From 0c941b8380ae9276739aeb24c7212deae45bd62c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Fr=C3=A9d=C3=A9ric=20Branchaud-Charron?= Date: Thu, 4 Apr 2024 13:25:32 -0400 Subject: [PATCH] Fix typo in logging and bump structlog (#285) * Fix typo in logging and bump structlog * Update dataset in test * Add Accelerate for GHCI --- baal/active/heuristics/stochastics.py | 2 +- poetry.lock | 605 +++++++++++++++++++------- pyproject.toml | 5 +- tests/active/dataset/dataset_test.py | 2 +- 4 files changed, 445 insertions(+), 169 deletions(-) diff --git a/baal/active/heuristics/stochastics.py b/baal/active/heuristics/stochastics.py index 698a0618..be7bedb8 100644 --- a/baal/active/heuristics/stochastics.py +++ b/baal/active/heuristics/stochastics.py @@ -47,7 +47,7 @@ def get_ranks(self, predictions): # TODO Seed? if (distributions > 0).sum() < self.query_size: - log.warnings("Not enough values, return random") + log.warn("Not enough values, return random") distributions = np.ones_like(distributions) / len(distributions) return ( np.random.choice(len(distributions), self.query_size, replace=False, p=distributions), diff --git a/poetry.lock b/poetry.lock index 6118c9f5..1c69a8f7 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,34 @@ -# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. + +[[package]] +name = "accelerate" +version = "0.28.0" +description = "Accelerate" +optional = true +python-versions = ">=3.8.0" +files = [ + {file = "accelerate-0.28.0-py3-none-any.whl", hash = "sha256:8ae25f8a8dc4cf12283842c469113836300545fb0dfa46fef331fb0a2ac8b421"}, + {file = "accelerate-0.28.0.tar.gz", hash = "sha256:32019a49f4b3a85cc179ac4e38e9e2971f1a997dee026be0512816499464c4d5"}, +] + +[package.dependencies] +huggingface-hub = "*" +numpy = ">=1.17" +packaging = ">=20.0" +psutil = "*" +pyyaml = "*" +safetensors = ">=0.3.1" +torch = ">=1.10.0" + +[package.extras] 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"optuna", "parameterized", "phonemizer", "protobuf", "psutil", "pyctcdecode (>=0.4.0)", "pydantic", "pytest (>=7.2.0,<8.0.0)", "pytest-timeout", "pytest-xdist", "ray[tune] (>=2.7.0)", "rhoknp (>=1.1.0,<1.3.1)", "rjieba", "rouge-score (!=0.0.7,!=0.0.8,!=0.1,!=0.1.1)", "ruff (==0.1.5)", "sacrebleu (>=1.4.12,<2.0.0)", "sacremoses", "scikit-learn", "sentencepiece (>=0.1.91,!=0.1.92)", "sigopt", "sudachidict-core (>=20220729)", "sudachipy (>=0.6.6)", "tensorboard", "timeout-decorator", "timm", "tokenizers (>=0.14,<0.19)", "torch", "torchaudio", "torchvision", "unidic (>=1.0.2)", "unidic-lite (>=1.0.7)", "urllib3 (<2.0.0)"] +docs = ["Pillow (>=10.0.1,<=15.0)", "accelerate (>=0.21.0)", "av (==9.2.0)", "codecarbon (==1.2.0)", "decord (==0.6.0)", "flax (>=0.4.1,<=0.7.0)", "hf-doc-builder", "jax (>=0.4.1,<=0.4.13)", "jaxlib (>=0.4.1,<=0.4.13)", "kenlm", "keras-nlp (>=0.3.1)", "librosa", "onnxconverter-common", "optax (>=0.0.8,<=0.1.4)", "optuna", "phonemizer", "protobuf", "pyctcdecode (>=0.4.0)", "ray[tune] (>=2.7.0)", "sentencepiece (>=0.1.91,!=0.1.92)", "sigopt", "tensorflow (>=2.6,<2.16)", "tensorflow-text (<2.16)", "tf2onnx", "timm", "tokenizers (>=0.14,<0.19)", "torch", "torchaudio", "torchvision"] docs-specific = ["hf-doc-builder"] -fairscale = ["fairscale (>0.3)"] -flax = ["flax (>=0.4.1)", "jax (>=0.2.8,!=0.3.2,<=0.3.6)", "jaxlib (>=0.1.65,<=0.3.6)", "optax (>=0.0.8)"] +flax = ["flax (>=0.4.1,<=0.7.0)", "jax (>=0.4.1,<=0.4.13)", "jaxlib (>=0.4.1,<=0.4.13)", "optax (>=0.0.8,<=0.1.4)"] flax-speech = ["kenlm", "librosa", "phonemizer", "pyctcdecode (>=0.4.0)"] ftfy = ["ftfy"] -integrations = ["optuna", "ray[tune]", "sigopt"] -ja = ["fugashi (>=1.0)", "ipadic (>=1.0.0,<2.0)", "rhoknp (>=1.1.0)", "sudachidict-core (>=20220729)", "sudachipy (>=0.6.6)", "unidic (>=1.0.2)", "unidic-lite (>=1.0.7)"] +integrations = ["optuna", "ray[tune] (>=2.7.0)", "sigopt"] +ja = ["fugashi (>=1.0)", "ipadic (>=1.0.0,<2.0)", "rhoknp (>=1.1.0,<1.3.1)", "sudachidict-core (>=20220729)", "sudachipy (>=0.6.6)", "unidic (>=1.0.2)", "unidic-lite (>=1.0.7)"] modelcreation = ["cookiecutter (==1.7.3)"] -natten = ["natten (>=0.14.4)"] +natten = ["natten (>=0.14.6,<0.15.0)"] onnx = ["onnxconverter-common", "onnxruntime (>=1.4.0)", "onnxruntime-tools (>=1.4.2)", "tf2onnx"] onnxruntime = ["onnxruntime (>=1.4.0)", "onnxruntime-tools (>=1.4.2)"] optuna = ["optuna"] -quality = ["GitPython (<3.1.19)", "black (>=23.1,<24.0)", "datasets (!=2.5.0)", "hf-doc-builder (>=0.3.0)", "isort (>=5.5.4)", "ruff (>=0.0.241)"] -ray = ["ray[tune]"] +quality = ["GitPython (<3.1.19)", "datasets (!=2.5.0)", "hf-doc-builder (>=0.3.0)", "isort (>=5.5.4)", "ruff (==0.1.5)", "urllib3 (<2.0.0)"] +ray = ["ray[tune] (>=2.7.0)"] retrieval = ["datasets (!=2.5.0)", "faiss-cpu"] sagemaker = ["sagemaker (>=2.31.0)"] -sentencepiece = ["protobuf (<=3.20.2)", "sentencepiece (>=0.1.91,!=0.1.92)"] +sentencepiece = ["protobuf", "sentencepiece (>=0.1.91,!=0.1.92)"] serving = ["fastapi", "pydantic", "starlette", "uvicorn"] sigopt = ["sigopt"] sklearn = ["scikit-learn"] speech = ["kenlm", "librosa", "phonemizer", "pyctcdecode (>=0.4.0)", "torchaudio"] -testing = ["GitPython (<3.1.19)", "beautifulsoup4", "black (>=23.1,<24.0)", "cookiecutter (==1.7.3)", "datasets (!=2.5.0)", "dill (<0.3.5)", "evaluate (>=0.2.0)", "faiss-cpu", "hf-doc-builder (>=0.3.0)", "nltk", "parameterized", "protobuf (<=3.20.2)", "psutil", "pytest", "pytest-timeout", "pytest-xdist", "rjieba", "rouge-score (!=0.0.7,!=0.0.8,!=0.1,!=0.1.1)", "sacrebleu (>=1.4.12,<2.0.0)", "sacremoses", "safetensors (>=0.2.1)", "timeout-decorator"] -tf = ["keras-nlp (>=0.3.1)", "onnxconverter-common", "tensorflow (>=2.4,<2.12)", "tensorflow-text", "tf2onnx"] -tf-cpu = ["keras-nlp (>=0.3.1)", "onnxconverter-common", "tensorflow-cpu (>=2.4,<2.12)", "tensorflow-text", "tf2onnx"] +testing = ["GitPython (<3.1.19)", "beautifulsoup4", "cookiecutter (==1.7.3)", "datasets (!=2.5.0)", "dill (<0.3.5)", "evaluate (>=0.2.0)", "faiss-cpu", "hf-doc-builder (>=0.3.0)", "nltk", "parameterized", "protobuf", "psutil", "pydantic", "pytest (>=7.2.0,<8.0.0)", "pytest-timeout", "pytest-xdist", "rjieba", "rouge-score (!=0.0.7,!=0.0.8,!=0.1,!=0.1.1)", "ruff (==0.1.5)", "sacrebleu (>=1.4.12,<2.0.0)", "sacremoses", "tensorboard", "timeout-decorator"] +tf = ["keras-nlp (>=0.3.1)", "onnxconverter-common", "tensorflow (>=2.6,<2.16)", "tensorflow-text (<2.16)", "tf2onnx"] +tf-cpu = ["keras-nlp (>=0.3.1)", "onnxconverter-common", "tensorflow-cpu (>=2.6,<2.16)", "tensorflow-text (<2.16)", "tf2onnx"] tf-speech = ["kenlm", "librosa", "phonemizer", "pyctcdecode (>=0.4.0)"] timm = ["timm"] -tokenizers = ["tokenizers (>=0.11.1,!=0.11.3,<0.14)"] -torch = ["torch (>=1.7,!=1.12.0)"] +tokenizers = ["tokenizers (>=0.14,<0.19)"] +torch = ["accelerate (>=0.21.0)", "torch"] torch-speech = ["kenlm", "librosa", "phonemizer", "pyctcdecode (>=0.4.0)", "torchaudio"] -torch-vision = ["Pillow", "torchvision"] -torchhub = ["filelock", "huggingface-hub (>=0.11.0,<1.0)", "importlib-metadata", "numpy (>=1.17)", "packaging (>=20.0)", "protobuf (<=3.20.2)", "regex (!=2019.12.17)", "requests", "sentencepiece (>=0.1.91,!=0.1.92)", "tokenizers (>=0.11.1,!=0.11.3,<0.14)", "torch (>=1.7,!=1.12.0)", "tqdm (>=4.27)"] +torch-vision = ["Pillow (>=10.0.1,<=15.0)", "torchvision"] +torchhub = ["filelock", "huggingface-hub (>=0.19.3,<1.0)", "importlib-metadata", "numpy (>=1.17)", "packaging (>=20.0)", "protobuf", "regex (!=2019.12.17)", "requests", "sentencepiece (>=0.1.91,!=0.1.92)", "tokenizers (>=0.14,<0.19)", "torch", "tqdm (>=4.27)"] video = ["av (==9.2.0)", "decord (==0.6.0)"] -vision = ["Pillow"] +vision = ["Pillow (>=10.0.1,<=15.0)"] [[package]] name = "triton" @@ -4144,10 +4419,10 @@ docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"] [extras] -nlp = ["datasets", "transformers"] +nlp = ["accelerate", "datasets", "transformers"] vision = ["lightning-flash", "torchvision"] [metadata] lock-version = "2.0" python-versions = ">=3.8,<4" -content-hash = "f834792301506d158bc801b7c040ee5ecc9ef6b0d412b8acce0f7bd1a9547fcc" +content-hash = "22e8d75d7f7a07aacf0e135dba388aff00046daf4b15d13fd61414d2fbadb845" diff --git a/pyproject.toml b/pyproject.toml index 0adc261a..d739c121 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -22,7 +22,7 @@ numpy = "^1.21.2" matplotlib = "^3.4.3" Pillow = ">=6.2.0" tqdm = "^4.62.2" -structlog = "^21.1.0" +structlog = "^22.0.0" scikit-learn = "^1.0.0" scipy = "^1.7.1" @@ -32,6 +32,7 @@ lightning-flash = { version = ">=0.7.5", optional=true } # NLP transformers = {version = ">=4.10.2", optional=true} +accelerate = {version = "^0.28.0", optional=true} datasets = {version = ">=1.11.0", optional=true} [tool.poetry.dev-dependencies] @@ -57,7 +58,7 @@ mkdocs-exclude-search = "^0.6.4" [tool.poetry.extras] vision = ["torchvision", "lightning-flash"] -nlp = ["transformers", "datasets"] +nlp = ["transformers", "datasets", "accelerate"] [build-system] requires = ["poetry-core>=1.0.0"] diff --git a/tests/active/dataset/dataset_test.py b/tests/active/dataset/dataset_test.py index b5f1e441..1c3eae55 100644 --- a/tests/active/dataset/dataset_test.py +++ b/tests/active/dataset/dataset_test.py @@ -185,7 +185,7 @@ def test_label_randomly_full(self): def test_arrowds(): - dataset = HFdata.load_dataset('glue', 'sst2')['test'] + dataset = HFdata.load_dataset('stanfordnlp/sst2')['test'] dataset = ActiveLearningDataset(dataset) dataset.label(np.arange(10)) assert len(dataset) == 10