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libs/atlas/3.10.2 install error #166

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vlj91 opened this issue May 13, 2016 · 0 comments
Open

libs/atlas/3.10.2 install error #166

vlj91 opened this issue May 13, 2016 · 0 comments
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affects main bug

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@vlj91
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vlj91 commented May 13, 2016 •
edited by mjtko
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alces gridware install main/libs/atlas/3.10.2 cpuspeed=default lapackfile=default
Preparing to install main/libs/atlas/3.10.2
Installing main/libs/atlas/3.10.2

 > Preparing package sources
        Download --> atlas3.10.2.tar.bz2 ... OK
          Verify --> atlas3.10.2.tar.bz2 ... OK
        Download --> lapack-3.5.0.tgz    ... OK
          Verify --> lapack-3.5.0.tgz    ... OK

 > Preparing for installation
           Mkdir ... OK (/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5)
         Extract ... OK
    Dependencies ... OK

 > Proceeding with installation
         Compile ... ERROR: Package compilation failed

   Extract of compilation script error output:
   > make[2]: *** No rule to make target
`/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/..//CONFIG/ARCHS/U
NKNOWNx8664AVXMAC.tar.bz2', needed by
`/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/ARCHS/UNKNOWNx8664
AVXMAC'.  Stop.
   > ERROR 703 DURING CACHESIZE SEARCH!!.  CHECK INSTALL_LOG/Stage1.log FOR
DETAILS.
   > make[4]: [error_report] Error 4 (ignored)
   > Error report error_<ARCH>.tgz has been created in your top-level ATLAS
   > directory.  Be sure to include this file in any help request.
   > cat: ../../CONFIG/error.txt: No such file or directory
   > cat: ../../CONFIG/error.txt: No such file or directory
   > make[1]: *** [build] Error 255
   > make: *** [build] Error 2

   More information may be available in the log file:
     /var/log/gridware/builds/libs/atlas/3.10.2/gcc-4.8.5/make.20160513072549.log

cat /var/log/gridware/builds/libs/atlas/3.10.2/gcc-4.8.5/make.20160513072549.log
make -f Make.top build
make[1]: Entering directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build'
cd bin/ ; make xatlas_build
make[2]: Entering directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/bin'
/usr/bin/gcc -DL2SIZE=4194304 -I/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/include -I/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/..//include -I/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_Linux -DATL_ARCH_UNKNOWNx86 -DATL_CPUMHZ=2400 -DATL_AVXMAC -DATL_AVX -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -m64 -DATL_DYLIBS -DPentiumCPS=default -DATL_FULL_LAPACK -DATL_NCPU=8 -O -fomit-frame-pointer -fPIC -m64 -c /var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/..//bin/atlas_tee.c
/usr/bin/gcc -DL2SIZE=4194304 -I/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/include -I/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/..//include -I/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_Linux -DATL_ARCH_UNKNOWNx86 -DATL_CPUMHZ=2400 -DATL_AVXMAC -DATL_AVX -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -m64 -DATL_DYLIBS -DPentiumCPS=default -DATL_FULL_LAPACK -DATL_NCPU=8 -O -fomit-frame-pointer -fPIC -m64 -o xatlas_tee atlas_tee.o
/usr/bin/gcc -DL2SIZE=4194304 -I/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/include -I/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/..//include -I/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_Linux -DATL_ARCH_UNKNOWNx86 -DATL_CPUMHZ=2400 -DATL_AVXMAC -DATL_AVX -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -m64 -DATL_DYLIBS -DPentiumCPS=default -DATL_FULL_LAPACK -DATL_NCPU=8 -O -fomit-frame-pointer -fPIC -m64 -c /var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/..//bin/atlas_install.c
/usr/bin/gcc -DL2SIZE=4194304 -I/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/include -I/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/..//include -I/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_Linux -DATL_ARCH_UNKNOWNx86 -DATL_CPUMHZ=2400 -DATL_AVXMAC -DATL_AVX -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -m64 -DATL_DYLIBS -DPentiumCPS=default -DATL_FULL_LAPACK -DATL_NCPU=8 -O -fomit-frame-pointer -fPIC -m64 -o xatlas_build atlas_install.o
make[2]: Leaving directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/bin'
cd bin/ ; ./xatlas_build -1 0 -a 1 -l 1
make[2]: Entering directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/bin'
make[2]: *** No rule to make target `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/..//CONFIG/ARCHS/UNKNOWNx8664AVXMAC.tar.bz2', needed by `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/ARCHS/UNKNOWNx8664AVXMAC'.  Stop.
make[2]: Leaving directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/bin'
make[2]: Entering directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/bin'
cd /var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/src/auxil ; make -s ATL_buildinfo.o
make[3]: Entering directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/src/auxil'
make[4]: Entering directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/tune/sysinfo'
make[4]: Leaving directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/tune/sysinfo'
system: make print_F77 | fgrep -v make > /tmp/fileUWMikm
system: make print_F77FLAGS | fgrep -v make > /tmp/fileUWMikm
system: make print_ICC | fgrep -v make > /tmp/fileUWMikm
system: make print_ICCFLAGS | fgrep -v make > /tmp/fileUWMikm
system: make print_SMC | fgrep -v make > /tmp/fileUWMikm
system: make print_SMCFLAGS | fgrep -v make > /tmp/fileUWMikm
system: make print_DMC | fgrep -v make > /tmp/fileUWMikm
system: make print_DMCFLAGS | fgrep -v make > /tmp/fileUWMikm
system: make print_SKC | fgrep -v make > /tmp/fileUWMikm
system: make print_SKCFLAGS | fgrep -v make > /tmp/fileUWMikm
system: make print_DKC | fgrep -v make > /tmp/fileUWMikm
system: make print_DKCFLAGS | fgrep -v make > /tmp/fileUWMikm
system: make print_ARCHDEFS | fgrep -v make > /tmp/fileUWMikm
system: make print_F2CDEFS | fgrep -v make > /tmp/fileUWMikm
system: make print_INSTFLAGS | fgrep -v make > /tmp/fileUWMikm
system: make print_ARCH | fgrep -v make > /tmp/fileUWMikm
system: /usr/bin/gcc --version > /tmp/fileUWMikm
system: /usr/bin/gcc --version > /tmp/fileUWMikm
system: /usr/bin/gcc --version > /tmp/fileUWMikm
system: /usr/bin/gcc --version > /tmp/fileUWMikm
system: /usr/bin/gcc --version > /tmp/fileUWMikm
system: /usr/bin/gfortran --version > /tmp/fileUWMikm
system: uname -a > /tmp/fileUWMikm
system: whoami > /tmp/fileUWMikm
system: date > /tmp/fileUWMikm
make[3]: Leaving directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/src/auxil'
cd /var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/src/auxil ; make lib
make[3]: Entering directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/src/auxil'
cd /var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/bin ; make xatlas_waitfile
make[4]: Entering directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/bin'
/usr/bin/gcc -DL2SIZE=4194304 -I/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/include -I/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/..//include -I/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_Linux -DATL_ARCH_UNKNOWNx86 -DATL_CPUMHZ=2400 -DATL_AVXMAC -DATL_AVX -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -m64 -DATL_DYLIBS -DPentiumCPS=default -DATL_FULL_LAPACK -DATL_NCPU=8 -O -fomit-frame-pointer -fPIC -m64 -c /var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/..//bin/atlas_waitfile.c
cd /var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/tune/sysinfo ; make ATL_Xwalltime.o
make[5]: Entering directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/tune/sysinfo'
cp /var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/..//tune/sysinfo/ATL_walltime.c .
/usr/bin/gcc -c -DL2SIZE=4194304 -I/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/include -I/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/..//include -I/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_Linux -DATL_ARCH_UNKNOWNx86 -DATL_CPUMHZ=2400 -DATL_AVXMAC -DATL_AVX -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -m64 -DATL_DYLIBS -DPentiumCPS=default -DATL_FULL_LAPACK -DATL_NCPU=8 -O -fomit-frame-pointer -mavx2 -mfma -fPIC -m64 -fPIC ATL_walltime.c
<command-line>:0:12: error: expected expression before ‘default’
ATL_walltime.c:35:37: note: in expansion of macro ‘PentiumCPS’
    static const double CPS = 1.0 / (PentiumCPS*1.0E6);
                                     ^
make[5]: *** [ATL_walltime.o] Error 1
make[5]: Leaving directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/tune/sysinfo'
make[4]: *** [/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/tune/sysinfo/ATL_Xwalltime.o] Error 2
make[4]: Leaving directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/bin'
make[3]: *** [/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/bin/xatlas_waitfile] Error 2
make[3]: Leaving directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/src/auxil'
make[2]: *** [IStage1] Error 2
make[2]: Leaving directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/bin'
ERROR 703 DURING CACHESIZE SEARCH!!.  CHECK INSTALL_LOG/Stage1.log FOR DETAILS.
make[2]: Entering directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/bin'
cd /var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build ; make error_report
make[3]: Entering directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build'
make -f Make.top error_report
make[4]: Entering directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build'
uname -a 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
/usr/bin/gcc -v 2>&1  >> bin/INSTALL_LOG/ERROR.LOG
Using built-in specs.
COLLECT_GCC=/usr/bin/gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux
Thread model: posix
gcc version 4.8.5 20150623 (Red Hat 4.8.5-4) (GCC)
/usr/bin/gcc -V 2>&1  >> bin/INSTALL_LOG/ERROR.LOG
gcc: error: unrecognized command line option ‘-V’
gcc: fatal error: no input files
compilation terminated.
make[4]: [error_report] Error 4 (ignored)
/usr/bin/gcc --version 2>&1  >> bin/INSTALL_LOG/ERROR.LOG
tar cf error_UNKNOWNx8664AVXMAC.tar Make.inc bin/INSTALL_LOG/*
bzip2 error_UNKNOWNx8664AVXMAC.tar
make[4]: Leaving directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build'
make[3]: Leaving directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build'
make[2]: Leaving directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build/bin'
Error report error_<ARCH>.tgz has been created in your top-level ATLAS
directory.  Be sure to include this file in any help request.
cat: ../../CONFIG/error.txt: No such file or directory
cat: ../../CONFIG/error.txt: No such file or directory


BEGIN STAGE 1-0-0: SYSTEM PROBE/AUX COMPILE at 07:25
make[1]: *** [build] Error 255
make[1]: Leaving directory `/var/cache/gridware/src/libs/atlas/3.10.2/gcc-4.8.5/ATLAS/build'
make: *** [build] Error 2
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@mjtko @vlj91