corr220mod.yaml

networktype: undirected      # directed | undirected
edgetable:
  filetype: csv            # optional, csv/tsv/xlsx/xls
  file: corr220c8.csv         # .csv, .tsv, .xlsx/.xls
  sourcecolumn: source     # name of source column (col1 if noheader is true)
  targetcolumn: target     # name of target column (col2 if noheader is true)
nodetable:                 # optional; nodes will be inferred from edge table if omitted
  file: TBDE-PE-detr.csv       # .csv, .tsv, .xlsx/.xls
  idcolumn: Gene symbol         # name of node id column
outputfiles: 
  drawing: corr220mod.svg         # name of output file
layout: neato              # neato|dot|twopi|circle|fdp|sfdp|patchwork|dotfilename
networkanalysis: false     # set to true to generate a number of graph theoretical quantities
nodegroups:                # optional; define node groups using boolean queries
  PE: TBDEPEgene == 'YES'       # node group name: boolean expression with node table column names
graphattrs:
  outputorder: edgesfirst
  overlap: false
nodestyles:                # define node styles for node groups
  default:                 # optional; default style
    shape: circle
    fontname: Helvetica-Bold
    width: 1.0
    fillcolor:
      type: discrete
      colexpr: TBDEModule
      map:
        M1 - brown: '#a52a2a'
        M2 - pink: '#ffc0cb'
        M3 - magenta: '#ff00ff'
        M4 - turquoise: '#40e0d0'
        M5 - blue: '#0000ff'
        M6 - green: '#00ff00'
        M7 - red: '#ff0000'
        M8 - yellow: '#ff0000'
        M9 - black: '#000000'
    style: filled
    fontcolor:
      type: discrete
      colexpr: TBDEModule
      map:
        M1 - brown: white
        M5 - blue: white
        M7 - red: white
        M9 - black: white
    penwidth: 1
  PE:
    color:
      type: direct
      colexpr: PlacModulecolors
    penwidth: 30
    width: 3
    fontsize: 40.0