--2023-02-01 00:26:26-- https://raw.githubusercontent.com/bids-apps/maintenance-tools/main/circleci/build_docker.sh Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.110.133, 185.199.108.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 674 [text/plain] Saving to: ‘build_docker.sh’ build_docker.sh 0%[ ] 0 --.-KB/s build_docker.sh 100%[===================>] 674 --.-KB/s in 0s 2023-02-01 00:26:26 (83.5 MB/s) - ‘build_docker.sh’ saved [674/674] + user_name=bids ++ echo MAGeTbrain ++ tr '[:upper:]' '[:lower:]' + repo_name=magetbrain + [[ -e /home/circleci/docker/image.tar ]] + git describe --tags --always + docker build -t bids/magetbrain . Sending build context to Docker daemon 144.4kB Step 1/21 : FROM gdevenyi/magetbrain-bids-ants:82dcdd647211004f3220e4073ea4daf06fdf89f9 82dcdd647211004f3220e4073ea4daf06fdf89f9: Pulling from gdevenyi/magetbrain-bids-ants c64513b74145: Pulling fs layer 01b8b12bad90: Pulling fs layer c5d85cf7a05f: Pulling fs layer b6b268720157: Pulling fs layer e12192999ff1: Pulling fs layer ba5a272159c3: Pulling fs layer b6b268720157: Waiting e12192999ff1: Waiting ba5a272159c3: Waiting c5d85cf7a05f: Downloading 468B/468B c5d85cf7a05f: Verifying Checksum c5d85cf7a05f: Download complete 01b8b12bad90: Downloading 847B/847B 01b8b12bad90: Verifying Checksum 01b8b12bad90: Download complete c64513b74145: Downloading 320.2kB/31.66MB b6b268720157: Downloading 849B/849B b6b268720157: Verifying Checksum b6b268720157: Download complete e12192999ff1: Downloading 163B/163B e12192999ff1: Verifying Checksum e12192999ff1: Download complete c64513b74145: Downloading 3.585MB/31.66MB ba5a272159c3: Downloading 538.1kB/97.18MB c64513b74145: Downloading 21.32MB/31.66MB ba5a272159c3: Downloading 10.79MB/97.18MB c64513b74145: Verifying Checksum c64513b74145: Download complete c64513b74145: Extracting 327.7kB/31.66MB ba5a272159c3: Downloading 21.58MB/97.18MB c64513b74145: Extracting 2.949MB/31.66MB ba5a272159c3: Downloading 28.59MB/97.18MB c64513b74145: Extracting 7.537MB/31.66MB c64513b74145: Extracting 12.45MB/31.66MB ba5a272159c3: Downloading 33.92MB/97.18MB c64513b74145: Extracting 16.38MB/31.66MB ba5a272159c3: Downloading 46.73MB/97.18MB c64513b74145: Extracting 18.35MB/31.66MB ba5a272159c3: Downloading 54.82MB/97.18MB c64513b74145: Extracting 21.63MB/31.66MB ba5a272159c3: Downloading 64.01MB/97.18MB c64513b74145: Extracting 24.58MB/31.66MB c64513b74145: Extracting 27.53MB/31.66MB ba5a272159c3: Downloading 67.22MB/97.18MB c64513b74145: Extracting 29.16MB/31.66MB ba5a272159c3: Downloading 75.78MB/97.18MB ba5a272159c3: Downloading 89.78MB/97.18MB c64513b74145: Extracting 30.8MB/31.66MB ba5a272159c3: Verifying Checksum ba5a272159c3: Download complete c64513b74145: Extracting 31.66MB/31.66MB c64513b74145: Pull complete 01b8b12bad90: Extracting 847B/847B 01b8b12bad90: Extracting 847B/847B 01b8b12bad90: Pull complete c5d85cf7a05f: Extracting 468B/468B c5d85cf7a05f: Extracting 468B/468B c5d85cf7a05f: Pull complete b6b268720157: Extracting 849B/849B b6b268720157: Extracting 849B/849B b6b268720157: Pull complete e12192999ff1: Extracting 163B/163B e12192999ff1: Extracting 163B/163B e12192999ff1: Pull complete ba5a272159c3: Extracting 557.1kB/97.18MB ba5a272159c3: Extracting 6.128MB/97.18MB ba5a272159c3: Extracting 11.14MB/97.18MB ba5a272159c3: Extracting 16.15MB/97.18MB ba5a272159c3: Extracting 21.73MB/97.18MB ba5a272159c3: Extracting 27.3MB/97.18MB ba5a272159c3: Extracting 32.87MB/97.18MB ba5a272159c3: Extracting 38.44MB/97.18MB ba5a272159c3: Extracting 43.45MB/97.18MB ba5a272159c3: Extracting 49.02MB/97.18MB ba5a272159c3: Extracting 54.59MB/97.18MB ba5a272159c3: Extracting 59.6MB/97.18MB ba5a272159c3: Extracting 64.62MB/97.18MB ba5a272159c3: Extracting 70.19MB/97.18MB ba5a272159c3: Extracting 74.65MB/97.18MB ba5a272159c3: Extracting 79.1MB/97.18MB ba5a272159c3: Extracting 84.67MB/97.18MB ba5a272159c3: Extracting 89.13MB/97.18MB ba5a272159c3: Extracting 94.7MB/97.18MB ba5a272159c3: Extracting 97.18MB/97.18MB ba5a272159c3: Pull complete Digest: sha256:5c64ffd49bcc62669bd91af6c214046616cfc7a870b6499ac85eabafbdbfe95f Status: Downloaded newer image for gdevenyi/magetbrain-bids-ants:82dcdd647211004f3220e4073ea4daf06fdf89f9 ---> 9e288c0be12d Step 2/21 : RUN apt-get update && apt-get install --auto-remove --no-install-recommends -y parallel git curl gzip bzip2 gnupg2 unzip coreutils ca-certificates && rm -rf /var/lib/apt/lists/* ---> Running in 9ea30e09a310 Get:1 http://archive.ubuntu.com/ubuntu bionic InRelease [242 kB] Get:2 http://archive.ubuntu.com/ubuntu bionic-updates InRelease [88.7 kB] Get:3 http://archive.ubuntu.com/ubuntu bionic-backports InRelease [83.3 kB] Get:4 http://security.ubuntu.com/ubuntu bionic-security InRelease [88.7 kB] Get:5 http://archive.ubuntu.com/ubuntu bionic/universe Sources [11.5 MB] Get:6 http://archive.ubuntu.com/ubuntu bionic/universe amd64 Packages [11.3 MB] Get:7 http://archive.ubuntu.com/ubuntu bionic/restricted amd64 Packages [13.5 kB] Get:8 http://archive.ubuntu.com/ubuntu bionic/main amd64 Packages [1344 kB] Get:9 http://security.ubuntu.com/ubuntu bionic-security/universe Sources [385 kB] Get:10 http://archive.ubuntu.com/ubuntu bionic/multiverse amd64 Packages [186 kB] Get:11 http://archive.ubuntu.com/ubuntu bionic-updates/universe Sources [618 kB] Get:12 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 Packages [3581 kB] Get:13 http://archive.ubuntu.com/ubuntu bionic-updates/restricted amd64 Packages [1430 kB] Get:14 http://archive.ubuntu.com/ubuntu bionic-updates/universe amd64 Packages [2353 kB] Get:15 http://archive.ubuntu.com/ubuntu bionic-updates/multiverse amd64 Packages [30.8 kB] Get:16 http://archive.ubuntu.com/ubuntu bionic-backports/universe amd64 Packages [20.5 kB] Get:17 http://archive.ubuntu.com/ubuntu bionic-backports/main amd64 Packages [64.0 kB] Get:18 http://security.ubuntu.com/ubuntu bionic-security/multiverse amd64 Packages [22.9 kB] Get:19 http://security.ubuntu.com/ubuntu bionic-security/main amd64 Packages [3161 kB] Get:20 http://security.ubuntu.com/ubuntu bionic-security/universe amd64 Packages [1578 kB] Get:21 http://security.ubuntu.com/ubuntu bionic-security/restricted amd64 Packages [1389 kB] Fetched 39.5 MB in 3s (14.7 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... coreutils is already the newest version (8.28-1ubuntu1). The following additional packages will be installed: dirmngr git-man gnupg gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm gpgv libasn1-8-heimdal libassuan0 libbz2-1.0 libcurl3-gnutls libcurl4 liberror-perl libexpat1 libgdbm-compat4 libgdbm5 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libksba8 libldap-2.4-2 libldap-common libnghttp2-14 libnpth0 libperl5.26 libpsl5 libreadline7 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsensors4 libsqlite3-0 libssl1.1 libwind0-heimdal openssl perl perl-base perl-modules-5.26 pinentry-curses readline-common sysstat ucf Suggested packages: bzip2-doc dbus-user-session libpam-systemd pinentry-gnome3 tor gettext-base git-daemon-run | git-daemon-sysvinit git-doc git-el git-email git-gui gitk gitweb git-cvs git-mediawiki git-svn parcimonie xloadimage scdaemon less gdbm-l10n krb5-doc krb5-user lm-sensors perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl make pinentry-doc readline-doc isag zip Recommended packages: patch less ssh-client krb5-locales publicsuffix libsasl2-modules netbase cron | cron-daemon The following packages will be REMOVED: gcc-7-base The following NEW packages will be installed: ca-certificates curl dirmngr git git-man gnupg gnupg-l10n gnupg-utils gnupg2 gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm libasn1-8-heimdal libassuan0 libcurl3-gnutls libcurl4 liberror-perl libexpat1 libgdbm-compat4 libgdbm5 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libksba8 libldap-2.4-2 libldap-common libnghttp2-14 libnpth0 libperl5.26 libpsl5 libreadline7 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsensors4 libsqlite3-0 libssl1.1 libwind0-heimdal openssl parallel perl perl-modules-5.26 pinentry-curses readline-common sysstat ucf unzip The following packages will be upgraded: bzip2 gpgv gzip libbz2-1.0 perl-base 5 upgraded, 59 newly installed, 1 to remove and 56 not upgraded. Need to get 21.1 MB of archives. After this operation, 100 MB of additional disk space will be used. Get:1 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 gzip amd64 1.6-5ubuntu1.2 [90.3 kB] Get:2 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 perl-base amd64 5.26.1-6ubuntu0.6 [1393 kB] Get:3 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 perl-modules-5.26 all 5.26.1-6ubuntu0.6 [2764 kB] Get:4 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 bzip2 amd64 1.0.6-8.1ubuntu0.2 [33.9 kB] Get:5 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libbz2-1.0 amd64 1.0.6-8.1ubuntu0.2 [31.2 kB] Get:6 http://archive.ubuntu.com/ubuntu bionic/main amd64 libgdbm5 amd64 1.14.1-6 [26.0 kB] Get:7 http://archive.ubuntu.com/ubuntu bionic/main amd64 libgdbm-compat4 amd64 1.14.1-6 [6084 B] Get:8 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libperl5.26 amd64 5.26.1-6ubuntu0.6 [3556 kB] Get:9 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 perl amd64 5.26.1-6ubuntu0.6 [201 kB] Get:10 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 gpgv amd64 2.2.4-1ubuntu1.6 [198 kB] Get:11 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libssl1.1 amd64 1.1.1-1ubuntu2.1~18.04.20 [1302 kB] Get:12 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 openssl amd64 1.1.1-1ubuntu2.1~18.04.20 [614 kB] Get:13 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 ca-certificates all 20211016ubuntu0.18.04.1 [140 kB] Get:14 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libexpat1 amd64 2.2.5-3ubuntu0.9 [82.8 kB] Get:15 http://archive.ubuntu.com/ubuntu bionic/main amd64 readline-common all 7.0-3 [52.9 kB] Get:16 http://archive.ubuntu.com/ubuntu bionic/main amd64 libreadline7 amd64 7.0-3 [124 kB] Get:17 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libsqlite3-0 amd64 3.22.0-1ubuntu0.7 [499 kB] Get:18 http://archive.ubuntu.com/ubuntu bionic/main amd64 ucf all 3.0038 [50.5 kB] Get:19 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libkrb5support0 amd64 1.16-2ubuntu0.3 [30.9 kB] Get:20 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libk5crypto3 amd64 1.16-2ubuntu0.3 [85.5 kB] Get:21 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libkeyutils1 amd64 1.5.9-9.2ubuntu2.1 [8764 B] Get:22 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libkrb5-3 amd64 1.16-2ubuntu0.3 [278 kB] Get:23 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libgssapi-krb5-2 amd64 1.16-2ubuntu0.3 [122 kB] Get:24 http://archive.ubuntu.com/ubuntu bionic/main amd64 libpsl5 amd64 0.19.1-5build1 [41.8 kB] Get:25 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libroken18-heimdal amd64 7.5.0+dfsg-1ubuntu0.3 [42.3 kB] Get:26 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libasn1-8-heimdal amd64 7.5.0+dfsg-1ubuntu0.3 [175 kB] Get:27 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libheimbase1-heimdal amd64 7.5.0+dfsg-1ubuntu0.3 [30.3 kB] Get:28 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libhcrypto4-heimdal amd64 7.5.0+dfsg-1ubuntu0.3 [86.1 kB] Get:29 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libwind0-heimdal amd64 7.5.0+dfsg-1ubuntu0.3 [47.8 kB] Get:30 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libhx509-5-heimdal amd64 7.5.0+dfsg-1ubuntu0.3 [107 kB] Get:31 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libkrb5-26-heimdal amd64 7.5.0+dfsg-1ubuntu0.3 [207 kB] Get:32 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libheimntlm0-heimdal amd64 7.5.0+dfsg-1ubuntu0.3 [14.8 kB] Get:33 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libgssapi3-heimdal amd64 7.5.0+dfsg-1ubuntu0.3 [96.6 kB] Get:34 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3ubuntu2.4 [15.0 kB] Get:35 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3ubuntu2.4 [49.2 kB] Get:36 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libldap-common all 2.4.45+dfsg-1ubuntu1.11 [15.8 kB] Get:37 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libldap-2.4-2 amd64 2.4.45+dfsg-1ubuntu1.11 [154 kB] Get:38 http://archive.ubuntu.com/ubuntu bionic/main amd64 libnghttp2-14 amd64 1.30.0-1ubuntu1 [77.8 kB] Get:39 http://archive.ubuntu.com/ubuntu bionic/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1 [54.2 kB] Get:40 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libcurl4 amd64 7.58.0-2ubuntu3.22 [220 kB] Get:41 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 curl amd64 7.58.0-2ubuntu3.22 [159 kB] Get:42 http://archive.ubuntu.com/ubuntu bionic/main amd64 libassuan0 amd64 2.5.1-2 [35.0 kB] Get:43 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 gpgconf amd64 2.2.4-1ubuntu1.6 [124 kB] Get:44 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libksba8 amd64 1.3.5-2ubuntu0.18.04.2 [94.6 kB] Get:45 http://archive.ubuntu.com/ubuntu bionic/main amd64 libnpth0 amd64 1.5-3 [7668 B] Get:46 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 dirmngr amd64 2.2.4-1ubuntu1.6 [317 kB] Get:47 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libcurl3-gnutls amd64 7.58.0-2ubuntu3.22 [218 kB] Get:48 http://archive.ubuntu.com/ubuntu bionic/main amd64 liberror-perl all 0.17025-1 [22.8 kB] Get:49 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 git-man all 1:2.17.1-1ubuntu0.15 [804 kB] Get:50 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 git amd64 1:2.17.1-1ubuntu0.15 [3925 kB] Get:51 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 gnupg-l10n all 2.2.4-1ubuntu1.6 [50.1 kB] Get:52 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 gnupg-utils amd64 2.2.4-1ubuntu1.6 [128 kB] Get:53 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 gpg amd64 2.2.4-1ubuntu1.6 [468 kB] Get:54 http://archive.ubuntu.com/ubuntu bionic/main amd64 pinentry-curses amd64 1.1.0-1 [35.8 kB] Get:55 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 gpg-agent amd64 2.2.4-1ubuntu1.6 [227 kB] Get:56 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 gpg-wks-client amd64 2.2.4-1ubuntu1.6 [91.8 kB] Get:57 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 gpg-wks-server amd64 2.2.4-1ubuntu1.6 [85.0 kB] Get:58 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 gpgsm amd64 2.2.4-1ubuntu1.6 [215 kB] Get:59 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 gnupg amd64 2.2.4-1ubuntu1.6 [249 kB] Get:60 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libsensors4 amd64 1:3.4.0-4ubuntu0.1 [28.3 kB] Get:61 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 sysstat amd64 11.6.1-1ubuntu0.2 [295 kB] Get:62 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 unzip amd64 6.0-21ubuntu1.2 [168 kB] Get:63 http://archive.ubuntu.com/ubuntu bionic-updates/universe amd64 gnupg2 all 2.2.4-1ubuntu1.6 [5300 B] Get:64 http://archive.ubuntu.com/ubuntu bionic/universe amd64 parallel all 20161222-1 [260 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.1 MB in 7s (3191 kB/s) (Reading database ... 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Setting up libbz2-1.0:amd64 (1.0.6-8.1ubuntu0.2) ... Selecting previously unselected package libgdbm5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5415 files and directories currently installed.) Preparing to unpack .../libgdbm5_1.14.1-6_amd64.deb ... Unpacking libgdbm5:amd64 (1.14.1-6) ... Selecting previously unselected package libgdbm-compat4:amd64. Preparing to unpack .../libgdbm-compat4_1.14.1-6_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.14.1-6) ... Selecting previously unselected package libperl5.26:amd64. Preparing to unpack .../libperl5.26_5.26.1-6ubuntu0.6_amd64.deb ... Unpacking libperl5.26:amd64 (5.26.1-6ubuntu0.6) ... Selecting previously unselected package perl. Preparing to unpack .../perl_5.26.1-6ubuntu0.6_amd64.deb ... Unpacking perl (5.26.1-6ubuntu0.6) ... Preparing to unpack .../gpgv_2.2.4-1ubuntu1.6_amd64.deb ... Unpacking gpgv (2.2.4-1ubuntu1.6) over (2.2.4-1ubuntu1.1) ... Setting up gpgv (2.2.4-1ubuntu1.6) ... Selecting previously unselected package libssl1.1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 5984 files and directories currently installed.) Preparing to unpack .../00-libssl1.1_1.1.1-1ubuntu2.1~18.04.20_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1-1ubuntu2.1~18.04.20) ... Selecting previously unselected package openssl. Preparing to unpack .../01-openssl_1.1.1-1ubuntu2.1~18.04.20_amd64.deb ... Unpacking openssl (1.1.1-1ubuntu2.1~18.04.20) ... Selecting previously unselected package ca-certificates. 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Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../08-libkrb5support0_1.16-2ubuntu0.3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.16-2ubuntu0.3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../09-libk5crypto3_1.16-2ubuntu0.3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.16-2ubuntu0.3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../10-libkeyutils1_1.5.9-9.2ubuntu2.1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.9-9.2ubuntu2.1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../11-libkrb5-3_1.16-2ubuntu0.3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.16-2ubuntu0.3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../12-libgssapi-krb5-2_1.16-2ubuntu0.3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.16-2ubuntu0.3) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../13-libpsl5_0.19.1-5build1_amd64.deb ... Unpacking libpsl5:amd64 (0.19.1-5build1) ... Selecting previously unselected package libroken18-heimdal:amd64. Preparing to unpack .../14-libroken18-heimdal_7.5.0+dfsg-1ubuntu0.3_amd64.deb ... Unpacking libroken18-heimdal:amd64 (7.5.0+dfsg-1ubuntu0.3) ... Selecting previously unselected package libasn1-8-heimdal:amd64. Preparing to unpack .../15-libasn1-8-heimdal_7.5.0+dfsg-1ubuntu0.3_amd64.deb ... Unpacking libasn1-8-heimdal:amd64 (7.5.0+dfsg-1ubuntu0.3) ... Selecting previously unselected package libheimbase1-heimdal:amd64. Preparing to unpack .../16-libheimbase1-heimdal_7.5.0+dfsg-1ubuntu0.3_amd64.deb ... Unpacking libheimbase1-heimdal:amd64 (7.5.0+dfsg-1ubuntu0.3) ... Selecting previously unselected package libhcrypto4-heimdal:amd64. Preparing to unpack .../17-libhcrypto4-heimdal_7.5.0+dfsg-1ubuntu0.3_amd64.deb ... Unpacking libhcrypto4-heimdal:amd64 (7.5.0+dfsg-1ubuntu0.3) ... Selecting previously unselected package libwind0-heimdal:amd64. Preparing to unpack .../18-libwind0-heimdal_7.5.0+dfsg-1ubuntu0.3_amd64.deb ... Unpacking libwind0-heimdal:amd64 (7.5.0+dfsg-1ubuntu0.3) ... Selecting previously unselected package libhx509-5-heimdal:amd64. Preparing to unpack .../19-libhx509-5-heimdal_7.5.0+dfsg-1ubuntu0.3_amd64.deb ... Unpacking libhx509-5-heimdal:amd64 (7.5.0+dfsg-1ubuntu0.3) ... Selecting previously unselected package libkrb5-26-heimdal:amd64. Preparing to unpack .../20-libkrb5-26-heimdal_7.5.0+dfsg-1ubuntu0.3_amd64.deb ... Unpacking libkrb5-26-heimdal:amd64 (7.5.0+dfsg-1ubuntu0.3) ... Selecting previously unselected package libheimntlm0-heimdal:amd64. Preparing to unpack .../21-libheimntlm0-heimdal_7.5.0+dfsg-1ubuntu0.3_amd64.deb ... Unpacking libheimntlm0-heimdal:amd64 (7.5.0+dfsg-1ubuntu0.3) ... Selecting previously unselected package libgssapi3-heimdal:amd64. Preparing to unpack .../22-libgssapi3-heimdal_7.5.0+dfsg-1ubuntu0.3_amd64.deb ... Unpacking libgssapi3-heimdal:amd64 (7.5.0+dfsg-1ubuntu0.3) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../23-libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2.4_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3ubuntu2.4) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../24-libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2.4_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3ubuntu2.4) ... Selecting previously unselected package libldap-common. Preparing to unpack .../25-libldap-common_2.4.45+dfsg-1ubuntu1.11_all.deb ... Unpacking libldap-common (2.4.45+dfsg-1ubuntu1.11) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../26-libldap-2.4-2_2.4.45+dfsg-1ubuntu1.11_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.45+dfsg-1ubuntu1.11) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../27-libnghttp2-14_1.30.0-1ubuntu1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.30.0-1ubuntu1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../28-librtmp1_2.4+20151223.gitfa8646d.1-1_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../29-libcurl4_7.58.0-2ubuntu3.22_amd64.deb ... Unpacking libcurl4:amd64 (7.58.0-2ubuntu3.22) ... Selecting previously unselected package curl. Preparing to unpack .../30-curl_7.58.0-2ubuntu3.22_amd64.deb ... Unpacking curl (7.58.0-2ubuntu3.22) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../31-libassuan0_2.5.1-2_amd64.deb ... Unpacking libassuan0:amd64 (2.5.1-2) ... Selecting previously unselected package gpgconf. Preparing to unpack .../32-gpgconf_2.2.4-1ubuntu1.6_amd64.deb ... Unpacking gpgconf (2.2.4-1ubuntu1.6) ... Selecting previously unselected package libksba8:amd64. Preparing to unpack .../33-libksba8_1.3.5-2ubuntu0.18.04.2_amd64.deb ... Unpacking libksba8:amd64 (1.3.5-2ubuntu0.18.04.2) ... Selecting previously unselected package libnpth0:amd64. Preparing to unpack .../34-libnpth0_1.5-3_amd64.deb ... Unpacking libnpth0:amd64 (1.5-3) ... Selecting previously unselected package dirmngr. Preparing to unpack .../35-dirmngr_2.2.4-1ubuntu1.6_amd64.deb ... Unpacking dirmngr (2.2.4-1ubuntu1.6) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../36-libcurl3-gnutls_7.58.0-2ubuntu3.22_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.58.0-2ubuntu3.22) ... Selecting previously unselected package liberror-perl. Preparing to unpack .../37-liberror-perl_0.17025-1_all.deb ... Unpacking liberror-perl (0.17025-1) ... Selecting previously unselected package git-man. Preparing to unpack .../38-git-man_1%3a2.17.1-1ubuntu0.15_all.deb ... Unpacking git-man (1:2.17.1-1ubuntu0.15) ... Selecting previously unselected package git. Preparing to unpack .../39-git_1%3a2.17.1-1ubuntu0.15_amd64.deb ... Unpacking git (1:2.17.1-1ubuntu0.15) ... Selecting previously unselected package gnupg-l10n. Preparing to unpack .../40-gnupg-l10n_2.2.4-1ubuntu1.6_all.deb ... Unpacking gnupg-l10n (2.2.4-1ubuntu1.6) ... Selecting previously unselected package gnupg-utils. Preparing to unpack .../41-gnupg-utils_2.2.4-1ubuntu1.6_amd64.deb ... Unpacking gnupg-utils (2.2.4-1ubuntu1.6) ... Selecting previously unselected package gpg. Preparing to unpack .../42-gpg_2.2.4-1ubuntu1.6_amd64.deb ... Unpacking gpg (2.2.4-1ubuntu1.6) ... Selecting previously unselected package pinentry-curses. Preparing to unpack .../43-pinentry-curses_1.1.0-1_amd64.deb ... Unpacking pinentry-curses (1.1.0-1) ... Selecting previously unselected package gpg-agent. Preparing to unpack .../44-gpg-agent_2.2.4-1ubuntu1.6_amd64.deb ... Unpacking gpg-agent (2.2.4-1ubuntu1.6) ... Selecting previously unselected package gpg-wks-client. Preparing to unpack .../45-gpg-wks-client_2.2.4-1ubuntu1.6_amd64.deb ... Unpacking gpg-wks-client (2.2.4-1ubuntu1.6) ... Selecting previously unselected package gpg-wks-server. Preparing to unpack .../46-gpg-wks-server_2.2.4-1ubuntu1.6_amd64.deb ... Unpacking gpg-wks-server (2.2.4-1ubuntu1.6) ... Selecting previously unselected package gpgsm. Preparing to unpack .../47-gpgsm_2.2.4-1ubuntu1.6_amd64.deb ... Unpacking gpgsm (2.2.4-1ubuntu1.6) ... Selecting previously unselected package gnupg. Preparing to unpack .../48-gnupg_2.2.4-1ubuntu1.6_amd64.deb ... Unpacking gnupg (2.2.4-1ubuntu1.6) ... Selecting previously unselected package libsensors4:amd64. Preparing to unpack .../49-libsensors4_1%3a3.4.0-4ubuntu0.1_amd64.deb ... Unpacking libsensors4:amd64 (1:3.4.0-4ubuntu0.1) ... Selecting previously unselected package sysstat. Preparing to unpack .../50-sysstat_11.6.1-1ubuntu0.2_amd64.deb ... Unpacking sysstat (11.6.1-1ubuntu0.2) ... Selecting previously unselected package unzip. Preparing to unpack .../51-unzip_6.0-21ubuntu1.2_amd64.deb ... Unpacking unzip (6.0-21ubuntu1.2) ... Selecting previously unselected package gnupg2. Preparing to unpack .../52-gnupg2_2.2.4-1ubuntu1.6_all.deb ... Unpacking gnupg2 (2.2.4-1ubuntu1.6) ... Selecting previously unselected package parallel. Preparing to unpack .../53-parallel_20161222-1_all.deb ... Adding 'diversion of /usr/bin/parallel to /usr/bin/parallel.moreutils by parallel' Adding 'diversion of /usr/share/man/man1/parallel.1.gz to /usr/share/man/man1/parallel.moreutils.1.gz by parallel' Unpacking parallel (20161222-1) ... Setting up libnpth0:amd64 (1.5-3) ... Setting up readline-common (7.0-3) ... Setting up git-man (1:2.17.1-1ubuntu0.15) ... Setting up libexpat1:amd64 (2.2.5-3ubuntu0.9) ... Setting up libnghttp2-14:amd64 (1.30.0-1ubuntu1) ... Setting up libldap-common (2.4.45+dfsg-1ubuntu1.11) ... Setting up libreadline7:amd64 (7.0-3) ... Setting up libpsl5:amd64 (0.19.1-5build1) ... Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3ubuntu2.4) ... Setting up unzip (6.0-21ubuntu1.2) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3ubuntu2.4) ... Setting up libroken18-heimdal:amd64 (7.5.0+dfsg-1ubuntu0.3) ... Setting up libksba8:amd64 (1.3.5-2ubuntu0.18.04.2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1) ... Setting up perl-modules-5.26 (5.26.1-6ubuntu0.6) ... Setting up libgdbm5:amd64 (1.14.1-6) ... Setting up libkrb5support0:amd64 (1.16-2ubuntu0.3) ... Setting up ucf (3.0038) ... Setting up gnupg-l10n (2.2.4-1ubuntu1.6) ... Setting up bzip2 (1.0.6-8.1ubuntu0.2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libssl1.1:amd64 (1.1.1-1ubuntu2.1~18.04.20) ... Setting up libheimbase1-heimdal:amd64 (7.5.0+dfsg-1ubuntu0.3) ... Setting up openssl (1.1.1-1ubuntu2.1~18.04.20) ... Setting up libsqlite3-0:amd64 (3.22.0-1ubuntu0.7) ... Setting up libsensors4:amd64 (1:3.4.0-4ubuntu0.1) ... Setting up libgdbm-compat4:amd64 (1.14.1-6) ... Setting up libkeyutils1:amd64 (1.5.9-9.2ubuntu2.1) ... Setting up ca-certificates (20211016ubuntu0.18.04.1) ... Updating certificates in /etc/ssl/certs... 124 added, 0 removed; done. Setting up libassuan0:amd64 (2.5.1-2) ... Setting up libk5crypto3:amd64 (1.16-2ubuntu0.3) ... Setting up sysstat (11.6.1-1ubuntu0.2) ... Creating config file /etc/default/sysstat with new version update-alternatives: using /usr/bin/sar.sysstat to provide /usr/bin/sar (sar) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/sar.1.gz because associated file /usr/share/man/man1/sar.sysstat.1.gz (of link group sar) doesn't exist Setting up libwind0-heimdal:amd64 (7.5.0+dfsg-1ubuntu0.3) ... Setting up libasn1-8-heimdal:amd64 (7.5.0+dfsg-1ubuntu0.3) ... Setting up gpgconf (2.2.4-1ubuntu1.6) ... Setting up libhcrypto4-heimdal:amd64 (7.5.0+dfsg-1ubuntu0.3) ... Setting up libhx509-5-heimdal:amd64 (7.5.0+dfsg-1ubuntu0.3) ... Setting up libperl5.26:amd64 (5.26.1-6ubuntu0.6) ... Setting up gpgsm (2.2.4-1ubuntu1.6) ... Setting up gnupg-utils (2.2.4-1ubuntu1.6) ... Setting up pinentry-curses (1.1.0-1) ... Setting up libkrb5-3:amd64 (1.16-2ubuntu0.3) ... Setting up libkrb5-26-heimdal:amd64 (7.5.0+dfsg-1ubuntu0.3) ... Setting up libheimntlm0-heimdal:amd64 (7.5.0+dfsg-1ubuntu0.3) ... Setting up gpg (2.2.4-1ubuntu1.6) ... Setting up gpg-agent (2.2.4-1ubuntu1.6) ... Setting up gpg-wks-server (2.2.4-1ubuntu1.6) ... Setting up libgssapi-krb5-2:amd64 (1.16-2ubuntu0.3) ... Setting up perl (5.26.1-6ubuntu0.6) ... Setting up libgssapi3-heimdal:amd64 (7.5.0+dfsg-1ubuntu0.3) ... Setting up parallel (20161222-1) ... Setting up liberror-perl (0.17025-1) ... Setting up libldap-2.4-2:amd64 (2.4.45+dfsg-1ubuntu1.11) ... Setting up dirmngr (2.2.4-1ubuntu1.6) ... Setting up libcurl3-gnutls:amd64 (7.58.0-2ubuntu3.22) ... Setting up libcurl4:amd64 (7.58.0-2ubuntu3.22) ... Setting up gpg-wks-client (2.2.4-1ubuntu1.6) ... Setting up git (1:2.17.1-1ubuntu0.15) ... Setting up curl (7.58.0-2ubuntu3.22) ... Setting up gnupg (2.2.4-1ubuntu1.6) ... Setting up gnupg2 (2.2.4-1ubuntu1.6) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Processing triggers for ca-certificates (20211016ubuntu0.18.04.1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Removing intermediate container 9ea30e09a310 ---> d0060d6e842d Step 3/21 : RUN curl --insecure -o anaconda.sh https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh && bash anaconda.sh -b -p /opt/anaconda && rm -f anaconda.sh ---> Running in c3256b668956 % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 Removing intermediate container c3256b668956 ---> e0bb3d9cab65 Step 4/21 : RUN curl -o /opt/atlases-nifti.zip -sL http://cobralab.net/files/atlases-nifti.zip && mkdir /opt/atlases-nifti && unzip /opt/atlases-nifti.zip -d /opt && curl -sL http://cobralab.net/files/brains_t1_nifti.tar.bz2 | tar xvj -C /opt/atlases-nifti && curl -o /opt/atlases-nifti/colin.zip -sL http://packages.bic.mni.mcgill.ca/mni-models/colin27/mni_colin27_1998_nifti.zip && mkdir /opt/atlases-nifti/colin && unzip /opt/atlases-nifti/colin.zip -d /opt/atlases-nifti/colin && rm -f /opt/atlases-nifti/colin.zip && gzip /opt/atlases-nifti/colin/colin27_t1_tal_lin.nii ---> Running in 0caf50de2ce4 Archive: /opt/atlases-nifti.zip inflating: /opt/atlases-nifti/README.md creating: /opt/atlases-nifti/amygdala/ creating: /opt/atlases-nifti/amygdala/labels/ inflating: /opt/atlases-nifti/amygdala/labels/brain2_labels.nii.gz inflating: /opt/atlases-nifti/amygdala/labels/brain5_labels.nii.gz inflating: /opt/atlases-nifti/amygdala/labels/brain4_labels.nii.gz inflating: /opt/atlases-nifti/amygdala/labels/brain1_labels.nii.gz inflating: /opt/atlases-nifti/amygdala/labels/brain3_labels.nii.gz inflating: /opt/atlases-nifti/amygdala/README.md inflating: /opt/atlases-nifti/amygdala/label-names.csv creating: /opt/atlases-nifti/hippocampus-subfields/ inflating: /opt/atlases-nifti/hippocampus-subfields/README.md creating: /opt/atlases-nifti/hippocampus-subfields/model/ creating: /opt/atlases-nifti/hippocampus-subfields/labels/ inflating: /opt/atlases-nifti/hippocampus-subfields/labels/brain4_labels.nii.gz inflating: /opt/atlases-nifti/hippocampus-subfields/labels/brain1_labels.nii.gz inflating: /opt/atlases-nifti/hippocampus-subfields/labels/brain3_labels.nii.gz inflating: /opt/atlases-nifti/hippocampus-subfields/labels/brain2_labels.nii.gz inflating: /opt/atlases-nifti/hippocampus-subfields/labels/brain5_labels.nii.gz inflating: /opt/atlases-nifti/hippocampus-subfields/label-names.csv creating: /opt/atlases-nifti/hippocampus-subfields/surfaces/ inflating: /opt/atlases-nifti/hippocampus-subfields/surfaces/right_CA4.DG.obj inflating: /opt/atlases-nifti/hippocampus-subfields/surfaces/right_CA1.obj inflating: /opt/atlases-nifti/hippocampus-subfields/surfaces/left_CA4.DG.obj inflating: /opt/atlases-nifti/hippocampus-subfields/surfaces/new_righthc.obj inflating: /opt/atlases-nifti/hippocampus-subfields/surfaces/right_2700.obj inflating: /opt/atlases-nifti/hippocampus-subfields/surfaces/left_SR.obj inflating: /opt/atlases-nifti/hippocampus-subfields/surfaces/left_sub.obj inflating: /opt/atlases-nifti/hippocampus-subfields/surfaces/left_2700.obj inflating: /opt/atlases-nifti/hippocampus-subfields/surfaces/right_sub.obj inflating: /opt/atlases-nifti/hippocampus-subfields/surfaces/right_CA2.CA3.obj inflating: /opt/atlases-nifti/hippocampus-subfields/surfaces/left_CA2.CA3.obj inflating: /opt/atlases-nifti/hippocampus-subfields/surfaces/new_lefthc.obj inflating: /opt/atlases-nifti/hippocampus-subfields/surfaces/right_SR.obj inflating: /opt/atlases-nifti/hippocampus-subfields/surfaces/left_CA1.obj creating: /opt/atlases-nifti/colin27-subcortical/ inflating: /opt/atlases-nifti/colin27-subcortical/README.md inflating: /opt/atlases-nifti/colin27-subcortical/label-names-striatum-subdivisions.csv inflating: /opt/atlases-nifti/colin27-subcortical/label-names-thalamus-subdivisions.csv creating: /opt/atlases-nifti/colin27-subcortical/labels/ inflating: /opt/atlases-nifti/colin27-subcortical/label-names-thalamus-globus_pallidus-striatum.csv creating: /opt/atlases-nifti/colin27-subcortical/surfaces/ inflating: /opt/atlases-nifti/colin27-subcortical/surfaces/thalamus-subdivisions-right-labels.txt inflating: /opt/atlases-nifti/colin27-subcortical/surfaces/striatum-left.obj inflating: /opt/atlases-nifti/colin27-subcortical/surfaces/striatum-right.obj inflating: /opt/atlases-nifti/colin27-subcortical/surfaces/striatum-subdivisions-left-labels.txt inflating: /opt/atlases-nifti/colin27-subcortical/surfaces/thalamus-left.obj inflating: /opt/atlases-nifti/colin27-subcortical/surfaces/thalamus-subdivisions-left-labels.txt inflating: /opt/atlases-nifti/colin27-subcortical/surfaces/striatum-subdivisions-right-labels.txt inflating: /opt/atlases-nifti/colin27-subcortical/surfaces/globus_pallidus-right-labels.txt inflating: /opt/atlases-nifti/colin27-subcortical/surfaces/globus_pallidus-right.obj inflating: /opt/atlases-nifti/colin27-subcortical/surfaces/globus_pallidus-left.obj inflating: /opt/atlases-nifti/colin27-subcortical/surfaces/globus_pallidus-left-labels.txt inflating: /opt/atlases-nifti/colin27-subcortical/surfaces/thalamus-right.obj creating: /opt/atlases-nifti/colin27-subcortical/stl/ inflating: /opt/atlases-nifti/colin27-subcortical/stl/thalamus.stl inflating: /opt/atlases-nifti/colin27-subcortical/stl/striatum-left.stl inflating: /opt/atlases-nifti/colin27-subcortical/stl/globus_pallidus.stl inflating: /opt/atlases-nifti/colin27-subcortical/stl/thalamus-left.stl inflating: /opt/atlases-nifti/colin27-subcortical/stl/striatum-right.stl inflating: /opt/atlases-nifti/colin27-subcortical/stl/striatum.stl inflating: /opt/atlases-nifti/colin27-subcortical/stl/globus_pallidus-left.stl inflating: /opt/atlases-nifti/colin27-subcortical/stl/globus_pallidus-right.stl inflating: /opt/atlases-nifti/colin27-subcortical/stl/thalamus-right.stl creating: /opt/atlases-nifti/cerebellum/ creating: /opt/atlases-nifti/cerebellum/labels/ inflating: /opt/atlases-nifti/cerebellum/labels/brain5_labels.nii.gz inflating: /opt/atlases-nifti/cerebellum/labels/brain2_labels.nii.gz inflating: /opt/atlases-nifti/cerebellum/labels/brain3_labels.nii.gz inflating: /opt/atlases-nifti/cerebellum/labels/brain4_labels.nii.gz inflating: /opt/atlases-nifti/cerebellum/labels/brain1_labels.nii.gz inflating: /opt/atlases-nifti/cerebellum/label-names.csv inflating: /opt/atlases-nifti/cerebellum/README.md creating: /opt/atlases-nifti/hippocampus-whitematter/ creating: /opt/atlases-nifti/hippocampus-whitematter/labels/ inflating: /opt/atlases-nifti/hippocampus-whitematter/labels/brain5_labels.nii.gz inflating: /opt/atlases-nifti/hippocampus-whitematter/labels/brain2_labels.nii.gz inflating: /opt/atlases-nifti/hippocampus-whitematter/labels/brain3_labels.nii.gz inflating: /opt/atlases-nifti/hippocampus-whitematter/labels/brain4_labels.nii.gz inflating: /opt/atlases-nifti/hippocampus-whitematter/labels/brain1_labels.nii.gz inflating: /opt/atlases-nifti/hippocampus-whitematter/README.md creating: /opt/atlases-nifti/bin/ inflating: /opt/atlases-nifti/bin/.obj2stl.sh.swp inflating: /opt/atlases-nifti/bin/obj2stl.sh inflating: /opt/atlases-nifti/bin/vtk-polydata-to-stl.py inflating: /opt/atlases-nifti/colin27-subcortical/labels/thalamus-globus_pallidus-striatum.nii.gz inflating: /opt/atlases-nifti/colin27-subcortical/labels/thalamus-subdivisions.nii.gz inflating: /opt/atlases-nifti/colin27-subcortical/labels/striatum-subdivisions.nii.gz brains_t1_nifti/ brains_t1_nifti/brain4_t1.nii.gz brains_t1_nifti/brain5_t1.nii.gz brains_t1_nifti/brain2_t1.nii.gz brains_t1_nifti/brain3_t1.nii.gz brains_t1_nifti/brain1_t1.nii.gz Archive: /opt/atlases-nifti/colin.zip inflating: /opt/atlases-nifti/colin/colin27_t1_tal_lin_headmask.nii inflating: /opt/atlases-nifti/colin/colin27_t1_tal_lin_mask.nii inflating: /opt/atlases-nifti/colin/colin27_t1_tal_lin.nii Removing intermediate container 0caf50de2ce4 ---> 3940f7046e8d Step 5/21 : RUN curl --insecure -sL https://deb.nodesource.com/setup_10.x | bash - && apt-get install -y --no-install-recommends --auto-remove nodejs && rm -rf /var/lib/apt/lists/* ---> Running in 78fbb6bd9803 ================================================================================ ================================================================================ DEPRECATION WARNING Node.js 10.x is no longer actively supported! You will not receive security or critical stability updates for this version. You should migrate to a supported version of Node.js as soon as possible. Use the installation script that corresponds to the version of Node.js you wish to install. e.g. * https://deb.nodesource.com/setup_12.x — Node.js 12 LTS "Erbium" * https://deb.nodesource.com/setup_14.x — Node.js 14 LTS "Fermium" (recommended) * https://deb.nodesource.com/setup_16.x — Node.js 16 "Gallium" Please see https://github.com/nodejs/Release for details about which version may be appropriate for you. The NodeSource Node.js distributions repository contains information both about supported versions of Node.js and supported Linux distributions. To learn more about usage, see the repository: https://github.com/nodesource/distributions ================================================================================ ================================================================================ Continuing in 20 seconds ... ## Installing the NodeSource Node.js 10.x repo... ## Populating apt-get cache... + apt-get update Get:1 http://archive.ubuntu.com/ubuntu bionic InRelease [242 kB] Get:2 http://security.ubuntu.com/ubuntu bionic-security InRelease [88.7 kB] Get:3 http://archive.ubuntu.com/ubuntu bionic-updates InRelease [88.7 kB] Get:4 http://archive.ubuntu.com/ubuntu bionic-backports InRelease [83.3 kB] Get:5 http://security.ubuntu.com/ubuntu bionic-security/universe Sources [385 kB] Get:6 http://security.ubuntu.com/ubuntu bionic-security/restricted amd64 Packages [1389 kB] Get:7 http://archive.ubuntu.com/ubuntu bionic/universe Sources [11.5 MB] Get:8 http://security.ubuntu.com/ubuntu bionic-security/multiverse amd64 Packages [22.9 kB] Get:9 http://security.ubuntu.com/ubuntu bionic-security/universe amd64 Packages [1578 kB] Get:10 http://security.ubuntu.com/ubuntu bionic-security/main amd64 Packages [3161 kB] Get:11 http://archive.ubuntu.com/ubuntu bionic/main amd64 Packages [1344 kB] Get:12 http://archive.ubuntu.com/ubuntu bionic/restricted amd64 Packages [13.5 kB] Get:13 http://archive.ubuntu.com/ubuntu bionic/multiverse amd64 Packages [186 kB] Get:14 http://archive.ubuntu.com/ubuntu bionic/universe amd64 Packages [11.3 MB] Get:15 http://archive.ubuntu.com/ubuntu bionic-updates/universe Sources [618 kB] Get:16 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 Packages [3581 kB] Get:17 http://archive.ubuntu.com/ubuntu bionic-updates/restricted amd64 Packages [1430 kB] Get:18 http://archive.ubuntu.com/ubuntu bionic-updates/universe amd64 Packages [2353 kB] Get:19 http://archive.ubuntu.com/ubuntu bionic-updates/multiverse amd64 Packages [30.8 kB] Get:20 http://archive.ubuntu.com/ubuntu bionic-backports/main amd64 Packages [64.0 kB] Get:21 http://archive.ubuntu.com/ubuntu bionic-backports/universe amd64 Packages [20.5 kB] Fetched 39.5 MB in 3s (15.1 MB/s) Reading package lists... ## Installing packages required for setup: lsb-release... + apt-get install -y lsb-release > /dev/null 2>&1 ## Confirming "bionic" is supported... + curl -sLf -o /dev/null 'https://deb.nodesource.com/node_10.x/dists/bionic/Release' ## Adding the NodeSource signing key to your keyring... + curl -s https://deb.nodesource.com/gpgkey/nodesource.gpg.key | gpg --dearmor | tee /usr/share/keyrings/nodesource.gpg >/dev/null ## Creating apt sources list file for the NodeSource Node.js 10.x repo... + echo 'deb [signed-by=/usr/share/keyrings/nodesource.gpg] https://deb.nodesource.com/node_10.x bionic main' > /etc/apt/sources.list.d/nodesource.list + echo 'deb-src [signed-by=/usr/share/keyrings/nodesource.gpg] https://deb.nodesource.com/node_10.x bionic main' >> /etc/apt/sources.list.d/nodesource.list ## Running `apt-get update` for you... + apt-get update Get:1 https://deb.nodesource.com/node_10.x bionic InRelease [4584 B] Get:2 https://deb.nodesource.com/node_10.x bionic/main amd64 Packages [767 B] Hit:3 http://security.ubuntu.com/ubuntu bionic-security InRelease Hit:4 http://archive.ubuntu.com/ubuntu bionic InRelease Hit:5 http://archive.ubuntu.com/ubuntu bionic-updates InRelease Hit:6 http://archive.ubuntu.com/ubuntu bionic-backports InRelease Fetched 5351 B in 0s (13.9 kB/s) Reading package lists... ## Run `sudo apt-get install -y nodejs` to install Node.js 10.x and npm ## You may also need development tools to build native addons: sudo apt-get install gcc g++ make ## To install the Yarn package manager, run: curl -sL https://dl.yarnpkg.com/debian/pubkey.gpg | gpg --dearmor | sudo tee /usr/share/keyrings/yarnkey.gpg >/dev/null echo "deb [signed-by=/usr/share/keyrings/yarnkey.gpg] https://dl.yarnpkg.com/debian stable main" | sudo tee /etc/apt/sources.list.d/yarn.list sudo apt-get update && sudo apt-get install yarn Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libpython2.7-minimal python-minimal python2.7-minimal Suggested packages: binfmt-support Recommended packages: libpython2.7-stdlib python python2.7 The following NEW packages will be installed: libpython2.7-minimal nodejs python-minimal python2.7-minimal 0 upgraded, 4 newly installed, 0 to remove and 56 not upgraded. Need to get 17.6 MB of archives. After this operation, 87.3 MB of additional disk space will be used. Get:1 https://deb.nodesource.com/node_10.x bionic/main amd64 nodejs amd64 10.24.1-1nodesource1 [15.9 MB] Get:2 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libpython2.7-minimal amd64 2.7.17-1~18.04ubuntu1.10 [336 kB] Get:3 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 python2.7-minimal amd64 2.7.17-1~18.04ubuntu1.10 [1290 kB] Get:4 http://archive.ubuntu.com/ubuntu bionic/main amd64 python-minimal amd64 2.7.15~rc1-1 [28.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.6 MB in 1s (23.4 MB/s) Selecting previously unselected package libpython2.7-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 8496 files and directories currently installed.) Preparing to unpack .../libpython2.7-minimal_2.7.17-1~18.04ubuntu1.10_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.17-1~18.04ubuntu1.10) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../python2.7-minimal_2.7.17-1~18.04ubuntu1.10_amd64.deb ... Unpacking python2.7-minimal (2.7.17-1~18.04ubuntu1.10) ... Selecting previously unselected package python-minimal. Preparing to unpack .../python-minimal_2.7.15~rc1-1_amd64.deb ... Unpacking python-minimal (2.7.15~rc1-1) ... Selecting previously unselected package nodejs. Preparing to unpack .../nodejs_10.24.1-1nodesource1_amd64.deb ... Unpacking nodejs (10.24.1-1nodesource1) ... Setting up libpython2.7-minimal:amd64 (2.7.17-1~18.04ubuntu1.10) ... Setting up python2.7-minimal (2.7.17-1~18.04ubuntu1.10) ... Setting up python-minimal (2.7.15~rc1-1) ... Setting up nodejs (10.24.1-1nodesource1) ... Removing intermediate container 78fbb6bd9803 ---> c83cbf551fa7 Step 6/21 : ENV CONDA_PATH "/opt/anaconda" ---> Running in 9c49e454c556 Removing intermediate container 9c49e454c556 ---> 6761e8858939 Step 7/21 : RUN /opt/anaconda/bin/conda config --append channels conda-forge ---> Running in 40da775729a9 /bin/sh: 1: /opt/anaconda/bin/conda: not found The command '/bin/sh -c /opt/anaconda/bin/conda config --append channels conda-forge' returned a non-zero code: 127 Exited with code exit status 127