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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method("$<-",alt_tbl)
S3method("$<-",cov_tbl)
S3method("$<-",geno_tbl)
S3method("$<-",hap_tbl)
S3method("$<-",mut_freq)
S3method("$<-",mut_prev)
S3method("$<-",ref_alt_cov_tbl)
S3method("$<-",ref_tbl)
S3method("[",alt_tbl)
S3method("[",cov_tbl)
S3method("[",geno_tbl)
S3method("[",hap_tbl)
S3method("[",mut_freq)
S3method("[",mut_prev)
S3method("[",ref_alt_cov_tbl)
S3method("[",ref_tbl)
S3method("names<-",alt_tbl)
S3method("names<-",cov_tbl)
S3method("names<-",geno_tbl)
S3method("names<-",hap_tbl)
S3method("names<-",mut_freq)
S3method("names<-",mut_prev)
S3method("names<-",ref_alt_cov_tbl)
S3method("names<-",ref_tbl)
S3method(autoplot,mut_freq)
S3method(autoplot,mut_prev)
S3method(label_mutations,default)
S3method(label_mutations,ref_alt_cov_tbl)
S3method(mutation_frequency,default)
S3method(mutation_frequency,ref_alt_cov_tbl)
S3method(mutation_prevalence,default)
S3method(mutation_prevalence,geno_tbl)
S3method(mutation_prevalence,ref_alt_cov_tbl)
S3method(plot,mut_freq)
S3method(plot,mut_prev)
S3method(plot_coverage,cov_tbl)
S3method(plot_coverage,default)
S3method(plot_coverage,ref_alt_cov_tbl)
S3method(tbl_sum,alt_tbl)
S3method(tbl_sum,cov_tbl)
S3method(tbl_sum,geno_tbl)
S3method(tbl_sum,hap_tbl)
S3method(tbl_sum,ref_alt_cov_tbl)
S3method(tbl_sum,ref_tbl)
export("%>%")
export(":=")
export(.data)
export(arrange_natural)
export(as_label)
export(as_name)
export(chromosome_map)
export(convert_single)
export(convert_three)
export(enquo)
export(enquos)
export(expr)
export(filter_aa_change)
export(filter_alt_umi_count)
export(filter_coverage)
export(filter_gene)
export(filter_mutation_name)
export(filter_ref_umi_count)
export(filter_targeted)
export(label_mutations)
export(miplicorn_example)
export(mutation_frequency)
export(mutation_prevalence)
export(plot_chromoMap)
export(plot_coverage)
export(plot_karyoploteR)
export(plot_mutation_frequency)
export(plot_mutation_prevalence)
export(read)
export(read_file)
export(read_tbl_alternate)
export(read_tbl_coverage)
export(read_tbl_genotype)
export(read_tbl_haplotype)
export(read_tbl_ref_alt_cov)
export(read_tbl_reference)
export(theme_miplicorn)
export(theme_rainbow)
importFrom(cli,cli_abort)
importFrom(cli,cli_inform)
importFrom(cli,cli_warn)
importFrom(ggplot2,"%+replace%")
importFrom(ggplot2,autoplot)
importFrom(glue,backtick)
importFrom(graphics,plot)
importFrom(lifecycle,deprecated)
importFrom(lifecycle,is_present)
importFrom(magrittr,"%>%")
importFrom(rlang,":=")
importFrom(rlang,.data)
importFrom(rlang,as_label)
importFrom(rlang,as_name)
importFrom(rlang,caller_env)
importFrom(rlang,enquo)
importFrom(rlang,enquos)
importFrom(rlang,expr)
importFrom(stringr,str_length)
importFrom(tibble,tbl_sum)