraExt = "LinearAlgebra"
+
+    [deps.Compat.weakdeps]
+    Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
+    LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 
 [[deps.ConcurrentUtilities]]
 deps = ["Serialization", "Sockets"]
-git-tree-sha1 = "6cbbd4d241d7e6579ab354737f4dd95ca43946e1"
+git-tree-sha1 = "ea32b83ca4fefa1768dc84e504cc0a94fb1ab8d1"
 uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
-version = "2.4.1"
+version = "2.4.2"
+
+[[deps.DataStructures]]
+deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
+git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82"
+uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
+version = "0.18.20"
 
 [[deps.Dates]]
 deps = ["Printf"]
 uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
+version = "1.11.0"
 
 [[deps.DocStringExtensions]]
 deps = ["LibGit2"]
@@ -91,9 +107,21 @@ version = "0.9.3"
 
 [[deps.Documenter]]
 deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "CodecZlib", "Dates", "DocStringExtensions", "Downloads", "Git", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "TOML", "Test", "Unicode"]
-git-tree-sha1 = "5461b2a67beb9089980e2f8f25145186b6d34f91"
+git-tree-sha1 = "5a1ee886566f2fa9318df1273d8b778b9d42712d"
 uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
-version = "1.4.1"
+version = "1.7.0"
+
+[[deps.DocumenterVitepress]]
+deps = ["ANSIColoredPrinters", "Base64", "DocStringExtensions", "Documenter", "IOCapture", "Markdown", "NodeJS_20_jll", "REPL"]
+git-tree-sha1 = "aa210b5039870d3ad181877d99fd37618e94d29c"
+uuid = "4710194d-e776-4893-9690-8d956a29c365"
+version = "0.1.3"
+
+    [deps.DocumenterVitepress.extensions]
+    DocumenterVitepressDocumenterCitationsExt = "DocumenterCitations"
+
+    [deps.DocumenterVitepress.weakdeps]
+    DocumenterCitations = "daee34ce-89f3-4625-b898-19384cb65244"
 
 [[deps.Downloads]]
 deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
@@ -112,24 +140,21 @@ git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7"
 uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
 version = "2.6.2+0"
 
-[[deps.FASTX]]
-deps = ["Automa", "BioGenerics", "PrecompileTools", "StringViews", "TranscodingStreams"]
-git-tree-sha1 = "24ce37a228990be0cb69b3a2dbcfb656f32fc679"
-uuid = "c2308a5c-f048-11e8-3e8a-31650f418d12"
-version = "2.1.5"
-weakdeps = ["BioSequences"]
-
-    [deps.FASTX.extensions]
-    BioSequencesExt = "BioSequences"
-
 [[deps.FileWatching]]
 uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
+version = "1.11.0"
 
 [[deps.GeneFinder]]
-deps = ["BioMarkovChains", "BioSequences", "FASTX", "IterTools", "PrecompileTools"]
+deps = ["BioMarkovChains", "BioSequences", "GenomicFeatures", "IterTools", "PrecompileTools"]
 path = ".."
 uuid = "2bc6ee46-2158-4f5a-a720-91cb2d7cee64"
-version = "0.3.0"
+version = "0.6.1"
+
+[[deps.GenomicFeatures]]
+deps = ["BioGenerics", "DataStructures", "IntervalTrees"]
+git-tree-sha1 = "720844f71f118dd2ab4898a89b2b4feca7730d81"
+uuid = "899a7d2d-5c61-547b-bef9-6698a8d05446"
+version = "3.0.0"
 
 [[deps.Git]]
 deps = ["Git_jll"]
@@ -139,25 +164,31 @@ version = "1.3.1"
 
 [[deps.Git_jll]]
 deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"]
-git-tree-sha1 = "d18fb8a1f3609361ebda9bf029b60fd0f120c809"
+git-tree-sha1 = "ea372033d09e4552a04fd38361cd019f9003f4f4"
 uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb"
-version = "2.44.0+2"
+version = "2.46.2+0"
 
 [[deps.HTTP]]
 deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
-git-tree-sha1 = "d1d712be3164d61d1fb98e7ce9bcbc6cc06b45ed"
+git-tree-sha1 = "bc3f416a965ae61968c20d0ad867556367f2817d"
 uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
-version = "1.10.8"
+version = "1.10.9"
 
 [[deps.IOCapture]]
 deps = ["Logging", "Random"]
-git-tree-sha1 = "8b72179abc660bfab5e28472e019392b97d0985c"
+git-tree-sha1 = "b6d6bfdd7ce25b0f9b2f6b3dd56b2673a66c8770"
 uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89"
-version = "0.2.4"
+version = "0.2.5"
 
 [[deps.InteractiveUtils]]
 deps = ["Markdown"]
 uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
+version = "1.11.0"
+
+[[deps.IntervalTrees]]
+git-tree-sha1 = "dc3b97bb5c9cb7c437f74027309f2c2f09a82aaf"
+uuid = "524e6230-43b7-53ae-be76-1e9e4d08d11b"
+version = "1.1.0"
 
 [[deps.IterTools]]
 git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023"
@@ -166,9 +197,9 @@ version = "1.10.0"
 
 [[deps.JLLWrappers]]
 deps = ["Artifacts", "Preferences"]
-git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca"
+git-tree-sha1 = "be3dc50a92e5a386872a493a10050136d4703f9b"
 uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
-version = "1.5.0"
+version = "1.6.1"
 
 [[deps.JSON]]
 deps = ["Dates", "Mmap", "Parsers", "Unicode"]
@@ -189,16 +220,17 @@ version = "0.6.4"
 [[deps.LibCURL_jll]]
 deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
 uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
-version = "8.4.0+0"
+version = "8.6.0+0"
 
 [[deps.LibGit2]]
 deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"]
 uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
+version = "1.11.0"
 
 [[deps.LibGit2_jll]]
 deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"]
 uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5"
-version = "1.6.4+0"
+version = "1.7.2+0"
 
 [[deps.LibSSH2_jll]]
 deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
@@ -207,27 +239,29 @@ version = "1.11.0+1"
 
 [[deps.Libdl]]
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
+version = "1.11.0"
 
 [[deps.Libiconv_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175"
+git-tree-sha1 = "61dfdba58e585066d8bce214c5a51eaa0539f269"
 uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
-version = "1.17.0+0"
+version = "1.17.0+1"
 
 [[deps.LiveServer]]
-deps = ["HTTP", "LoggingExtras", "MIMEs", "Pkg", "Sockets", "Test"]
-git-tree-sha1 = "1e46b873b8ef176e23ee43f96e72cd45c20bafb4"
+deps = ["HTTP", "LoggingExtras", "MIMEs", "Sockets", "Test"]
+git-tree-sha1 = "564a436267fb1fc768f815dad64c4386c46623f8"
 uuid = "16fef848-5104-11e9-1b77-fb7a48bbb589"
-version = "1.3.1"
+version = "1.4.0"
 
 [[deps.Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
+version = "1.11.0"
 
 [[deps.LoggingExtras]]
 deps = ["Dates", "Logging"]
-git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075"
+git-tree-sha1 = "f02b56007b064fbfddb4c9cd60161b6dd0f40df3"
 uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
-version = "1.0.3"
+version = "1.1.0"
 
 [[deps.MIMEs]]
 git-tree-sha1 = "65f28ad4b594aebe22157d6fac869786a255b7eb"
@@ -237,6 +271,7 @@ version = "0.1.4"
 [[deps.Markdown]]
 deps = ["Base64"]
 uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
+version = "1.11.0"
 
 [[deps.MarkdownAST]]
 deps = ["AbstractTrees", "Markdown"]
@@ -253,19 +288,26 @@ version = "1.1.9"
 [[deps.MbedTLS_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
-version = "2.28.2+1"
+version = "2.28.6+0"
 
 [[deps.Mmap]]
 uuid = "a63ad114-7e13-5084-954f-fe012c677804"
+version = "1.11.0"
 
 [[deps.MozillaCACerts_jll]]
 uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
-version = "2023.1.10"
+version = "2023.12.12"
 
 [[deps.NetworkOptions]]
 uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
 version = "1.2.0"
 
+[[deps.NodeJS_20_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "0b1b4a83773cfdefa5d9dc0322e4c0624ce88b5b"
+uuid = "c7aee132-11e1-519c-8219-0a43005e73c2"
+version = "20.12.2+0"
+
 [[deps.OpenSSL]]
 deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"]
 git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4"
@@ -274,9 +316,14 @@ version = "1.4.3"
 
 [[deps.OpenSSL_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046"
+git-tree-sha1 = "7493f61f55a6cce7325f197443aa80d32554ba10"
 uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
-version = "3.0.13+1"
+version = "3.0.15+1"
+
+[[deps.OrderedCollections]]
+git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5"
+uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
+version = "1.6.3"
 
 [[deps.PCRE2_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -290,9 +337,13 @@ uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
 version = "2.8.1"
 
 [[deps.Pkg]]
-deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
+deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"]
 uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
-version = "1.10.0"
+version = "1.11.0"
+weakdeps = ["REPL"]
+
+    [deps.Pkg.extensions]
+    REPLExt = "REPL"
 
 [[deps.PrecompileTools]]
 deps = ["Preferences"]
@@ -309,14 +360,17 @@ version = "1.4.3"
 [[deps.Printf]]
 deps = ["Unicode"]
 uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
+version = "1.11.0"
 
 [[deps.REPL]]
-deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
+deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"]
 uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
+version = "1.11.0"
 
 [[deps.Random]]
 deps = ["SHA"]
 uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+version = "1.11.0"
 
 [[deps.RegistryInstances]]
 deps = ["LazilyInitializedFields", "Pkg", "TOML", "Tar"]
@@ -330,24 +384,25 @@ version = "0.7.0"
 
 [[deps.Serialization]]
 uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
+version = "1.11.0"
 
 [[deps.SimpleBufferStream]]
-git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1"
+git-tree-sha1 = "f305871d2f381d21527c770d4788c06c097c9bc1"
 uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7"
-version = "1.1.0"
+version = "1.2.0"
 
 [[deps.Sockets]]
 uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
+version = "1.11.0"
 
 [[deps.StaticArraysCore]]
-git-tree-sha1 = "36b3d696ce6366023a0ea192b4cd442268995a0d"
+git-tree-sha1 = "192954ef1208c7019899fbf8049e717f92959682"
 uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
-version = "1.4.2"
+version = "1.4.3"
 
-[[deps.StringViews]]
-git-tree-sha1 = "f7b06677eae2571c888fd686ba88047d8738b0e3"
-uuid = "354b36f9-a18e-4713-926e-db85100087ba"
-version = "1.3.3"
+[[deps.StyledStrings]]
+uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b"
+version = "1.11.0"
 
 [[deps.TOML]]
 deps = ["Dates"]
@@ -362,15 +417,12 @@ version = "1.10.0"
 [[deps.Test]]
 deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
 uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+version = "1.11.0"
 
 [[deps.TranscodingStreams]]
-git-tree-sha1 = "5d54d076465da49d6746c647022f3b3674e64156"
+git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.10.8"
-weakdeps = ["Random", "Test"]
-
-    [deps.TranscodingStreams.extensions]
-    TestExt = ["Test", "Random"]
+version = "0.11.3"
 
 [[deps.Twiddle]]
 git-tree-sha1 = "29509c4862bfb5da9e76eb6937125ab93986270a"
@@ -385,9 +437,11 @@ version = "1.5.1"
 [[deps.UUIDs]]
 deps = ["Random", "SHA"]
 uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
+version = "1.11.0"
 
 [[deps.Unicode]]
 uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
+version = "1.11.0"
 
 [[deps.VectorizedKmers]]
 deps = ["StaticArraysCore"]
@@ -407,7 +461,7 @@ version = "1.2.13+1"
 [[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
-version = "1.52.0+1"
+version = "1.59.0+0"
 
 [[deps.p7zip_jll]]
 deps = ["Artifacts", "Libdl"]
diff --git a/docs/src/assets/logo.drawio.svg b/docs/src/assets/logo.drawio.svg
new file mode 100644
index 0000000..7315d69
--- /dev/null
+++ b/docs/src/assets/logo.drawio.svg
@@ -0,0 +1,834 @@
+<?xml version="1.0" encoding="UTF-8" standalone="no"?>
+<svg
+   viewBox="0 0 150.00001 180.2642"
+   version="1.1"
+   id="svg177"
+   sodipodi:docname="logo.svg"
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