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Methods in Genomics

How this works:

  • inside the Topics folder are organized the topics we are going to touch, if you start with a new topic checkout the GSEA example (no need to do tutorial & presenation & bibliography, this is just an example).
  • bellow are listed the main topics we would like to cover (suggestions welcome)
  • in the issues section of this page are listed again the topics (each issue is a topic), grouped by fields (as labels). This issues section could be great to quickly see who knows what. If you know about a given topic please assign yourself to the corresponding issue.
    • Github trick: if you add files to the repo related to a given topic (e.g. GSEA), you can search for the issue number in "issues" and add this number to your commit message (commit -am "added presentation to GSEA related to #1"), this will automatically link your commit, and thus your changes, to the corresponding issue (more info)

that's it!

Schedule

dates Speaker Steward 1 Steward 2 Topic
2021-01-20 Francois Serra Hi-C - TADbit
2021-02-03 Beatriz Urda Alba Lepore Kathleen Imbach RNA-seq
2021-02-17 Jon Sánchez Valle Mónica Cabrera Núria Olvera GSEA
2021-03-03 Carlos Madariaga François Serra Paula López Chromatin loop callers
2021-03-17 Hira Shahid Jon Sánchez Valle Laureano Tomás GWAS
2021-04-14 Kathleen Imbach Jon Sánchez Valle Victoria Isabel Ruiz Serra ATAC-seq
2021-04-28 Laureano Tomás Beatriz Urda Hira Shahid CUT & RUN
2021-05-12 María Morales Martínez Núria Olvera Victoria Isabel Ruiz Serra DamID and LADs
2021-05-26 Mónica Cabrera François Serra Paula López (Promoter) Capture Hi-C
2021-06-09 Núria Olvera Jon Sánchez Valle Beatriz Urda DNA Methylation (example: Aging clock)
2021-07-07 Victoria Isabel Ruiz Serra Hira Shahid Kathleen Imbach PDBmapper (example with COVID)

Note: feel free to edit and add (and reserve) the topic of your talk