[BUG]

[fersity]

When I run this:

...
rgi main --input_sequence "$fasta_file" -t contig --output_file "$output_file" --clean -n 4
...

It shown:

WARNING 2025-01-10 17:16:34,570 : Exception: <class 'ValueError'> -> invalid literal for int() with base 10: '1Va' -> model_type: variant

or:

WARNING 2025-01-10 17:29:54,919 : Exception: <class 'ValueError'> -> invalid literal for int() with base 10: '1Va' -> model_type: variant
WARNING 2025-01-10 17:30:04,032 : partial gene in card reference: OXA-140

Input file
id-16681.fas (from pubMLST)
id-18463.fas (from pubMLST)
https://pubmlst.org/bigsdb?page=info&db=pubmlst_escherichia_isolates&id=16681
https://pubmlst.org/bigsdb?page=info&db=pubmlst_escherichia_isolates&id=18463

CARD Version
The version of CARD you are using. Please ensure it is up to date.

RGI version
rgi main --version
6.0.3
rgi database --version
4.0.0

Desktop
WSL2 ubuntu22, conda

[Somebodyatthdoor]

Just to confirm, I am also getting exactly the same error warning using the newest version of RGI.

[T129gb]

I have the exactly the same error warning too ;(

Exception: <class 'ValueError'> -> invalid literal for int() with base 10: '1Va' -> model_type: variant
Exception: <class 'ValueError'> -> invalid literal for int() with base 10: '444Va' -> model_type: variant

[raphenya]

5a370a4