diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index f29396d47e..229cf2ccd9 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -8,7 +8,7 @@ ci:
 
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v5.0.0
     hooks:
     - id: check-added-large-files
     - id: check-ast
diff --git a/pyproject.toml b/pyproject.toml
index 964f6399a1..75928de21e 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -116,10 +116,10 @@ graph-rag-falkor-db = [
 
 neo4j = [
     "docx2txt==0.8",
-    "llama-index==0.12.5",
-    "llama-index-graph-stores-neo4j==0.4.2",
-    "llama-index-core==0.12.5",
-    "llama-index-readers-web==0.3.3",
+    "llama-index==0.12.11",
+    "llama-index-graph-stores-neo4j==0.4.5",
+    "llama-index-core==0.12.11",
+    "llama-index-readers-web==0.3.4",
 ]
 
 # used for agentchat_realtime_swarm notebook and realtime agent twilio demo
@@ -195,12 +195,12 @@ docs = [
 ]
 
 types = [
-    "mypy==1.9.0",
+    "mypy==1.14.1",
     "pyautogen[test, jupyter-executor, interop]",
 ]
 
 lint = [
-    "ruff==0.9.1",
+    "ruff==0.9.2",
     "codespell==2.3.0",
     "pyupgrade-directories==0.3.0",
 ]
@@ -209,7 +209,7 @@ dev = [
     "pyautogen[lint,test,types,docs]",
     "pre-commit==4.0.1",
     "detect-secrets==1.5.0",
-    "uv==0.5.16",
+    "uv==0.5.21",
 ]
 
 
diff --git a/test/tools/test_function_utils.py b/test/tools/test_function_utils.py
index c614bf2d03..abf2a0ddbb 100644
--- a/test/tools/test_function_utils.py
+++ b/test/tools/test_function_utils.py
@@ -128,7 +128,7 @@ def f(a: Annotated[str, "Parameter a"], b=1, c: Annotated[float, "Parameter c"]
     typed_signature = get_typed_signature(f)
     param_annotations = get_param_annotations(typed_signature)
 
-    assert param_annotations == expected, param_annotations
+    assert param_annotations == expected, param_annotations  # type: ignore[comparison-overlap]
 
 
 def test_get_missing_annotations() -> None: