From f3f078952fac598c8d08ae15693592bbdb8c72e6 Mon Sep 17 00:00:00 2001 From: Hao Wang Date: Tue, 16 May 2023 14:49:53 +0200 Subject: [PATCH] fix: modify rxn and met IDs - These ids accidentally conflict with recent changes to HumanGEM --- data/fruitflySpecificMets.tsv | 62 +++++++++++++++++------------------ data/fruitflySpecificRxns.tsv | 62 +++++++++++++++++------------------ 2 files changed, 62 insertions(+), 62 deletions(-) diff --git a/data/fruitflySpecificMets.tsv b/data/fruitflySpecificMets.tsv index 42dc30b..6cfb93a 100644 --- a/data/fruitflySpecificMets.tsv +++ b/data/fruitflySpecificMets.tsv @@ -1,38 +1,38 @@ mets metNames metFormulas metCharges compartments metKEGGID metPubChemID metChEBIID metMetaCycID metMetaNetXID metsNoComp -"MAM20003c" "L-Allothreonine" "C4H9NO3" 0 "c" "C05519" "99289" "CHEBI:28718" "L-ALLO-THREONINE" "MNXM2125" "MAM20003" +"MAM15003c" "L-Allothreonine" "C4H9NO3" 0 "c" "C05519" "99289" "CHEBI:28718" "L-ALLO-THREONINE" "MNXM2125" "MAM15003" "MAM01104x" "5-hydroxyisourate" "C5H4N4O4" 0 "x" "C11821" "250388" "CHEBI:250388" "5-HYDROXYISOURATE" "MNXM1137" "MAM01104" "MAM10018x" "5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate" "C5H5N4O5" -1 "x" "C12248" "443736" "CHEBI:58639" "CPD-5821" "MNXM1805" "MAM10018" "MAM10018c" "5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate" "C5H5N4O5" -1 "c" "C12248" "443736" "CHEBI:58639" "CPD-5821" "MNXM1805" "MAM10018" -"MAM20005x" "1,3,7-Trimethyluric acid" "C8H10N4O3" 0 "x" "C16361" "47205669" "CHEBI:691622" "CPD-12480" "MNXM2761" "MAM20005" -"MAM20006x" "3,6,8-Trimethylallantoin" "C7H12N4O3" 0 "x" "C16362" "47205670" "CHEBI:80471" "CPD-12485" "MNXM6778" "MAM20006" -"MAM20010c" "pseudouridine" "C9H12N2O6" 0 "c" "C02067" "15047" "CHEBI:17802" "CPD-497" "MNXM1094063;MNXM4794" "MAM20010" +"MAM15005x" "1,3,7-Trimethyluric acid" "C8H10N4O3" 0 "x" "C16361" "47205669" "CHEBI:691622" "CPD-12480" "MNXM2761" "MAM15005" +"MAM15006x" "3,6,8-Trimethylallantoin" "C7H12N4O3" 0 "x" "C16362" "47205670" "CHEBI:80471" "CPD-12485" "MNXM6778" "MAM15006" +"MAM15010c" "pseudouridine" "C9H12N2O6" 0 "c" "C02067" "15047" "CHEBI:17802" "CPD-497" "MNXM1094063;MNXM4794" "MAM15010" "MAM02807c" "pseudouridine-5-phosphate" "C9H11N2O9P" -2 "c" "C01168" "25245232" "CHEBI:18116" "PSEUDOURIDINE-5-P" "MNXM2276" "MAM02807" -"MAM20027c" "L-arginine-phosphate" "C6H14N4O5P" -1 "c" "C05945" "92150" "CHEBI:58477" "L-ARGININE-P" "MNXM3663" "MAM20027" -"MAM20028r" "2-2-N-linked-Glycan" "C54H88N6O37" 0 "r" "" "25200901" "CHEBI:60651" "2-2-N-linked-Glycan" "MNXM146421" "MAM20028" -"MAM20029r" "N4-N-ACETYL-BETA-D-GLUCOSAMINYL-F" "C60H98N6O41" 0 "r" "" "25203205" "CHEBI:137182" "N4-N-ACETYL-BETA-D-GLUCOSAMINYL-F" "MNXM148917" "MAM20029" +"MAM15027c" "L-arginine-phosphate" "C6H14N4O5P" -1 "c" "C05945" "92150" "CHEBI:58477" "L-ARGININE-P" "MNXM3663" "MAM15027" +"MAM15028r" "2-2-N-linked-Glycan" "C54H88N6O37" 0 "r" "" "25200901" "CHEBI:60651" "2-2-N-linked-Glycan" "MNXM146421" "MAM15028" +"MAM15029r" "N4-N-ACETYL-BETA-D-GLUCOSAMINYL-F" "C60H98N6O41" 0 "r" "" "25203205" "CHEBI:137182" "N4-N-ACETYL-BETA-D-GLUCOSAMINYL-F" "MNXM148917" "MAM15029" "MAM01948r" "GDP" "C10H12N5O11P2" -3 "r" "C00035" "" "CHEBI:17552" "" "MNXM30" "MAM01948" "MAM01950r" "GDP-L-fucose" "C16H23N5O15P2" -2 "r" "C00325" "" "CHEBI:17009" "" "MNXM193" "MAM01950" -"MAM20030c" "ecdysone" "C27H44O6" 0 "c" "C00477" "19212" "CHEBI:16688" "ECDYSONE" "MNXM727021;MNXM727022" "MAM20030" -"MAM20031c" "3-dehydroecdysone" "C27H42O6" 0 "c" "C02513" "5460083" "CHEBI:17058" "CPD-331" "MNXM819815;MNXM2610" "MAM20031" -"MAM20032c" "20-hydroxyecdysone" "C27H44O7" 0 "c" "C02633" "5459840" "CHEBI:16587" "CPD-276" "MNXM733384" "MAM20032" -"MAM20033c" "2,22,25-trideoxyecdysone" "C27H44O3" 0 "c" "C16493" "15942885" "CHEBI:19290" "CPD-15499" "MNXM6663" "MAM20033" -"MAM20034c" "2,22-dideoxyecdysone" "C27H44O4" 0 "c" "C16494" "14017685" "CHEBI:80530" "CPD-15498" "MNXM6852" "MAM20034" -"MAM20035c" "2,22-dideoxyecdysone" "C27H44O4" 0 "c" "C16494" "14017685" "CHEBI:80530" "CPD-15498" "MNXM6852" "MAM20035" -"MAM20036c" "2-deoxyecdysone" "C27H44O5" 0 "c" "C16495" "13939876" "CHEBI:19566" "CPD-15497" "MNXM739340;MNXM739339" "MAM20036" -"MAM20037c" "3-dehydro-2,22,25-deoxyecdysone" "C27H42O3" 0 "c" "C16509" "15081546" "CHEBI:80541" "" "MNXM5425" "MAM20037" -"MAM20038c" "3-dehydro-2,22-dideoxyecdysone" "C27H42O4" 0 "c" "C16498" "23724770" "CHEBI:80533" "" "MNXM6664" "MAM20038" -"MAM20039c" "3-dehydro-2-deoxyecdysone" "C27H42O5" 0 "c" "C16497" "15251159" "CHEBI:80532" "CPD-15506" "MNXM6790" "MAM20039" -"MAM20040c" "3-dehydroecdysone" "C27H42O6" 0 "c" "C02513" "5460083" "CHEBI:17058" "CPD-331" "MNXM819815;MNXM2610" "MAM20040" -"MAM20041c" "20,26-dihydroxyecdysone" "C27H44O8" 0 "c" "C16500" "21123946" "CHEBI:19793" "CPD-15601" "MNXM741791;MNXM741792" "MAM20041" -"MAM20042c" "trans-trans-farnesyl-phosphate" "C15H25O4P" -2 "c" "C20121" "46926298" "CHEBI:88226" "CPD-12587" "MNXM4974" "MAM20042" -"MAM20043c" "2-trans-S-6-trans-farnesol" "C15H26O" 0 "c" "C01126" "445070" "CHEBI:16619" "2-TRANS6-TRANS-FARNESOL" "MNXM727075" "MAM20043" -"MAM20044c" "2-trans-6-trans-farnesal" "C15H24O" 0 "c" "C03461" "5280598" "CHEBI:15894" "2-TRANS6-TRANS-FARNESAL" "MNXM1959" "MAM20044" -"MAM20045c" "alpha-D-glucose 6-phosphate" "C6H11O9P" -2 "c" "C00668" "439284" "CHEBI:17665" "ALPHA-GLC-6-P" "MNXM729990" "MAM20045" -"MAM20046c" "alpha-alpha-trehalose-6-phosphate" "C12H21O14P" -2 "c" "C00689" "122336" "CHEBI:18283" "TREHALOSE-6P" "MNXM448" "MAM20046" -"MAM20047c" "secologanin" "C17H24O10" 0 "c" "C01852" "161276" "CHEBI:18002" "SECOLOGANIN-CPD" "MNXM823" "MAM20047" -"MAM20048c" "3-alphaS-strictosidine" "C27H35N2O9" 1 "c" "C03470" "44123291" "CHEBI:17559" "STRICTOSIDINE" "MNXM728173" "MAM20048" -"MAM20049c" "pyrimidodiazepine" "C9H11N5O2" 0 "c" "C02587" "135887869" "CHEBI:27114" "A-PYRIMIDODIAZEPINE" "MNXM732507" "MAM20049" -"MAM20050c" "Juvenile hormone III" "C16H26O3" 0 "c" "C09694" "5281523" "CHEBI:27493" "CPD-8838" "MNXM2685" "MAM20050" -"MAM20051c" "Juvenile hormone III acid" "C15H23O3" -1 "c" "C16504" "23724771" "CHEBI:83274" "CPD-12750" "MNXM3627" "MAM20051" -"MAM20052c" "farnesoic acid" "C15H24O2" 0 "c" "C16502" "21895630" "CHEBI:83276" "CPD-12585" "MNXM735428" "MAM20052" -"MAM20053c" "methyl farnesoate" "C16H26O2" 0 "c" "C16503" "5275508" "CHEBI:80535" "CPD-12586" "MNXM5369" "MAM20053" +"MAM15030c" "ecdysone" "C27H44O6" 0 "c" "C00477" "19212" "CHEBI:16688" "ECDYSONE" "MNXM727021;MNXM727022" "MAM15030" +"MAM15031c" "3-dehydroecdysone" "C27H42O6" 0 "c" "C02513" "5460083" "CHEBI:17058" "CPD-331" "MNXM819815;MNXM2610" "MAM15031" +"MAM15032c" "20-hydroxyecdysone" "C27H44O7" 0 "c" "C02633" "5459840" "CHEBI:16587" "CPD-276" "MNXM733384" "MAM15032" +"MAM15033c" "2,22,25-trideoxyecdysone" "C27H44O3" 0 "c" "C16493" "15942885" "CHEBI:19290" "CPD-15499" "MNXM6663" "MAM15033" +"MAM15034c" "2,22-dideoxyecdysone" "C27H44O4" 0 "c" "C16494" "14017685" "CHEBI:80530" "CPD-15498" "MNXM6852" "MAM15034" +"MAM15035c" "2,22-dideoxyecdysone" "C27H44O4" 0 "c" "C16494" "14017685" "CHEBI:80530" "CPD-15498" "MNXM6852" "MAM15035" +"MAM15036c" "2-deoxyecdysone" "C27H44O5" 0 "c" "C16495" "13939876" "CHEBI:19566" "CPD-15497" "MNXM739340;MNXM739339" "MAM15036" +"MAM15037c" "3-dehydro-2,22,25-deoxyecdysone" "C27H42O3" 0 "c" "C16509" "15081546" "CHEBI:80541" "" "MNXM5425" "MAM15037" +"MAM15038c" "3-dehydro-2,22-dideoxyecdysone" "C27H42O4" 0 "c" "C16498" "23724770" "CHEBI:80533" "" "MNXM6664" "MAM15038" +"MAM15039c" "3-dehydro-2-deoxyecdysone" "C27H42O5" 0 "c" "C16497" "15251159" "CHEBI:80532" "CPD-15506" "MNXM6790" "MAM15039" +"MAM15040c" "3-dehydroecdysone" "C27H42O6" 0 "c" "C02513" "5460083" "CHEBI:17058" "CPD-331" "MNXM819815;MNXM2610" "MAM15040" +"MAM15041c" "20,26-dihydroxyecdysone" "C27H44O8" 0 "c" "C16500" "21123946" "CHEBI:19793" "CPD-15601" "MNXM741791;MNXM741792" "MAM15041" +"MAM15042c" "trans-trans-farnesyl-phosphate" "C15H25O4P" -2 "c" "C20121" "46926298" "CHEBI:88226" "CPD-12587" "MNXM4974" "MAM15042" +"MAM15043c" "2-trans-S-6-trans-farnesol" "C15H26O" 0 "c" "C01126" "445070" "CHEBI:16619" "2-TRANS6-TRANS-FARNESOL" "MNXM727075" "MAM15043" +"MAM15044c" "2-trans-6-trans-farnesal" "C15H24O" 0 "c" "C03461" "5280598" "CHEBI:15894" "2-TRANS6-TRANS-FARNESAL" "MNXM1959" "MAM15044" +"MAM15045c" "alpha-D-glucose 6-phosphate" "C6H11O9P" -2 "c" "C00668" "439284" "CHEBI:17665" "ALPHA-GLC-6-P" "MNXM729990" "MAM15045" +"MAM15046c" "alpha-alpha-trehalose-6-phosphate" "C12H21O14P" -2 "c" "C00689" "122336" "CHEBI:18283" "TREHALOSE-6P" "MNXM448" "MAM15046" +"MAM15047c" "secologanin" "C17H24O10" 0 "c" "C01852" "161276" "CHEBI:18002" "SECOLOGANIN-CPD" "MNXM823" "MAM15047" +"MAM15048c" "3-alphaS-strictosidine" "C27H35N2O9" 1 "c" "C03470" "44123291" "CHEBI:17559" "STRICTOSIDINE" "MNXM728173" "MAM15048" +"MAM15049c" "pyrimidodiazepine" "C9H11N5O2" 0 "c" "C02587" "135887869" "CHEBI:27114" "A-PYRIMIDODIAZEPINE" "MNXM732507" "MAM15049" +"MAM15050c" "Juvenile hormone III" "C16H26O3" 0 "c" "C09694" "5281523" "CHEBI:27493" "CPD-8838" "MNXM2685" "MAM15050" +"MAM15051c" "Juvenile hormone III acid" "C15H23O3" -1 "c" "C16504" "23724771" "CHEBI:83274" "CPD-12750" "MNXM3627" "MAM15051" +"MAM15052c" "farnesoic acid" "C15H24O2" 0 "c" "C16502" "21895630" "CHEBI:83276" "CPD-12585" "MNXM735428" "MAM15052" +"MAM15053c" "methyl farnesoate" "C16H26O2" 0 "c" "C16503" "5275508" "CHEBI:80535" "CPD-12586" "MNXM5369" "MAM15053" diff --git a/data/fruitflySpecificRxns.tsv b/data/fruitflySpecificRxns.tsv index 1428be5..de5fefe 100644 --- a/data/fruitflySpecificRxns.tsv +++ b/data/fruitflySpecificRxns.tsv @@ -1,32 +1,32 @@ rxns equations ub lb eccodes subSystems grRules rxnReferences rxnConfidenceScores rxnKEGGID rxnMetaCycID rxnREACTOMEID rxnMetaNetXID -"MAR20001" "NAD+[m] + threonine[m] => NADH[m] + H+[m] + L-2-amino-3-oxobutanoic acid[m]" 1000 0 "1.1.1.103" "Glycine, serine and threonine metabolism" "CG5955" "PMID:26492815" 4 "R01465" "THREODEHYD-RXN" "R-HSA-6798667" "MNXR103402" -"MAR20003" "L-Allothreonine[c] <=> glycine[c] + acetaldehyde[c]" 1000 -1000 "4.1.2.48;4.1.2.49" "Glycine, serine and threonine metabolism" "CG10184" "" 2 "R06171" "LTAA-RXN" "" "MNXR104834" -"MAR20004" "H2O[x] + 5-hydroxyisourate[x] => 5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[x] + H+[x]" 1000 0 "3.5.2.17" "Purine metabolism" "CG30016" "PMID:17085964" 4 "R06601" "3.5.2.17-RXN" "" "MNXR100652" -"MAR20005" "5-hydroxyisourate[x] <=> 5-hydroxyisourate[c]" 1000 -1000 "" "Transport" "" "" 0 "" "" "" "" -"MAR20006" "5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[x] <=> 5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[c]" 1000 -1000 "" "Transport" "" "" 0 "" "" "" "" -"MAR20007" "2 H2O[x] + O2[x] + 1,3,7-Trimethyluric acid[x] <=> CO2[x] + H2O2[x] + 3,6,8-Trimethylallantoin[x]" 1000 -1000 "1.7.3.3" "Caffeine metabolism" "Uro" "" 2 "R07981" "" "" "MNXR111564" -"MAR20013" "ATP[c] + pseudouridine[c] <=> ADP[c] + pseudouridine-5-phosphate[c] + H+[c]" 1000 -1000 "2.7.1.83" "Pyrimidine metabolism" "CG2794" "" 2 "R03315" "PSEUDOURIDINE-KINASE-RXN" "" "MNXR108088;MNXR162394" -"MAR20014" "NADH[c] + O2[c] + H+[c] + cholesterol[c] => 2 H2O[c] + NAD+[c] + provitamin D3[c]" 1000 0 "1.14.19.21" "Hormone biosynthesis" "nvd" "" 2 "R11007" "RXN-16379" "" "MNXR120043" -"MAR20015" "NADPH[c] + O2[c] + H+[c] + cholesterol[c] => 2 H2O[c] + NADP+[c] + provitamin D3[c]" 1000 0 "1.14.19.21" "Hormone biosynthesis" "nvd" "" 2 "R11008" "RXN-16379" "" "MNXR120043" -"MAR20017" "NADH[c] + AKG[c] + glutamine[c] + H+[c] => NAD+[c] + 2 glutamate[c]" 1000 0 "14.1.14" "Alanine, aspartate and glutamate metabolism" "GS" "" 2 "R00093" "GLUTAMATE-SYNTHASE-NADH-RXN" "" "MNXR100289" -"MAR20035" "ATP[c] + arginine[c] <=> ADP[c] + L-arginine-phosphate[c] + H+[c]" 1000 -1000 "2.7.3.3" "Arginine and proline metabolism" "Argk or AK-3 or CG5144" "" 2 "R00554" "ARGININE-KINASE-RXN" "" "MNXR95943" -"MAR20036" "2-2-N-linked-Glycan[r] + GDP-L-fucose[r] => N4-N-ACETYL-BETA-D-GLUCOSAMINYL-F[r] + GDP[r] + H+[r]" 1000 0 "2.4.1.214" "N-glycan metabolism" "FucTA" "" 2 "" "2.4.1.214-RXN" "" "MNXR143743" -"MAR20037" "O2[c] + ecdysone[c] => H2O2[c] + 3-dehydroecdysone[c]" 1000 0 "1.1.3.16" "Hormone biosynthesis" "Eo" "" 2 "R02373" "ECDYSONE-OXIDASE-RXN" "" "MNXR107471" -"MAR20038" "O2[c] + ecdysone[c] + 2 H+[c] => H2O[c] + 20-hydroxyecdysone[c]" 1000 0 "1.14.99.22" "Hormone biosynthesis" "shd" "" 2 "R02374" "ECDYSONE-20-MONOOXYGENASE-RXN" "" "MNXR107472" -"MAR20039" "provitamin D3[c] => 3-dehydro-2,22,25-deoxyecdysone[c]" 1000 0 "" "Hormone biosynthesis" "spo or spok" "" 2 "R08132" "" "" "MNXR111710" -"MAR20040" "2,22,25-trideoxyecdysone[c] + O2[c] => H2O[c] + 2,22-dideoxyecdysone[c]" 1000 0 "1.14.14.-" "Hormone biosynthesis" "phm" "" 2 "R08133" "RXN-14677" "" "MNXR111711;MNXR118848" -"MAR20041" "2,22-dideoxyecdysone[c] + O2[c] + 2 H+[c] => 2-deoxyecdysone[c] + H2O[c]" 1000 0 "" "Hormone biosynthesis" "dib" "" 2 "R08134" "RXN-14678" "" "MNXR111712;MNXR118849" -"MAR20042" "2-deoxyecdysone[c] + O2[c] + 2 H+[c] => ecdysone[c] + H2O[c]" 1000 0 "" "Hormone biosynthesis" "sad" "" 2 "R08135" "RXN-14679" "" "MNXR111713;MNXR118850" -"MAR20043" "3-dehydro-2,22,25-deoxyecdysone[c] + O2[c] => 3-dehydro-2,22-dideoxyecdysone[c] + H2O[c]" 1000 0 "" "Hormone biosynthesis" "phm" "" 2 "R08136" "RXN-14680" "" "MNXR111714;MNXR118851" -"MAR20044" "3-dehydro-2,22-dideoxyecdysone[c] + O2[c] + 2 H+[c] => 3-dehydro-2-deoxyecdysone[c] + H2O[c]" 1000 0 "" "Hormone biosynthesis" "dib[m]" "" 2 "R08138" "RXN-14681" "" "MNXR111716;MNXR118852" -"MAR20045" "3-dehydro-2-deoxyecdysone[c] + O2[c] + 2 H+[c] => 3-dehydroecdysone[c] + H2O[c]" 1000 0 "1.14.15.-" "Hormone biosynthesis" "sad" "" 2 "R08139" "RXN-14682" "" "MNXR111717;MNXR118853" -"MAR20046" "20-hydroxyecdysone[c] => 20,26-dihydroxyecdysone[c]" 1000 0 "" "Hormone biosynthesis" "Cyp18a1" "" 2 "R08143" "" "" "MNXR150145" -"MAR20047" "H2O[c] + trans-trans-farnesyl-phosphate[c] => Pi[c] + 2-trans-S-6-trans-farnesol[c]" 1000 0 "3.1.3.-" "Hormone biosynthesis" "CG10352 or CG15739 or CG2680" "" 2 "R08144" "RXN-11777" "" "MNXR111722" -"MAR20048" "NADP+[c] + 2-trans-S-6-trans-farnesol[c] => NADPH[c] + H+[c] + 2-trans-6-trans-farnesal[c]" 1000 0 "1.1.1.216" "Hormone biosynthesis" "CG7090 or antdh or FOHSDR or CG9150 or CG9360" "" 2 "R03264" "FARNESOL-DEHYDROGENASE-RXN" "" "MNXR108058" -"MAR20049" "H2O[c] + Juvenile hormone III[c] => methanol[c] + Juvenile hormone III acid[c] + H+[c]" 1000 0 "3.1.1.59" "Hormone biosynthesis" "Jhe" "" 2 "R08149" "JUVENILE-HORMONE-ESTERASE-RXN" "" "MNXR111727" -"MAR20050" "SAM[c] + Juvenile hormone III acid[c] => SAH[c] + Juvenile hormone III[c]" 1000 0 "2.1.1.325" "Hormone biosynthesis" "jhamt" "" 2 "R08151" "RXN-11771" "" "MNXR111729" -"MAR20051" "SAM[c] + farnesoic acid[c] => SAH[c] + methyl farnesoate[c]" 1000 0 "2.1.1.325" "Hormone biosynthesis" "jhamt" "" 2 "R08147" "RXN-11587" "" "MNXR111725" -"MAR20052" "UDP-glucose[c] + alpha-D-glucose 6-phosphate[c] <=> UDP[c] + alpha-alpha-trehalose-6-phosphate[c]" 1000 0 "2.4.1.15" "Starch and sucrose metabolism" "Tps1" "" 2 "R02737" "" "" "MNXR152261" -"MAR20053" "tryptamine[c] + secologanin[c] => H2O[c] + 3-alphaS-strictosidine[c]" 1000 0 "4.3.3.2" "Indole alkaloid biosynthesis" "Ssl2" "" 2 "R03738" "STRICTOSIDINE-SYNTHASE-RXN" "" "MNXR108386" -"MAR20054" "H2O[c] + O2[c] + L-dopa[c] => CO2[c] + NH3[c] + H2O2[c] + 3,4-dihydroxyphenylacetaldehyde[c]" 1000 0 "4.1.1.107" "Tyrosine metabolism" "amd" "" 2 "R11916" "RXN-19275" "" "MNXR170522" -"MAR20055" "2 GSH[c] + 6-pyruvoyltetrahydropterin[c] => H2O[c] + GSSG[c] + pyrimidodiazepine[c]" 1000 0 "1.5.4.1" "Glutathione metabolism" "se" "" 2 "R03984" "1.5.4.1-RXN" "" "MNXR152018" +"MAR15001" "NAD+[m] + threonine[m] => NADH[m] + H+[m] + L-2-amino-3-oxobutanoic acid[m]" 1000 0 "1.1.1.103" "Glycine, serine and threonine metabolism" "CG5955" "PMID:26492815" 4 "R01465" "THREODEHYD-RXN" "R-HSA-6798667" "MNXR103402" +"MAR15003" "L-Allothreonine[c] <=> glycine[c] + acetaldehyde[c]" 1000 -1000 "4.1.2.48;4.1.2.49" "Glycine, serine and threonine metabolism" "CG10184" "" 2 "R06171" "LTAA-RXN" "" "MNXR104834" +"MAR15004" "H2O[x] + 5-hydroxyisourate[x] => 5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[x] + H+[x]" 1000 0 "3.5.2.17" "Purine metabolism" "CG30016" "PMID:17085964" 4 "R06601" "3.5.2.17-RXN" "" "MNXR100652" +"MAR15005" "5-hydroxyisourate[x] <=> 5-hydroxyisourate[c]" 1000 -1000 "" "Transport" "" "" 0 "" "" "" "" +"MAR15006" "5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[x] <=> 5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate[c]" 1000 -1000 "" "Transport" "" "" 0 "" "" "" "" +"MAR15007" "2 H2O[x] + O2[x] + 1,3,7-Trimethyluric acid[x] <=> CO2[x] + H2O2[x] + 3,6,8-Trimethylallantoin[x]" 1000 -1000 "1.7.3.3" "Caffeine metabolism" "Uro" "" 2 "R07981" "" "" "MNXR111564" +"MAR15013" "ATP[c] + pseudouridine[c] <=> ADP[c] + pseudouridine-5-phosphate[c] + H+[c]" 1000 -1000 "2.7.1.83" "Pyrimidine metabolism" "CG2794" "" 2 "R03315" "PSEUDOURIDINE-KINASE-RXN" "" "MNXR108088;MNXR162394" +"MAR15014" "NADH[c] + O2[c] + H+[c] + cholesterol[c] => 2 H2O[c] + NAD+[c] + provitamin D3[c]" 1000 0 "1.14.19.21" "Hormone biosynthesis" "nvd" "" 2 "R11007" "RXN-16379" "" "MNXR120043" +"MAR15015" "NADPH[c] + O2[c] + H+[c] + cholesterol[c] => 2 H2O[c] + NADP+[c] + provitamin D3[c]" 1000 0 "1.14.19.21" "Hormone biosynthesis" "nvd" "" 2 "R11008" "RXN-16379" "" "MNXR120043" +"MAR15017" "NADH[c] + AKG[c] + glutamine[c] + H+[c] => NAD+[c] + 2 glutamate[c]" 1000 0 "14.1.14" "Alanine, aspartate and glutamate metabolism" "GS" "" 2 "R00093" "GLUTAMATE-SYNTHASE-NADH-RXN" "" "MNXR100289" +"MAR15035" "ATP[c] + arginine[c] <=> ADP[c] + L-arginine-phosphate[c] + H+[c]" 1000 -1000 "2.7.3.3" "Arginine and proline metabolism" "Argk or AK-3 or CG5144" "" 2 "R00554" "ARGININE-KINASE-RXN" "" "MNXR95943" +"MAR15036" "2-2-N-linked-Glycan[r] + GDP-L-fucose[r] => N4-N-ACETYL-BETA-D-GLUCOSAMINYL-F[r] + GDP[r] + H+[r]" 1000 0 "2.4.1.214" "N-glycan metabolism" "FucTA" "" 2 "" "2.4.1.214-RXN" "" "MNXR143743" +"MAR15037" "O2[c] + ecdysone[c] => H2O2[c] + 3-dehydroecdysone[c]" 1000 0 "1.1.3.16" "Hormone biosynthesis" "Eo" "" 2 "R02373" "ECDYSONE-OXIDASE-RXN" "" "MNXR107471" +"MAR15038" "O2[c] + ecdysone[c] + 2 H+[c] => H2O[c] + 20-hydroxyecdysone[c]" 1000 0 "1.14.99.22" "Hormone biosynthesis" "shd" "" 2 "R02374" "ECDYSONE-20-MONOOXYGENASE-RXN" "" "MNXR107472" +"MAR15039" "provitamin D3[c] => 3-dehydro-2,22,25-deoxyecdysone[c]" 1000 0 "" "Hormone biosynthesis" "spo or spok" "" 2 "R08132" "" "" "MNXR111710" +"MAR15040" "2,22,25-trideoxyecdysone[c] + O2[c] => H2O[c] + 2,22-dideoxyecdysone[c]" 1000 0 "1.14.14.-" "Hormone biosynthesis" "phm" "" 2 "R08133" "RXN-14677" "" "MNXR111711;MNXR118848" +"MAR15041" "2,22-dideoxyecdysone[c] + O2[c] + 2 H+[c] => 2-deoxyecdysone[c] + H2O[c]" 1000 0 "" "Hormone biosynthesis" "dib" "" 2 "R08134" "RXN-14678" "" "MNXR111712;MNXR118849" +"MAR15042" "2-deoxyecdysone[c] + O2[c] + 2 H+[c] => ecdysone[c] + H2O[c]" 1000 0 "" "Hormone biosynthesis" "sad" "" 2 "R08135" "RXN-14679" "" "MNXR111713;MNXR118850" +"MAR15043" "3-dehydro-2,22,25-deoxyecdysone[c] + O2[c] => 3-dehydro-2,22-dideoxyecdysone[c] + H2O[c]" 1000 0 "" "Hormone biosynthesis" "phm" "" 2 "R08136" "RXN-14680" "" "MNXR111714;MNXR118851" +"MAR15044" "3-dehydro-2,22-dideoxyecdysone[c] + O2[c] + 2 H+[c] => 3-dehydro-2-deoxyecdysone[c] + H2O[c]" 1000 0 "" "Hormone biosynthesis" "dib[m]" "" 2 "R08138" "RXN-14681" "" "MNXR111716;MNXR118852" +"MAR15045" "3-dehydro-2-deoxyecdysone[c] + O2[c] + 2 H+[c] => 3-dehydroecdysone[c] + H2O[c]" 1000 0 "1.14.15.-" "Hormone biosynthesis" "sad" "" 2 "R08139" "RXN-14682" "" "MNXR111717;MNXR118853" +"MAR15046" "20-hydroxyecdysone[c] => 20,26-dihydroxyecdysone[c]" 1000 0 "" "Hormone biosynthesis" "Cyp18a1" "" 2 "R08143" "" "" "MNXR150145" +"MAR15047" "H2O[c] + trans-trans-farnesyl-phosphate[c] => Pi[c] + 2-trans-S-6-trans-farnesol[c]" 1000 0 "3.1.3.-" "Hormone biosynthesis" "CG10352 or CG15739 or CG2680" "" 2 "R08144" "RXN-11777" "" "MNXR111722" +"MAR15048" "NADP+[c] + 2-trans-S-6-trans-farnesol[c] => NADPH[c] + H+[c] + 2-trans-6-trans-farnesal[c]" 1000 0 "1.1.1.216" "Hormone biosynthesis" "CG7090 or antdh or FOHSDR or CG9150 or CG9360" "" 2 "R03264" "FARNESOL-DEHYDROGENASE-RXN" "" "MNXR108058" +"MAR15049" "H2O[c] + Juvenile hormone III[c] => methanol[c] + Juvenile hormone III acid[c] + H+[c]" 1000 0 "3.1.1.59" "Hormone biosynthesis" "Jhe" "" 2 "R08149" "JUVENILE-HORMONE-ESTERASE-RXN" "" "MNXR111727" +"MAR15050" "SAM[c] + Juvenile hormone III acid[c] => SAH[c] + Juvenile hormone III[c]" 1000 0 "2.1.1.325" "Hormone biosynthesis" "jhamt" "" 2 "R08151" "RXN-11771" "" "MNXR111729" +"MAR15051" "SAM[c] + farnesoic acid[c] => SAH[c] + methyl farnesoate[c]" 1000 0 "2.1.1.325" "Hormone biosynthesis" "jhamt" "" 2 "R08147" "RXN-11587" "" "MNXR111725" +"MAR15052" "UDP-glucose[c] + alpha-D-glucose 6-phosphate[c] <=> UDP[c] + alpha-alpha-trehalose-6-phosphate[c]" 1000 0 "2.4.1.15" "Starch and sucrose metabolism" "Tps1" "" 2 "R02737" "" "" "MNXR152261" +"MAR15053" "tryptamine[c] + secologanin[c] => H2O[c] + 3-alphaS-strictosidine[c]" 1000 0 "4.3.3.2" "Indole alkaloid biosynthesis" "Ssl2" "" 2 "R03738" "STRICTOSIDINE-SYNTHASE-RXN" "" "MNXR108386" +"MAR15054" "H2O[c] + O2[c] + L-dopa[c] => CO2[c] + NH3[c] + H2O2[c] + 3,4-dihydroxyphenylacetaldehyde[c]" 1000 0 "4.1.1.107" "Tyrosine metabolism" "amd" "" 2 "R11916" "RXN-19275" "" "MNXR170522" +"MAR15055" "2 GSH[c] + 6-pyruvoyltetrahydropterin[c] => H2O[c] + GSSG[c] + pyrimidodiazepine[c]" 1000 0 "1.5.4.1" "Glutathione metabolism" "se" "" 2 "R03984" "1.5.4.1-RXN" "" "MNXR152018"