From 6e75f1efdb5bf7442584c00e2feaf40fb1dfb505 Mon Sep 17 00:00:00 2001
From: Chris Norman <cnorman@broadinstitute.org>
Date: Tue, 21 Jul 2020 14:40:44 -0400
Subject: [PATCH] Re-enable IndexFeatureFile test for uncompressed BCF. (#6716)

---
 .../hellbender/tools/IndexFeatureFileIntegrationTest.java    | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/src/test/java/org/broadinstitute/hellbender/tools/IndexFeatureFileIntegrationTest.java b/src/test/java/org/broadinstitute/hellbender/tools/IndexFeatureFileIntegrationTest.java
index 4f78447c96b..4249c24f1a9 100644
--- a/src/test/java/org/broadinstitute/hellbender/tools/IndexFeatureFileIntegrationTest.java
+++ b/src/test/java/org/broadinstitute/hellbender/tools/IndexFeatureFileIntegrationTest.java
@@ -239,8 +239,7 @@ public void testBCFIndex() {
         checkIndex(index, Arrays.asList("1"));
     }
 
-    // test disabled until https://github.com/samtools/htsjdk/issues/1323 is resolved
-    @Test(enabled = false)
+    @Test(expectedExceptions = UserException.CouldNotIndexFile.class)
     public void testUncompressedBCF2_2Index() {
         final File ORIG_FILE = getTestFile("test_variants_for_index.BCF22uncompressed.bcf");
         final File outName = createTempFile("test_variants_for_index.BCF22uncompressed.bcf", ".idx");
@@ -249,7 +248,7 @@ public void testUncompressedBCF2_2Index() {
                 "-I", ORIG_FILE.getAbsolutePath(),
                 "-O", outName.getAbsolutePath()
         };
-        final Object res = this.runCommandLine(args);
+        this.runCommandLine(args);
     }
 
     @Test(expectedExceptions = UserException.NoSuitableCodecs.class)