From 60fef48b7f6e2c40e0b48be61218004eeefc5c52 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Sebastian=20Miclu=C8=9Ba-C=C3=A2mpeanu?=
 <m.c.sebastian95@gmail.com>
Date: Mon, 9 Aug 2021 16:17:32 +0300
Subject: [PATCH 1/8] Add warning on empty `CITATION.bib` files

---
 src/citations.jl | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/src/citations.jl b/src/citations.jl
index 63658c9..41e28f3 100644
--- a/src/citations.jl
+++ b/src/citations.jl
@@ -17,7 +17,12 @@ function get_citation(pkg; badge=false)
     if !isnothing(bib_path)
         @debug "Reading CITATION.bib for $(pkg.name)"
         try
-            import_bibtex(bib_path)
+            bib = import_bibtex(bib_path)
+            if isempty(bib)
+                @warn "The CITATION.bib file for $(pkg.name) is empty."
+            end
+
+            bib
         catch e
             @warn "There was an error reading the CITATION.bib file for $(pkg.name)" exception=e
         end

From 4c8e6a7eea81cfc45078d5840e06c36773537ade Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Sebastian=20Miclu=C8=9Ba-C=C3=A2mpeanu?=
 <m.c.sebastian95@gmail.com>
Date: Mon, 9 Aug 2021 16:18:23 +0300
Subject: [PATCH 2/8] Don't error if there is no citation for a package

---
 src/tool_report.jl | 1 +
 1 file changed, 1 insertion(+)

diff --git a/src/tool_report.jl b/src/tool_report.jl
index 152f3d0..949f09f 100644
--- a/src/tool_report.jl
+++ b/src/tool_report.jl
@@ -1,4 +1,5 @@
 function cite_package(name, bib; cite_commands)
+    isempty(bib) && return ""
     if length(bib) == 1
         key = only(keys(bib))
         cmd = get(cite_commands, name, DEFAULT_CITE)

From 4825b93fce5a09a6c234e35bd68da892a722f823 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Sebastian=20Miclu=C8=9Ba-C=C3=A2mpeanu?=
 <m.c.sebastian95@gmail.com>
Date: Wed, 11 Aug 2021 11:15:10 +0300
Subject: [PATCH 3/8] Update Symbolics test env

---
 test/test_env/Manifest.toml | 192 +++++++++++++++---------------------
 1 file changed, 81 insertions(+), 111 deletions(-)

diff --git a/test/test_env/Manifest.toml b/test/test_env/Manifest.toml
index 6dcc0de..2eff419 100644
--- a/test/test_env/Manifest.toml
+++ b/test/test_env/Manifest.toml
@@ -1,11 +1,5 @@
 # This file is machine-generated - editing it directly is not advised
 
-[[AbstractAlgebra]]
-deps = ["InteractiveUtils", "LinearAlgebra", "Markdown", "Random", "RandomExtensions", "SparseArrays", "Test"]
-git-tree-sha1 = "452f5cdc30c10a372d87cf60da4ead7c8cfc4548"
-uuid = "c3fe647b-3220-5bb0-a1ea-a7954cac585d"
-version = "0.16.0"
-
 [[AbstractTrees]]
 git-tree-sha1 = "03e0550477d86222521d254b741d470ba17ea0b5"
 uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
@@ -16,9 +10,9 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
 
 [[ArrayInterface]]
 deps = ["IfElse", "LinearAlgebra", "Requires", "SparseArrays", "Static"]
-git-tree-sha1 = "4e988d6883cf3935e267f93f53cfc34792e0700f"
+git-tree-sha1 = "cdb00a6fb50762255021e5571cf95df3e1797a51"
 uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
-version = "3.1.15"
+version = "3.1.23"
 
 [[Artifacts]]
 uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
@@ -28,15 +22,9 @@ uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
 
 [[ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "4b28f88cecf5d9a07c85b9ce5209a361ecaff34a"
+git-tree-sha1 = "bdc0937269321858ab2a4f288486cb258b9a0af7"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
-version = "0.9.45"
-
-[[CodecZlib]]
-deps = ["TranscodingStreams", "Zlib_jll"]
-git-tree-sha1 = "ded953804d019afa9a3f98981d99b33e3db7b6da"
-uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
-version = "0.7.0"
+version = "1.3.0"
 
 [[Combinatorics]]
 git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860"
@@ -50,9 +38,9 @@ version = "0.2.0"
 
 [[Compat]]
 deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
-git-tree-sha1 = "e4e2b39db08f967cc1360951f01e8a75ec441cab"
+git-tree-sha1 = "344f143fa0ec67e47917848795ab19c6a455f32c"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "3.30.0"
+version = "3.32.0"
 
 [[CompilerSupportLibraries_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -65,14 +53,14 @@ version = "0.1.2"
 
 [[ConstructionBase]]
 deps = ["LinearAlgebra"]
-git-tree-sha1 = "1dc43957fb9a1574fa1b7a449e101bd1fd3a9fb7"
+git-tree-sha1 = "f74e9d5388b8620b4cee35d4c5a618dd4dc547f4"
 uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9"
-version = "1.2.1"
+version = "1.3.0"
 
 [[DataAPI]]
-git-tree-sha1 = "dfb3b7e89e395be1e25c2ad6d7690dc29cc53b1d"
+git-tree-sha1 = "ee400abb2298bd13bfc3df1c412ed228061a2385"
 uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
-version = "1.6.0"
+version = "1.7.0"
 
 [[DataStructures]]
 deps = ["Compat", "InteractiveUtils", "OrderedCollections"]
@@ -95,9 +83,9 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"
 
 [[DiffRules]]
 deps = ["NaNMath", "Random", "SpecialFunctions"]
-git-tree-sha1 = "214c3fcac57755cfda163d91c58893a8723f93e9"
+git-tree-sha1 = "85d2d9e2524da988bffaf2a381864e20d2dae08d"
 uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
-version = "1.0.2"
+version = "1.2.1"
 
 [[Distributed]]
 deps = ["Random", "Serialization", "Sockets"]
@@ -105,15 +93,15 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[Distributions]]
 deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"]
-git-tree-sha1 = "64a3e756c44dcf33bd33e7f500113d9992a02e92"
+git-tree-sha1 = "3889f646423ce91dd1055a76317e9a1d3a23fff1"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.2"
+version = "0.25.11"
 
 [[DocStringExtensions]]
-deps = ["LibGit2", "Markdown", "Pkg", "Test"]
-git-tree-sha1 = "9d4f64f79012636741cf01133158a54b24924c32"
+deps = ["LibGit2"]
+git-tree-sha1 = "a32185f5428d3986f47c2ab78b1f216d5e6cc96f"
 uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
-version = "0.8.4"
+version = "0.8.5"
 
 [[DomainSets]]
 deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "StaticArrays", "Statistics", "Test"]
@@ -125,6 +113,12 @@ version = "0.5.2"
 deps = ["ArgTools", "LibCURL", "NetworkOptions"]
 uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
 
+[[DynamicPolynomials]]
+deps = ["DataStructures", "Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"]
+git-tree-sha1 = "e9d82a6f35d199d3821c069932115e19ca2a2b3d"
+uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07"
+version = "0.3.19"
+
 [[EllipsisNotation]]
 deps = ["ArrayInterface"]
 git-tree-sha1 = "8041575f021cba5a099a456b4163c9a08b566a02"
@@ -132,15 +126,15 @@ uuid = "da5c29d0-fa7d-589e-88eb-ea29b0a81949"
 version = "1.1.0"
 
 [[ExprTools]]
-git-tree-sha1 = "10407a39b87f29d47ebaca8edbc75d7c302ff93e"
+git-tree-sha1 = "b7e3d17636b348f005f11040025ae8c6f645fe92"
 uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04"
-version = "0.1.3"
+version = "0.1.6"
 
 [[FillArrays]]
-deps = ["LinearAlgebra", "Random", "SparseArrays"]
-git-tree-sha1 = "31939159aeb8ffad1d4d8ee44d07f8558273120a"
+deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"]
+git-tree-sha1 = "8c8eac2af06ce35973c3eadb4ab3243076a408e7"
 uuid = "1a297f60-69ca-5386-bcde-b61e274b549b"
-version = "0.11.7"
+version = "0.12.1"
 
 [[Formatting]]
 deps = ["Printf"]
@@ -185,9 +179,9 @@ version = "1.2.1"
 
 [[LabelledArrays]]
 deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "StaticArrays"]
-git-tree-sha1 = "248a199fa42ec62922225334131c9330e1dd72f6"
+git-tree-sha1 = "bdde43e002847c34c206735b1cf860bc3abd35e7"
 uuid = "2ee39098-c373-598a-b85f-a56591580800"
-version = "1.6.1"
+version = "1.6.4"
 
 [[Latexify]]
 deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "Printf", "Requires"]
@@ -214,36 +208,24 @@ uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
 [[Libdl]]
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
 
-[[Libiconv_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "42b62845d70a619f063a7da093d995ec8e15e778"
-uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
-version = "1.16.1+1"
-
-[[LightXML]]
-deps = ["Libdl", "XML2_jll"]
-git-tree-sha1 = "e129d9391168c677cd4800f5c0abb1ed8cb3794f"
-uuid = "9c8b4983-aa76-5018-a973-4c85ecc9e179"
-version = "0.9.0"
-
 [[LinearAlgebra]]
 deps = ["Libdl"]
 uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 
 [[LogExpFunctions]]
 deps = ["DocStringExtensions", "LinearAlgebra"]
-git-tree-sha1 = "1ba664552f1ef15325e68dc4c05c3ef8c2d5d885"
+git-tree-sha1 = "7bd5f6565d80b6bf753738d2bc40a5dfea072070"
 uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
-version = "0.2.4"
+version = "0.2.5"
 
 [[Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
 [[MacroTools]]
 deps = ["Markdown", "Random"]
-git-tree-sha1 = "6a8a2a625ab0dea913aba95c11370589e0239ff0"
+git-tree-sha1 = "0fb723cd8c45858c22169b2e42269e53271a6df7"
 uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
-version = "0.5.6"
+version = "0.5.7"
 
 [[Markdown]]
 deps = ["Base64"]
@@ -265,6 +247,18 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804"
 [[MozillaCACerts_jll]]
 uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
 
+[[MultivariatePolynomials]]
+deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics"]
+git-tree-sha1 = "45c9940cec79dedcdccc73cc6dd09ea8b8ab142c"
+uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3"
+version = "0.3.18"
+
+[[MutableArithmetics]]
+deps = ["LinearAlgebra", "SparseArrays", "Test"]
+git-tree-sha1 = "3927848ccebcc165952dc0d9ac9aa274a87bfe01"
+uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
+version = "0.2.20"
+
 [[NaNMath]]
 git-tree-sha1 = "bfe47e760d60b82b66b61d2d44128b62e3a369fb"
 uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
@@ -275,9 +269,9 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
 
 [[OpenSpecFun_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "b9b8b8ed236998f91143938a760c2112dceeb2b4"
+git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1"
 uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
-version = "0.5.4+0"
+version = "0.5.5+0"
 
 [[OrderedCollections]]
 git-tree-sha1 = "85f8e6578bf1f9ee0d11e7bb1b1456435479d47c"
@@ -286,9 +280,9 @@ version = "1.4.1"
 
 [[PDMats]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "f82a0e71f222199de8e9eb9a09977bd0767d52a0"
+git-tree-sha1 = "4dd403333bcf0909341cfe57ec115152f937d7d8"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.11.0"
+version = "0.11.1"
 
 [[Pkg]]
 deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
@@ -318,27 +312,21 @@ uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
 deps = ["Serialization"]
 uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 
-[[RandomExtensions]]
-deps = ["Random", "SparseArrays"]
-git-tree-sha1 = "062986376ce6d394b23d5d90f01d81426113a3c9"
-uuid = "fb686558-2515-59ef-acaa-46db3789a887"
-version = "0.4.3"
-
 [[RecipesBase]]
 git-tree-sha1 = "b3fb709f3c97bfc6e948be68beeecb55a0b340ae"
 uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01"
 version = "1.1.1"
 
 [[RecursiveArrayTools]]
-deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArrays", "Statistics", "ZygoteRules"]
-git-tree-sha1 = "b3f4e34548b3d3d00e5571fd7bc0a33980f01571"
+deps = ["ArrayInterface", "ChainRulesCore", "DocStringExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArrays", "Statistics", "ZygoteRules"]
+git-tree-sha1 = "6cf3169ab34096657b79ea7d26f64ad79b3a5ea7"
 uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
-version = "2.11.4"
+version = "2.17.0"
 
 [[Reexport]]
-git-tree-sha1 = "57d8440b0c7d98fc4f889e478e80f268d534c9d5"
+git-tree-sha1 = "5f6c21241f0f655da3952fd60aa18477cf96c220"
 uuid = "189a3867-3050-52da-a836-e630ba90ab69"
-version = "1.0.0"
+version = "1.1.0"
 
 [[Requires]]
 deps = ["UUIDs"]
@@ -360,27 +348,27 @@ version = "0.3.0+0"
 
 [[RuntimeGeneratedFunctions]]
 deps = ["ExprTools", "SHA", "Serialization"]
-git-tree-sha1 = "5975a4f824533fa4240f40d86f1060b9fc80d7cc"
+git-tree-sha1 = "cdc1e4278e91a6ad530770ebb327f9ed83cf10c4"
 uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47"
-version = "0.5.2"
+version = "0.5.3"
 
 [[SHA]]
 uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
 
 [[SciMLBase]]
 deps = ["ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "RecipesBase", "RecursiveArrayTools", "StaticArrays", "Statistics", "Tables", "TreeViews"]
-git-tree-sha1 = "05aa1ee0b6f0c875b0d6572a77c57225e47b688f"
+git-tree-sha1 = "f4bcc1bc78857e0602de2ec548b08ac73bf29acc"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "1.13.4"
+version = "1.18.4"
 
 [[Serialization]]
 uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
 
 [[Setfield]]
 deps = ["ConstructionBase", "Future", "MacroTools", "Requires"]
-git-tree-sha1 = "d5640fc570fb1b6c54512f0bd3853866bd298b3e"
+git-tree-sha1 = "fca29e68c5062722b5b4435594c3d1ba557072a3"
 uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46"
-version = "0.7.0"
+version = "0.7.1"
 
 [[SharedArrays]]
 deps = ["Distributed", "Mmap", "Random", "Serialization"]
@@ -391,9 +379,9 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
 
 [[SortingAlgorithms]]
 deps = ["DataStructures"]
-git-tree-sha1 = "2ec1962eba973f383239da22e75218565c390a96"
+git-tree-sha1 = "b3363d7460f7d098ca0912c69b082f75625d7508"
 uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
-version = "1.0.0"
+version = "1.0.1"
 
 [[SparseArrays]]
 deps = ["LinearAlgebra", "Random"]
@@ -401,21 +389,21 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 
 [[SpecialFunctions]]
 deps = ["ChainRulesCore", "LogExpFunctions", "OpenSpecFun_jll"]
-git-tree-sha1 = "371204984184315ed7228bcc604d08e1bbc18f31"
+git-tree-sha1 = "508822dca004bf62e210609148511ad03ce8f1d8"
 uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
-version = "1.4.2"
+version = "1.6.0"
 
 [[Static]]
 deps = ["IfElse"]
-git-tree-sha1 = "ddec5466a1d2d7e58adf9a427ba69763661aacf6"
+git-tree-sha1 = "62701892d172a2fa41a1f829f66d2b0db94a9a63"
 uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
-version = "0.2.4"
+version = "0.3.0"
 
 [[StaticArrays]]
 deps = ["LinearAlgebra", "Random", "Statistics"]
-git-tree-sha1 = "42378d3bab8b4f57aa1ca443821b752850592668"
+git-tree-sha1 = "3240808c6d463ac46f1c1cd7638375cd22abbccb"
 uuid = "90137ffa-7385-5640-81b9-e52037218182"
-version = "1.2.2"
+version = "1.2.12"
 
 [[Statistics]]
 deps = ["LinearAlgebra", "SparseArrays"]
@@ -428,9 +416,9 @@ version = "1.0.0"
 
 [[StatsBase]]
 deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
-git-tree-sha1 = "2f6792d523d7448bbe2fec99eca9218f06cc746d"
+git-tree-sha1 = "fed1ec1e65749c4d96fc20dd13bea72b55457e62"
 uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
-version = "0.33.8"
+version = "0.33.9"
 
 [[StatsFuns]]
 deps = ["LogExpFunctions", "Rmath", "SpecialFunctions"]
@@ -443,16 +431,16 @@ deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
 uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
 
 [[SymbolicUtils]]
-deps = ["AbstractAlgebra", "AbstractTrees", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "IfElse", "LabelledArrays", "LinearAlgebra", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "TimerOutputs"]
-git-tree-sha1 = "e024f71ab5d34fcb7e27740c304b65a64264f48f"
+deps = ["AbstractTrees", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "TimerOutputs"]
+git-tree-sha1 = "591440eabc9407917b1fedd1e929710dba5b0958"
 uuid = "d1185830-fcd6-423d-90d6-eec64667417b"
-version = "0.11.2"
+version = "0.13.3"
 
 [[Symbolics]]
-deps = ["AbstractAlgebra", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "IfElse", "Latexify", "Libdl", "LinearAlgebra", "MacroTools", "NaNMath", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "SymbolicUtils", "TreeViews"]
-git-tree-sha1 = "118066770a47fc4f38b6580478ac196114b7fb5c"
+deps = ["ConstructionBase", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "IfElse", "Latexify", "Libdl", "LinearAlgebra", "MacroTools", "NaNMath", "RecipesBase", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicUtils", "TreeViews"]
+git-tree-sha1 = "35ac67af1fb546fb663de1e3e53a28b76e305a85"
 uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7"
-version = "0.1.27"
+version = "2.1.0"
 
 [[TOML]]
 deps = ["Dates"]
@@ -466,9 +454,9 @@ version = "1.0.1"
 
 [[Tables]]
 deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"]
-git-tree-sha1 = "aa30f8bb63f9ff3f8303a06c604c8500a69aa791"
+git-tree-sha1 = "d0c690d37c73aeb5ca063056283fde5585a41710"
 uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
-version = "1.4.3"
+version = "1.5.0"
 
 [[Tar]]
 deps = ["ArgTools", "SHA"]
@@ -480,15 +468,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
 [[TimerOutputs]]
 deps = ["ExprTools", "Printf"]
-git-tree-sha1 = "bf8aacc899a1bd16522d0350e1e2310510d77236"
+git-tree-sha1 = "209a8326c4f955e2442c07b56029e88bb48299c7"
 uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
-version = "0.5.9"
-
-[[TranscodingStreams]]
-deps = ["Random", "Test"]
-git-tree-sha1 = "7c53c35547de1c5b9d46a4797cf6d8253807108c"
-uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.9.5"
+version = "0.5.12"
 
 [[TreeViews]]
 deps = ["Test"]
@@ -503,18 +485,6 @@ uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
 [[Unicode]]
 uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
 
-[[WriteVTK]]
-deps = ["Base64", "CodecZlib", "FillArrays", "LightXML", "Random", "TranscodingStreams"]
-git-tree-sha1 = "2d559f58ff021c0f0f3d2394d2688a84a84257aa"
-uuid = "64499a7a-5c06-52f2-abe2-ccb03c286192"
-version = "1.9.2"
-
-[[XML2_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"]
-git-tree-sha1 = "1acf5bdf07aa0907e0a37d3718bb88d4b687b74a"
-uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
-version = "2.9.12+0"
-
 [[Zlib_jll]]
 deps = ["Libdl"]
 uuid = "83775a58-1f1d-513f-b197-d71354ab007a"

From f9598c029912ecc4143f9f495e0d00cd1f436af5 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Sebastian=20Miclu=C8=9Ba-C=C3=A2mpeanu?=
 <m.c.sebastian95@gmail.com>
Date: Wed, 11 Aug 2021 11:15:35 +0300
Subject: [PATCH 4/8] Update tests

AbstractAlgebra dep removed
---
 test/cite_str.jl | 24 ++++++++++++------------
 test/runtests.jl |  6 ++----
 2 files changed, 14 insertions(+), 16 deletions(-)

diff --git a/test/cite_str.jl b/test/cite_str.jl
index 474d81d..8e93b83 100644
--- a/test/cite_str.jl
+++ b/test/cite_str.jl
@@ -2,19 +2,19 @@ const CITE_STR_JL =
 "This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
 "and made use of the following packages: "*
 "LabelledArrays.jl\\cite[LabelledArrays]{DifferentialEquations.jl-2017}, "*
-"QuadGK.jl\\cite[QuadGK]{quadgk}, Symbolics.jl\\cite[Symbolics]{gowda2021high}, "*
-"RecursiveArrayTools.jl\\cite[RecursiveArrayTools]{DifferentialEquations.jl-2017}, "*
-"ArrayInterface.jl\\cite[ArrayInterface]{DifferentialEquations.jl-2017} and "*
-"AbstractAlgebra.jl\\cite[AbstractAlgebra]{AbstractAlgebra.jl-2017}."
+"QuadGK.jl\\cite[QuadGK]{quadgk}, "*
+"Symbolics.jl\\cite[Symbolics]{gowda2021high}, "*
+"RecursiveArrayTools.jl\\cite[RecursiveArrayTools]{DifferentialEquations.jl-2017} and "*
+"ArrayInterface.jl\\cite[ArrayInterface]{DifferentialEquations.jl-2017}."
 
 const CITE_STR_JL_AUTO =
 "This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
 "and made use of the following packages: "*
 "LabelledArrays.jl\\cite[LabelledArrays]{DifferentialEquations.jl-2017}, "*
-"QuadGK.jl\\cite[QuadGK]{quadgk}, Symbolics.jl\\cite[Symbolics]{gowda2021high}, "*
-"RecursiveArrayTools.jl\\cite[RecursiveArrayTools]{DifferentialEquations.jl-2017}, "*
-"ArrayInterface.jl\\cite[ArrayInterface]{DifferentialEquations.jl-2017} and "*
-"AbstractAlgebra.jl\\autocite[AbstractAlgebra]{AbstractAlgebra.jl-2017}."
+"QuadGK.jl\\cite[QuadGK]{quadgk}, "*
+"Symbolics.jl\\autocite[Symbolics]{gowda2021high}, "*
+"RecursiveArrayTools.jl\\cite[RecursiveArrayTools]{DifferentialEquations.jl-2017} and "*
+"ArrayInterface.jl\\cite[ArrayInterface]{DifferentialEquations.jl-2017}."
 
 const CITE_STR_JL_SINGLE =
 "This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
@@ -29,10 +29,10 @@ const CITE_STR =
 "This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
 "and made use of the following packages: "*
 "LabelledArrays\\cite[LabelledArrays]{DifferentialEquations.jl-2017}, "*
-"QuadGK\\cite[QuadGK]{quadgk}, Symbolics\\cite[Symbolics]{gowda2021high}, "*
-"RecursiveArrayTools\\cite[RecursiveArrayTools]{DifferentialEquations.jl-2017}, "*
-"ArrayInterface\\cite[ArrayInterface]{DifferentialEquations.jl-2017} and "*
-"AbstractAlgebra\\cite[AbstractAlgebra]{AbstractAlgebra.jl-2017}."
+"QuadGK\\cite[QuadGK]{quadgk}, "*
+"Symbolics\\cite[Symbolics]{gowda2021high}, "*
+"RecursiveArrayTools\\cite[RecursiveArrayTools]{DifferentialEquations.jl-2017} and "*
+"ArrayInterface\\cite[ArrayInterface]{DifferentialEquations.jl-2017}."
 
 const CITE_BADGE =
 "This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
diff --git a/test/runtests.jl b/test/runtests.jl
index 34c400a..586fe13 100644
--- a/test/runtests.jl
+++ b/test/runtests.jl
@@ -26,7 +26,6 @@ include("cite_str.jl")
         @test "Symbolics" ∈ pkgs
         @test "RecursiveArrayTools" ∈ pkgs
         @test "ArrayInterface" ∈ pkgs
-        @test "AbstractAlgebra" ∈ pkgs
         # There is an error in the CITATION.bib for Distributions
         @test_broken haskey(citations, "Distributions")
     end
@@ -35,7 +34,6 @@ include("cite_str.jl")
         bib = bibliography(citations)
         @test haskey(bib, "DifferentialEquations.jl-2017")
         @test haskey(bib, "quadgk")
-        @test haskey(bib, "AbstractAlgebra.jl-2017")
         @test haskey(bib, "gowda2021high")
     end
 
@@ -48,7 +46,6 @@ include("cite_str.jl")
 
         @test haskey(bib, "DifferentialEquations.jl-2017")
         @test haskey(bib, "quadgk")
-        @test haskey(bib, "AbstractAlgebra.jl-2017")
         @test haskey(bib, "gowda2021high")
     end
 
@@ -68,7 +65,7 @@ include("cite_str.jl")
         str = make_sentence(citations, jl=false)
         @test str == CITE_STR
 
-        str = make_sentence(citations, cite_commands=Dict{String,String}("AbstractAlgebra"=>"\\autocite"))
+        str = make_sentence(citations, cite_commands=Dict{String,String}("Symbolics"=>"\\autocite"))
         @test str == CITE_STR_JL_AUTO
 
         @testset "Clipboard" begin
@@ -89,6 +86,7 @@ include("cite_str.jl")
             @test_broken clipboard() == CITE_STR
         end
     end
+
     @testset "PkgCite using badge" begin
         zenodo_env = "badge_env"
         Pkg.activate(zenodo_env)

From 9f40e4f68a2ac0c61e2af73969716a6dc6c2ef7c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Sebastian=20Miclu=C8=9Ba-C=C3=A2mpeanu?=
 <m.c.sebastian95@gmail.com>
Date: Wed, 11 Aug 2021 11:16:10 +0300
Subject: [PATCH 5/8] Fix line endings

---
 test/cite_str.jl | 80 ++++++++++++++++++++++++------------------------
 1 file changed, 40 insertions(+), 40 deletions(-)

diff --git a/test/cite_str.jl b/test/cite_str.jl
index 8e93b83..9bcbb0e 100644
--- a/test/cite_str.jl
+++ b/test/cite_str.jl
@@ -1,40 +1,40 @@
-const CITE_STR_JL =
-"This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
-"and made use of the following packages: "*
-"LabelledArrays.jl\\cite[LabelledArrays]{DifferentialEquations.jl-2017}, "*
-"QuadGK.jl\\cite[QuadGK]{quadgk}, "*
-"Symbolics.jl\\cite[Symbolics]{gowda2021high}, "*
-"RecursiveArrayTools.jl\\cite[RecursiveArrayTools]{DifferentialEquations.jl-2017} and "*
-"ArrayInterface.jl\\cite[ArrayInterface]{DifferentialEquations.jl-2017}."
-
-const CITE_STR_JL_AUTO =
-"This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
-"and made use of the following packages: "*
-"LabelledArrays.jl\\cite[LabelledArrays]{DifferentialEquations.jl-2017}, "*
-"QuadGK.jl\\cite[QuadGK]{quadgk}, "*
-"Symbolics.jl\\autocite[Symbolics]{gowda2021high}, "*
-"RecursiveArrayTools.jl\\cite[RecursiveArrayTools]{DifferentialEquations.jl-2017} and "*
-"ArrayInterface.jl\\cite[ArrayInterface]{DifferentialEquations.jl-2017}."
-
-const CITE_STR_JL_SINGLE =
-"This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
-"and made use of the Symbolics.jl\\cite[Symbolics]{gowda2021high} package."
-
-const CITE_STR_JL_SINGLE_TT =
-"This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
-"and made use of the \\texttt{Symbolics.jl}\\cite[Symbolics]{gowda2021high} package."
-
-
-const CITE_STR =
-"This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
-"and made use of the following packages: "*
-"LabelledArrays\\cite[LabelledArrays]{DifferentialEquations.jl-2017}, "*
-"QuadGK\\cite[QuadGK]{quadgk}, "*
-"Symbolics\\cite[Symbolics]{gowda2021high}, "*
-"RecursiveArrayTools\\cite[RecursiveArrayTools]{DifferentialEquations.jl-2017} and "*
-"ArrayInterface\\cite[ArrayInterface]{DifferentialEquations.jl-2017}."
-
-const CITE_BADGE =
-"This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
-"and made use of the Plots.jl\\cite[Plots]{https://doi.org/10.5281/zenodo.4725317} "*
-"and WriteVTK.jl\\cite[WriteVTK]{https://doi.org/10.5281/zenodo.4692172} packages."
+const CITE_STR_JL =
+"This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
+"and made use of the following packages: "*
+"LabelledArrays.jl\\cite[LabelledArrays]{DifferentialEquations.jl-2017}, "*
+"QuadGK.jl\\cite[QuadGK]{quadgk}, "*
+"Symbolics.jl\\cite[Symbolics]{gowda2021high}, "*
+"RecursiveArrayTools.jl\\cite[RecursiveArrayTools]{DifferentialEquations.jl-2017} and "*
+"ArrayInterface.jl\\cite[ArrayInterface]{DifferentialEquations.jl-2017}."
+
+const CITE_STR_JL_AUTO =
+"This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
+"and made use of the following packages: "*
+"LabelledArrays.jl\\cite[LabelledArrays]{DifferentialEquations.jl-2017}, "*
+"QuadGK.jl\\cite[QuadGK]{quadgk}, "*
+"Symbolics.jl\\autocite[Symbolics]{gowda2021high}, "*
+"RecursiveArrayTools.jl\\cite[RecursiveArrayTools]{DifferentialEquations.jl-2017} and "*
+"ArrayInterface.jl\\cite[ArrayInterface]{DifferentialEquations.jl-2017}."
+
+const CITE_STR_JL_SINGLE =
+"This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
+"and made use of the Symbolics.jl\\cite[Symbolics]{gowda2021high} package."
+
+const CITE_STR_JL_SINGLE_TT =
+"This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
+"and made use of the \\texttt{Symbolics.jl}\\cite[Symbolics]{gowda2021high} package."
+
+
+const CITE_STR =
+"This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
+"and made use of the following packages: "*
+"LabelledArrays\\cite[LabelledArrays]{DifferentialEquations.jl-2017}, "*
+"QuadGK\\cite[QuadGK]{quadgk}, "*
+"Symbolics\\cite[Symbolics]{gowda2021high}, "*
+"RecursiveArrayTools\\cite[RecursiveArrayTools]{DifferentialEquations.jl-2017} and "*
+"ArrayInterface\\cite[ArrayInterface]{DifferentialEquations.jl-2017}."
+
+const CITE_BADGE =
+"This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
+"and made use of the Plots.jl\\cite[Plots]{https://doi.org/10.5281/zenodo.4725317} "*
+"and WriteVTK.jl\\cite[WriteVTK]{https://doi.org/10.5281/zenodo.4692172} packages."

From 04ace175921d75f754132171382ba5e5e83e5a15 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Sebastian=20Miclu=C8=9Ba-C=C3=A2mpeanu?=
 <m.c.sebastian95@gmail.com>
Date: Wed, 11 Aug 2021 11:25:54 +0300
Subject: [PATCH 6/8] Update doi for WriteVTK

---
 test/cite_str.jl | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/test/cite_str.jl b/test/cite_str.jl
index 9bcbb0e..b68a9b6 100644
--- a/test/cite_str.jl
+++ b/test/cite_str.jl
@@ -24,7 +24,6 @@ const CITE_STR_JL_SINGLE_TT =
 "This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
 "and made use of the \\texttt{Symbolics.jl}\\cite[Symbolics]{gowda2021high} package."
 
-
 const CITE_STR =
 "This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
 "and made use of the following packages: "*
@@ -37,4 +36,4 @@ const CITE_STR =
 const CITE_BADGE =
 "This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
 "and made use of the Plots.jl\\cite[Plots]{https://doi.org/10.5281/zenodo.4725317} "*
-"and WriteVTK.jl\\cite[WriteVTK]{https://doi.org/10.5281/zenodo.4692172} packages."
+"and WriteVTK.jl\\cite[WriteVTK]{https://doi.org/10.5281/zenodo.5068937} packages."

From 9f8d9b3c27314f47ef436d3dd45c4c976a8c12b5 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Sebastian=20Miclu=C8=9Ba-C=C3=A2mpeanu?=
 <m.c.sebastian95@gmail.com>
Date: Thu, 12 Aug 2021 10:19:37 +0300
Subject: [PATCH 7/8] Sort citations

---
 Project.toml     |  2 +-
 src/citations.jl |  2 +-
 test/cite_str.jl | 12 ++++++------
 3 files changed, 8 insertions(+), 8 deletions(-)

diff --git a/Project.toml b/Project.toml
index a549a01..c135744 100644
--- a/Project.toml
+++ b/Project.toml
@@ -12,8 +12,8 @@ InteractiveUtils = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 
 [compat]
-Bibliography = "0.2"
 BibParser = "0.1"
+Bibliography = "0.2"
 DataStructures = "0.18"
 HTTP = "0.9"
 julia = "1.6"
diff --git a/src/citations.jl b/src/citations.jl
index 41e28f3..3fad9e4 100644
--- a/src/citations.jl
+++ b/src/citations.jl
@@ -52,7 +52,7 @@ function collect_citations(only_direct::Bool; badge=false)
         end
     end
 
-    return pkg_citations
+    return sort(pkg_citations)
 end
 
 function bibliography(pkg_citations)
diff --git a/test/cite_str.jl b/test/cite_str.jl
index b68a9b6..99c1d36 100644
--- a/test/cite_str.jl
+++ b/test/cite_str.jl
@@ -1,20 +1,20 @@
 const CITE_STR_JL =
 "This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
 "and made use of the following packages: "*
+"ArrayInterface.jl\\cite[ArrayInterface]{DifferentialEquations.jl-2017}, "*
 "LabelledArrays.jl\\cite[LabelledArrays]{DifferentialEquations.jl-2017}, "*
 "QuadGK.jl\\cite[QuadGK]{quadgk}, "*
-"Symbolics.jl\\cite[Symbolics]{gowda2021high}, "*
 "RecursiveArrayTools.jl\\cite[RecursiveArrayTools]{DifferentialEquations.jl-2017} and "*
-"ArrayInterface.jl\\cite[ArrayInterface]{DifferentialEquations.jl-2017}."
+"Symbolics.jl\\cite[Symbolics]{gowda2021high}."
 
 const CITE_STR_JL_AUTO =
 "This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
 "and made use of the following packages: "*
+"ArrayInterface.jl\\cite[ArrayInterface]{DifferentialEquations.jl-2017}, "*
 "LabelledArrays.jl\\cite[LabelledArrays]{DifferentialEquations.jl-2017}, "*
 "QuadGK.jl\\cite[QuadGK]{quadgk}, "*
-"Symbolics.jl\\autocite[Symbolics]{gowda2021high}, "*
 "RecursiveArrayTools.jl\\cite[RecursiveArrayTools]{DifferentialEquations.jl-2017} and "*
-"ArrayInterface.jl\\cite[ArrayInterface]{DifferentialEquations.jl-2017}."
+"Symbolics.jl\\autocite[Symbolics]{gowda2021high}."
 
 const CITE_STR_JL_SINGLE =
 "This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
@@ -27,11 +27,11 @@ const CITE_STR_JL_SINGLE_TT =
 const CITE_STR =
 "This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*
 "and made use of the following packages: "*
+"ArrayInterface\\cite[ArrayInterface]{DifferentialEquations.jl-2017}, "*
 "LabelledArrays\\cite[LabelledArrays]{DifferentialEquations.jl-2017}, "*
 "QuadGK\\cite[QuadGK]{quadgk}, "*
-"Symbolics\\cite[Symbolics]{gowda2021high}, "*
 "RecursiveArrayTools\\cite[RecursiveArrayTools]{DifferentialEquations.jl-2017} and "*
-"ArrayInterface\\cite[ArrayInterface]{DifferentialEquations.jl-2017}."
+"Symbolics\\cite[Symbolics]{gowda2021high}."
 
 const CITE_BADGE =
 "This work was done in \\cite[Julia v$VERSION]{Julia-2017} "*

From b06a43d4ebb141942b5bbba76809efba40f1faf1 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Sebastian=20Miclu=C8=9Ba-C=C3=A2mpeanu?=
 <m.c.sebastian95@gmail.com>
Date: Thu, 12 Aug 2021 11:01:31 +0300
Subject: [PATCH 8/8] Fix deprecation

---
 src/citations.jl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/citations.jl b/src/citations.jl
index 3fad9e4..e093431 100644
--- a/src/citations.jl
+++ b/src/citations.jl
@@ -52,7 +52,7 @@ function collect_citations(only_direct::Bool; badge=false)
         end
     end
 
-    return sort(pkg_citations)
+    return sort!(DataStructures.OrderedDict(pkg_citations))
 end
 
 function bibliography(pkg_citations)