Recon ids as reaction names

[mihai-sysbio]

Description of the issue:

Some reactions (145) use the old Recon ids as reaction names.

Expected feature/value/output:

If the reaction names cannot be filled in from an appropriate source, they should be left empty.

Current feature/value/output:

Recon ids as reaction names.

Reproducing these results:

I hereby confirm that I have:

• Done this analysis in the main branch of the repository
• Checked that a similar issue does not exist already

[haowang-bioinfo]

Removing recon ids from reaction names (#334) is fine with me.

This issue is related to #181, which discussed about adding descriptive reaction names. What do you think? @mihai-sysbio

[mihai-sysbio]

Having the Recon ids as reaction names is easy to fix, and the improvement will be directly visible in Metabolic Atlas, so I suggest to keep the issues separate. I'll share my thoughts on #181 there.

[mihai-sysbio]

This issue appears to be resolved by #334 so I propose closing it, while leaving #181 open, since that's where the new relation names would one in.

[haowang-bioinfo]

sure, please go ahead