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NIF-Investigation.ttl
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@prefix : <file:///ERROR/EMPTY/PREFIX/BANNED/> .
@prefix bearerOf: <http://purl.obolibrary.org/obo/RO_0000053> .
@prefix BFO: <http://purl.obolibrary.org/obo/BFO_> .
@prefix BIRNLEX: <http://uri.neuinfo.org/nif/nifstd/birnlex_> .
@prefix CHEBI: <http://purl.obolibrary.org/obo/CHEBI_> .
@prefix COGAT: <http://www.cognitiveatlas.org/ontology/cogat.owl#> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix ILX: <http://uri.interlex.org/base/ilx_> .
@prefix NIFRID: <http://uri.neuinfo.org/nif/nifstd/readable/> .
@prefix NIFSTD: <http://uri.neuinfo.org/nif/nifstd/> .
@prefix NLX: <http://uri.neuinfo.org/nif/nifstd/nlx_> .
@prefix NLXINV: <http://uri.neuinfo.org/nif/nifstd/nlx_inv_> .
@prefix NLXRES: <http://uri.neuinfo.org/nif/nifstd/nlx_res_> .
@prefix OBI: <http://purl.obolibrary.org/obo/OBI_> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix PATO: <http://purl.obolibrary.org/obo/PATO_> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
<http://ontology.neuinfo.org/NIF/ttl/NIF-Investigation.ttl> a owl:Ontology ;
owl:imports <http://ontology.neuinfo.org/NIF/ttl/BIRNLex-OBI-proxy.ttl>,
<http://ontology.neuinfo.org/NIF/ttl/external/cogat_v0.3.owl>,
<http://ontology.neuinfo.org/NIF/ttl/external/CogPO.ttl>,
<http://ontology.neuinfo.org/NIF/ttl/NIF-Government-Granting-Agency.ttl>,
<http://ontology.neuinfo.org/NIF/ttl/NIF-Resource.ttl>,
<http://ontology.neuinfo.org/NIF/ttl/NIF-Scientific-Discipline.ttl>,
<http://ontology.neuinfo.org/NIF/ttl/nif_backend.ttl> ;
dc:title "NIF-Investigation"^^xsd:string ;
skos:changeNote """v.1.2 (July, 2009) - New classes have been added from NeuroLex wiki since
the February release (Class ID: nlx_inv_20090401 to 20090610).
v 2.0 (August, 2011) - NIF-Investigation now imports NIF-Resource.owl, NIF-Government-Granting-Agency.owl, and NIF-Scientific-discipline.owl as part of its direct imports. Imports Cognitive paradigm ontology (CogPO).
v 2.1 (April, 2012) - Modified the hierarchy of 'Data set'. all the subclasses of 'Data set' are kept as 'Information content entity'. The reason for this chage was to provide a cleaner hierarchy for NIF Resource descriptor.
v2.2 (October, 2012) - New classes added under Electron microscopic imaging assay. Definition changed for Segmentation Software from NITRC.
v2.3 (December, 2012) - Addition of NEMO (v.2.98) as an imported module.
Addition of Cognitive Atlas Ontology (CogAt v.0.3) as an import. Note that we have only imported the 'concepts' and excluded the 'task' classes for now.
Newly defined classes: Neuroimaging and Immunolabeling."""^^xsd:string ;
owl:versionInfo "2.3; December 1, 2012"^^xsd:string .
### Object Properties
OBI:0000316 a owl:ObjectProperty .
### Classes
BIRNLEX:2000 a owl:Class ;
rdfs:label "R-weighted back projection"^^xsd:string ;
skos:prefLabel "R-weighted back projection"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2202 ;
skos:editorialNote "Adapted from IMOD user manual. Kremer JR, Mastronarde DN, McIntosh JR. Computer visualization of three-dimensional image data using IMOD. J Struct Biol. 1996 Jan-Feb;116(1):71-6."^^xsd:string ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:birnlexDefinition "A reconstruction algorithm for electron tomography. In R-weighted backprojection, each horizontal line of input data is filtered to weight each spatial frequency proportional to its radius in Fourier space. This is radial weighting, and the filter is referred to as a radial filter."^^xsd:string ;
NIFRID:bonfireID "BF_T0000139"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Maryann_Martone ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2001 a owl:Class ;
owl:deprecated true ;
rdfs:label "Normal control group"^^xsd:string ;
skos:prefLabel "Normal control group"^^xsd:string ;
rdfs:subClassOf owl:DeprecatedClass ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2007-03-05"^^xsd:string ;
NIFRID:birnlexDefinition "A subject group consisting of individuals that display a canonical phenotype for the phenotype under investigation in a scientific study. Membership in this group does not imply that the subject displays no abberrant phenotypes. For example, an adult that displays no symptoms of respiratory disease may serve as a normal control in a study even though the subject posssess a rare blood type."^^xsd:string ;
NIFRID:bonfireID "BF_T0000217"^^xsd:string ;
NIFRID:hasFormerParentClass <http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlexInvestigation_174> .
BIRNLEX:2002 a owl:Class ;
rdfs:label "Structural MRI platform"^^xsd:string ;
skos:prefLabel "Structural MRI platform"^^xsd:string ;
NIFRID:synonym "MRI platform"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2204 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2003 a owl:Class ;
rdfs:label "Action observation paradigm"^^xsd:string ;
skos:prefLabel "Action observation paradigm"^^xsd:string ;
NIFRID:synonym "Action Observation"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2075 ;
owl:disjointWith BIRNLEX:2005,
BIRNLEX:2007,
BIRNLEX:2011,
BIRNLEX:2013,
BIRNLEX:2014,
BIRNLEX:2017,
BIRNLEX:2024,
BIRNLEX:2047,
BIRNLEX:2088,
BIRNLEX:2142,
BIRNLEX:2176,
BIRNLEX:2181,
BIRNLEX:2188,
BIRNLEX:2194,
BIRNLEX:2198,
BIRNLEX:2203 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:birnlexDefinition "A behavioral paradigm in which subjects view images of moving body parts (Brain Map)."^^xsd:string ;
NIFRID:bonfireID "BF_T0000338"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:pending_final_vetting ;
NIFRID:hasExternalSource NIFRID:BrainMap.org ;
NIFRID:pendingActionNote "Clarify the exact nature of this task"^^xsd:string .
BIRNLEX:2004 a owl:Class ;
rdfs:label "Sample sectioning"^^xsd:string ;
skos:prefLabel "Sample sectioning"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2180 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2005 a owl:Class ;
rdfs:label "Episodic recall paradigm"^^xsd:string ;
skos:prefLabel "Episodic recall paradigm"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2075 ;
owl:disjointWith BIRNLEX:2007,
BIRNLEX:2011,
BIRNLEX:2013,
BIRNLEX:2014,
BIRNLEX:2017,
BIRNLEX:2024,
BIRNLEX:2047,
BIRNLEX:2088,
BIRNLEX:2142,
BIRNLEX:2176,
BIRNLEX:2181,
BIRNLEX:2188,
BIRNLEX:2194,
BIRNLEX:2198,
BIRNLEX:2203 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:birnlexDefinition "A behavioral paradigm in which subjects recall items from episodic memory (autobiographical history, long-term event memories)."^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Angie_Laird,
NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:hasExternalSource NIFRID:BrainMap.org .
BIRNLEX:2006 a owl:Class ;
rdfs:label "Difference"^^xsd:string ;
skos:prefLabel "Difference"^^xsd:string ;
rdfs:subClassOf BIRNLEX:11004 ;
NIFRID:createdDate "2007-03-09"^^xsd:string ;
NIFRID:modifiedDate "2007-03-09"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:tempDefinition "A quantitative value representing the difference of two underlying quantitative values."^^xsd:string .
BIRNLEX:2007 a owl:Class ;
rdfs:label "Breathhold paradigm"^^xsd:string ;
skos:prefLabel "Breathhold paradigm"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2075 ;
owl:disjointWith BIRNLEX:2011,
BIRNLEX:2013,
BIRNLEX:2014,
BIRNLEX:2017,
BIRNLEX:2024,
BIRNLEX:2047,
BIRNLEX:2088,
BIRNLEX:2142,
BIRNLEX:2176,
BIRNLEX:2181,
BIRNLEX:2188,
BIRNLEX:2194,
BIRNLEX:2198,
BIRNLEX:2203 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:birnlexDefinition "A behavioral paradigm that requires subjects to hold their breath one or more times."^^xsd:string ;
NIFRID:bonfireID "BF_T0000271"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Angie_Laird,
NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:curation_complete ;
NIFRID:hasExternalSource NIFRID:BrainMap.org .
BIRNLEX:2008 a owl:Class ;
rdfs:label "TR"^^xsd:string ;
skos:prefLabel "TR"^^xsd:string ;
NIFRID:synonym "MRI repetition time"^^xsd:string,
"Repetition time"^^xsd:string ;
skos:definition "The time interval between successive initial excitation pulses in one full playout of a pulse sequence. This is also often used in reference to the time it takes to acquire the entire volume being imaged (e.g., the brain, the ventral surface of the brain)."^^xsd:string ;
rdfs:subClassOf BIRNLEX:2052 ;
owl:versionInfo "TODO:"^^xsd:string ;
NIFRID:createdDate "2007-03-09"^^xsd:string ;
NIFRID:modifiedDate "2007-03-09"^^xsd:string,
"February 9, 2009"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug,
NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:tempDefinition "The amount of time that exists between successive pulse sequences applied to the same slice. It is delineated by initiating the first RF pulse of the sequence then repeating the same RF pulse at a time t. Variations in the value of TR have an important effect on the control of image contrast characteristics. Short values of TR (< 1000 ms) are common in images exhibiting T1 contrast, and long values of TR (> 1500 ms) are common in images exhibiting T2 contrast. TR is also a major factor in total scan time."^^xsd:string .
BIRNLEX:2009 a owl:Class ;
owl:deprecated true ;
rdfs:label "Sham control group"^^xsd:string ;
skos:prefLabel "Sham control group"^^xsd:string ;
rdfs:subClassOf owl:DeprecatedClass ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:birnlexDefinition "A subject group that has received an identical treatment to the experimental group but without the active agent under study."^^xsd:string ;
NIFRID:bonfireID "BF_T0000148"^^xsd:string ;
NIFRID:hasFormerParentClass <http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlexInvestigation_174> ;
NIFRID:isReplacedByClass BIRNLEX:11045 ;
skos:example "a placebo-treated control group"^^xsd:string .
BIRNLEX:2010 a owl:Class ;
rdfs:label "Functional MRI platform"^^xsd:string ;
skos:prefLabel "Functional MRI platform"^^xsd:string ;
NIFRID:synonym "fMRI platform"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2204 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2011 a owl:Class ;
rdfs:label "Acupuncture paradigm"^^xsd:string ;
skos:prefLabel "Acupuncture paradigm"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2075 ;
owl:disjointWith BIRNLEX:2013,
BIRNLEX:2014,
BIRNLEX:2017,
BIRNLEX:2024,
BIRNLEX:2047,
BIRNLEX:2088,
BIRNLEX:2142,
BIRNLEX:2176,
BIRNLEX:2181,
BIRNLEX:2188,
BIRNLEX:2194,
BIRNLEX:2198,
BIRNLEX:2203 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:birnlexDefinition "A behavioral paradigm where subjects are stimulated with Chinese acupuncture, a procedure in which thin needles are passed through the skin to specific points."^^xsd:string ;
NIFRID:bonfireID "BF_T0000339"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Angie_Laird,
NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:graph_position_temporary ;
NIFRID:hasExternalSource NIFRID:BrainMap.org .
BIRNLEX:2012 a owl:Class ;
rdfs:label "Sample dissection"^^xsd:string ;
skos:prefLabel "Sample dissection"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2180 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2013 a owl:Class ;
rdfs:label "Divided auditory attention paradigm"^^xsd:string ;
skos:prefLabel "Divided auditory attention paradigm"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2075 ;
owl:disjointWith BIRNLEX:2014,
BIRNLEX:2017,
BIRNLEX:2024,
BIRNLEX:2047,
BIRNLEX:2088,
BIRNLEX:2142,
BIRNLEX:2176,
BIRNLEX:2181,
BIRNLEX:2188,
BIRNLEX:2194,
BIRNLEX:2198,
BIRNLEX:2203 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:birnlexDefinition "A behavioral paradigm in which the subject are asked to respond to an auditory stimuli (tone or word discrimination, with or without distractors), during the performance of an unrelated task. Also often co-coded with Tone Monitor/Discrimination."^^xsd:string ;
NIFRID:bonfireID "BF_T0000347"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Angie_Laird,
NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:hasExternalSource NIFRID:BrainMap.org .
BIRNLEX:2014 a owl:Class ;
rdfs:label "Encoding paradigm"^^xsd:string ;
skos:prefLabel "Encoding paradigm"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2075 ;
owl:disjointWith BIRNLEX:2017,
BIRNLEX:2024,
BIRNLEX:2047,
BIRNLEX:2088,
BIRNLEX:2142,
BIRNLEX:2176,
BIRNLEX:2181,
BIRNLEX:2188,
BIRNLEX:2194,
BIRNLEX:2198,
BIRNLEX:2203 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:birnlexDefinition "A behavioral paradigm in which a subject views stimuli (words, pictures, letters) and are instructed to memorize them."^^xsd:string ;
NIFRID:bonfireID "BF_T0000358"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Angie_Laird,
NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:hasExternalSource NIFRID:BrainMap.org .
BIRNLEX:2015 a owl:Class ;
rdfs:label "Unit"^^xsd:string ;
skos:prefLabel "Unit"^^xsd:string ;
NIFRID:createdDate "2007-03-09"^^xsd:string ;
NIFRID:modifiedDate "2007-03-09"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:tempDefinition "Uniform measurement standard used to characterize a quantitative value."^^xsd:string .
BIRNLEX:2016 a owl:Class ;
owl:deprecated true ;
rdfs:label "Investigator role"^^xsd:string ;
skos:prefLabel "Investigator role"^^xsd:string ;
rdfs:subClassOf owl:DeprecatedClass ;
NIFRID:createdDate "2006-07-15"^^xsd:string ;
NIFRID:modifiedDate "2008-02-21"^^xsd:string ;
NIFRID:birnlexDefinition "Role played by individual investigators during the course of an investigation"^^xsd:string ;
NIFRID:hasFormerParentClass <http://obi.sourceforge.net/ontology/OBI.owl#OBI_54> ;
NIFRID:isReplacedByClass BIRNLEX:11015 .
BIRNLEX:2017 a owl:Class ;
rdfs:label "Classical conditioning paradigm"^^xsd:string ;
skos:prefLabel "Classical conditioning paradigm"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2075 ;
owl:disjointWith BIRNLEX:2024,
BIRNLEX:2047,
BIRNLEX:2088,
BIRNLEX:2142,
BIRNLEX:2176,
BIRNLEX:2181,
BIRNLEX:2188,
BIRNLEX:2194,
BIRNLEX:2198,
BIRNLEX:2203 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:birnlexDefinition "A behavioral paradigm in which subjects are presented with paired stimuli (usually involving presentation of an eye puff with an auditory tone) in an attempt to study associative learning."^^xsd:string ;
NIFRID:bonfireID "BF_T0000343"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Angie_Laird,
NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:hasExternalSource NIFRID:BrainMap.org .
BIRNLEX:2018 a owl:Class ;
rdfs:label "Assessment"^^xsd:string ;
skos:prefLabel "Assessment"^^xsd:string ;
NIFRID:synonym "test"^^xsd:string ;
skos:definition """* A procedure for critical evaluation; a means of determining the presence, quality, or truth of something. (NCI)
* Administration of tests, and analysis and interpretation of test scores in order to measure differences between individuals or between test performances of the same individual on different occasions. (PSY)"""^^xsd:string ;
rdfs:subClassOf BIRNLEX:11022 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:birnlexDefinition "An assessment is the process of evaluating organism attributes via an assessment instrument that results in an assessment measure which may be interpreted in a phenotypical domain."^^xsd:string ;
NIFRID:bonfireID "BF_T0000276"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:curation_complete ;
NIFRID:UmlsCui "C0039593"^^xsd:string .
BIRNLEX:2019 a owl:Class ;
rdfs:label "Tesla"^^xsd:string ;
skos:prefLabel "Tesla"^^xsd:string ;
NIFRID:synonym "T"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2015 ;
NIFRID:createdDate "2007-03-09"^^xsd:string ;
NIFRID:modifiedDate "2007-03-09"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug,
NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:tempDefinition "The preferred unit of magnetic flux density. One tesla is equal to 10,000 gauss. The Tesla unit value is defined as a field strength of 1 Weber per meter 2, where 1 Weber represents 1 x 108 (100,000,000) flux lines. Named after the 20th century, Serbian-American electrical engineer and inventor, Nikola Tesla."^^xsd:string .
BIRNLEX:2020 a owl:Class ;
owl:deprecated true ;
rdfs:label "Sham operated control group"^^xsd:string ;
skos:prefLabel "Sham operated control group"^^xsd:string ;
rdfs:subClassOf owl:DeprecatedClass ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2007-08-24"^^xsd:string ;
NIFRID:birnlexDefinition "A subject group that has received an identical surgical procedure to the experimental group but without the treatment under study."^^xsd:string ;
NIFRID:bonfireID "BF_T0000150"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Maryann_Martone ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:hasFormerParentClass <http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlexInvestigation_174> ;
NIFRID:isReplacedByClass BIRNLEX:11046 .
BIRNLEX:2021 a owl:Class ;
rdfs:label "Cognitive assessment"^^xsd:string ;
skos:prefLabel "Cognitive assessment"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2018 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:hasExternalSource NIFRID:UMLS ;
NIFRID:UmlsCui "C0870300"^^xsd:string .
BIRNLEX:2022 a owl:Class ;
rdfs:label "Talairach-Tournoux Atlas"^^xsd:string ;
skos:prefLabel "Talairach-Tournoux Atlas"^^xsd:string ;
rdfs:subClassOf NLXRES:090904 ;
owl:versionInfo "125100"^^xsd:string ;
NIFRID:createdDate "2007-03-09"^^xsd:string ;
NIFRID:modifiedDate "2007-03-09"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug,
NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:tempDefinition "A standardized brain atlas published by Talairach and Tournoux."^^xsd:string .
BIRNLEX:2023 a owl:Class ;
rdfs:label "Genotype"^^xsd:string ;
skos:prefLabel "Genotype"^^xsd:string ;
rdfs:subClassOf NIFRID:birnlexLimboClass ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug,
NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:definition_incomplete ;
NIFRID:hasFormerParentClass <http://obi.sourceforge.net/ontology/OBI.owl#OBI_3> .
BIRNLEX:2024 a owl:Class ;
rdfs:label "Serial item recognition paradigm"^^xsd:string ;
skos:prefLabel "Serial item recognition paradigm"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2083 ;
owl:disjointWith BIRNLEX:2047,
BIRNLEX:2088,
BIRNLEX:2142,
BIRNLEX:2176,
BIRNLEX:2181,
BIRNLEX:2188,
BIRNLEX:2194,
BIRNLEX:2198,
BIRNLEX:2203 ;
skos:changeNote "moved under the new Item_recognition_paradigm class (BB)."^^xsd:string ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:acronym "SIRP"^^xsd:string ;
NIFRID:birnlexDefinition "A behavioral paradigm that involves the presentation of sets of target items and the recognition of some of those items vs unfamiliar items presented serially (probe items)."^^xsd:string ;
NIFRID:bonfireID "BF_T0000219"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug,
NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2025 a owl:Class ;
rdfs:label "Behavioral assessment"^^xsd:string ;
skos:prefLabel "Behavioral assessment"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2018 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2026 a owl:Class ;
rdfs:label "Verbal fluency assessment"^^xsd:string ;
skos:prefLabel "Verbal fluency assessment"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2021 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:birnlexDefinition "Is an assessment that measures the ability of an individual to name as many items as possible within a specified amount of time. May measure letter (or phonemic, e.g., F-A-S) or category (e.g., animals) fluency."^^xsd:string ;
NIFRID:bonfireID "BF_T0000225"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Christine_Fennema-Notestine ;
NIFRID:hasCurationStatus NIFRID:pending_final_vetting .
BIRNLEX:2027 a owl:Class ;
rdfs:label "Monoclonal antibody"^^xsd:string ;
skos:prefLabel "Monoclonal antibody"^^xsd:string ;
NIFRID:synonym "Monoclonal"^^xsd:string,
"Monoclonal antibodies"^^xsd:string ;
NIFRID:abbrev "mAb"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2110 ;
NIFRID:createdDate "2006-05-15"^^xsd:string ;
NIFRID:modifiedDate "2007-03-05"^^xsd:string ;
NIFRID:bonfireID "BF_T0000034"^^xsd:string ;
NIFRID:externallySourcedDefinition "An antibody produced by clones of cells such as those isolated after hybridization of activated B lymphocytes with neoplastic cells. These hybrids are often referred to as hybridomas. (MeSH)"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Maryann_Martone ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2028 a owl:Class ;
rdfs:label "2D spatial image"^^xsd:string ;
skos:prefLabel "2D spatial image"^^xsd:string ;
rdfs:subClassOf BIRNLEX:11005 ;
NIFRID:createdDate "2007-03-09"^^xsd:string ;
NIFRID:modifiedDate "2007-03-09"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:tempDefinition "A type of image where pixel values represent a quantity measure over 2 spatial dimensions."^^xsd:string ;
skos:altLabel "2D spatial image"^^xsd:string .
BIRNLEX:2029 a owl:Class ;
rdfs:label "Confocal microscope"^^xsd:string ;
skos:prefLabel "Confocal microscope"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2112 ;
NIFRID:createdDate "2006-05-15"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2030 a owl:Class ;
rdfs:label "Neuropsychological assessment"^^xsd:string ;
skos:prefLabel "Neuropsychological assessment"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2018 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:birnlexDefinition "An assessment of neurological function associated with certain behaviors often used in diagnosing brain dysfunction or damage and central nervous system disorders or injury. (adapted from MeSH)"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Christine_Fennema-Notestine ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:hasExternalSource NIFRID:UMLS ;
NIFRID:UmlsCui "C0027902"^^xsd:string .
BIRNLEX:2031 a owl:Class ;
rdfs:label "Sternberg paradigm"^^xsd:string ;
skos:prefLabel "Sternberg paradigm"^^xsd:string ;
NIFRID:synonym "delayed match-to-sample paradigm"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2083 ;
skos:editorialNote "Brain Map uses this designtation only when letters are used as stimuli; however there is some confusion about whether other stimuli may be used in the Sternberg paradigm"^^xsd:string ;
skos:changeNote "moved under the new Item_recognition_paradigm class (BB)."^^xsd:string ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:acronym "DMTS"^^xsd:string ;
NIFRID:birnlexDefinition "A delayed matching-to-sample paradigm that uses letters or numbers as stimuli (Sternberg S. High-speed scanning in human memory. Science. 1966 Aug 5;153(736):652-4)."^^xsd:string ;
NIFRID:bonfireID "BF_T0000359"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Angie_Laird,
NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:pending_final_vetting ;
NIFRID:hasExternalSource NIFRID:BrainMap.org ;
NIFRID:pendingActionNote "Need to clarify what a Sternberg paradigm involves"^^xsd:string .
BIRNLEX:2032 a owl:Class ;
rdfs:label "Polyclonal antibody"^^xsd:string ;
skos:prefLabel "Polyclonal antibody"^^xsd:string ;
NIFRID:synonym "Polyclonal"^^xsd:string,
"Polyclonal antibodies"^^xsd:string ;
NIFRID:abbrev "polyAb"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2110 ;
NIFRID:createdDate "2006-05-15"^^xsd:string ;
NIFRID:modifiedDate "2007-03-05"^^xsd:string ;
NIFRID:bonfireID "BF_T0000035"^^xsd:string ;
NIFRID:externallySourcedDefinition "Immunoglobulins which arise from more than one clone of B-lymphocyte cells. Polyclonal antibodies are usually present when antisera from a conventional immunization is used. (www.brendan.com/Glossary.htm)"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Maryann_Martone ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2033 a owl:Class ;
rdfs:label "MRI 3D image"^^xsd:string ;
skos:prefLabel "MRI 3D image"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2165 ;
NIFRID:createdDate "2007-03-07"^^xsd:string ;
NIFRID:modifiedDate "2007-03-07"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:tempDefinition "A type of 3D image collected using an MRI device."^^xsd:string ;
skos:altLabel "MRI 3D image"^^xsd:string .
BIRNLEX:2034 a owl:Class ;
rdfs:label "Biochemical specimen preparation protocol"^^xsd:string ;
skos:prefLabel "Biochemical specimen preparation protocol"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2123 ;
skos:changeNote "Changed name from the ambiguous Biochemical_protocol to Biochemical_specimen_preparation_protocol (BB)."^^xsd:string ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2007-03-05"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug,
NIFRID:BIRN_OTF .
BIRNLEX:2035 a owl:Class ;
rdfs:label "Laser scanning confocal microscope"^^xsd:string ;
skos:prefLabel "Laser scanning confocal microscope"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2029 ;
NIFRID:createdDate "2006-05-15"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:bonfireID "BF_T0000022"^^xsd:string ;
NIFRID:externallySourcedDefinition "A confocal microscope that that uses a laser that is scanned in a raster pattern across the specimen to excite fluorescence or otherwise visualize the specimen one point at a time. Out of focus light is removed by an aperture inserted in the transmitted light path; 2 or 3 dimensional likenesses are then reconstructed by computer; relatively noninvasive, applicable to thick sections and living tissue. (CSP)"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Maryann_Martone ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:hasDefinitionSource NIFRID:UMLS_defSource .
BIRNLEX:2036 a owl:Class ;
rdfs:label "Visual oddball paradigm"^^xsd:string ;
skos:prefLabel "Visual oddball paradigm"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2176 ;
owl:disjointWith BIRNLEX:2161 ;
NIFRID:birnlexDefinition "An oddball discrimination paradigm where subjects view letters or objects and indicate when they see a target stimulus."^^xsd:string ;
NIFRID:bonfireID "BF_T0000340"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Angie_Laird,
NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:hasExternalSource NIFRID:BrainMap.org .
BIRNLEX:2037 a owl:Class ;
rdfs:label "Contrast agent"^^xsd:string ;
skos:prefLabel "Contrast agent"^^xsd:string ;
rdfs:subClassOf BIRNLEX:11033 ;
NIFRID:createdDate "2006-05-15"^^xsd:string ;
NIFRID:modifiedDate "2007-03-05"^^xsd:string ;
NIFRID:externallySourcedDefinition "A chemical substance or formulation regulated as a medical device that is delivered by various routes of administration into the body of a patient undergoing a diagnostic imaging procedure to temporarily enable or enhance the capability of a specified diagnostic imaging. (UMD)"^^xsd:string,
"Substances used in radiography that allow visualization of certain tissues. (CSP)"^^xsd:string,
"Substances used in radiography that allow visualization of certain tissues. (MeSH)"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug,
NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:UmlsCui "C0009924"^^xsd:string .
BIRNLEX:2038 a owl:Class ;
rdfs:label "Left handedness"^^xsd:string ;
skos:prefLabel "Left handedness"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2178 ;
NIFRID:createdDate "2006-04-04"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:birnlexDefinition "A behavioral phenotype where the subject preferentially uses the left hand for tasks requiring the use of a single hand or a dominant hand."^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Maryann_Martone ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:hasExternalSource NIFRID:UMLS ;
NIFRID:UmlsCui "C0234418"^^xsd:string .
BIRNLEX:2039 a owl:Class ;
rdfs:label "Microscopy contrast enhancement protocol"^^xsd:string ;
skos:prefLabel "Microscopy contrast enhancement protocol"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2123 ;
skos:editorialNote "Should really be importing the FlyBase biological imaging ontology, now that it is so mature. Unfortunately, this is currently only available in OBO format. It really needs to be incorporated directly or through import into OBI (BB:2006-10-10)."^^xsd:string ;
skos:changeNote "Changed preferred Label from Contrast_enhancement_protocol to Microscopy_contrast_enhancement_protocol."^^xsd:string ;
NIFRID:createdDate "2006-05-15"^^xsd:string ;
NIFRID:modifiedDate "2007-03-05"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug,
NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:nifID "_7_6"^^xsd:string .
BIRNLEX:2040 a owl:Class ;
rdfs:label "MRI 2D image"^^xsd:string ;
skos:prefLabel "MRI 2D image"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2028 ;
NIFRID:createdDate "2007-03-07"^^xsd:string ;
NIFRID:modifiedDate "2007-03-07"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:tempDefinition "A type of 2D image collected using an MRI device."^^xsd:string ;
skos:altLabel "MRI 2D image"^^xsd:string .
BIRNLEX:2041 a owl:Class ;
rdfs:label "Electron microscope"^^xsd:string ;
skos:prefLabel "Electron microscope"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2106 ;
NIFRID:createdDate "2006-05-15"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:UmlsCui "C0262879"^^xsd:string .
BIRNLEX:2042 a owl:Class ;
rdfs:label "Ambidextrous"^^xsd:string ;
skos:prefLabel "Ambidextrous"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2178 ;
NIFRID:createdDate "2006-04-04"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:birnlexDefinition "A laterality measure where there is no overall dominance in the use of right or left hand in the performance of tasks that require one hand or a dominant hand."^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Maryann_Martone ;
NIFRID:hasCurationStatus NIFRID:pending_final_vetting ;
NIFRID:hasExternalSource NIFRID:UMLS ;
NIFRID:UmlsCui "C0023114"^^xsd:string .
BIRNLEX:2043 a owl:Class ;
rdfs:label "Fixation protocol"^^xsd:string ;
skos:prefLabel "Fixation protocol"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2123 ;
skos:editorialNote "Should look to FBbi for content here, hopefully brought into BIRNLex-Main via import."^^xsd:string ;
NIFRID:createdDate "2006-05-15"^^xsd:string ;
NIFRID:modifiedDate "2007-03-05"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2044 a owl:Class ;
rdfs:label "Scanning electron microscope"^^xsd:string ;
skos:prefLabel "Scanning electron microscope"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2041 ;
NIFRID:createdDate "2006-05-15"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:UmlsCui "C0262878"^^xsd:string .
BIRNLEX:2045 a owl:Class ;
rdfs:label "Cognitive phenotype"^^xsd:string ;
skos:prefLabel "Cognitive phenotype"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2087 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2046 a owl:Class ;
rdfs:label "Immunolabeling protocol"^^xsd:string ;
skos:prefLabel "Immunolabeling protocol"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2123 ;
NIFRID:createdDate "2006-05-15"^^xsd:string ;
NIFRID:modifiedDate "2007-03-05"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2047 a owl:Class ;
rdfs:label "Sensorimotor paradigm"^^xsd:string ;
skos:prefLabel "Sensorimotor paradigm"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2075 ;
owl:disjointWith BIRNLEX:2088,
BIRNLEX:2142,
BIRNLEX:2176,
BIRNLEX:2181,
BIRNLEX:2188,
BIRNLEX:2194,
BIRNLEX:2198,
BIRNLEX:2203 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:birnlexDefinition "A behavioral paradigm that requires the subject respond to stimuli that are dissimilar to the majority of stimuli presented"^^xsd:string ;
NIFRID:bonfireID "BF_T0000266"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:curation_complete .
BIRNLEX:2048 a owl:Class ;
rdfs:label "Transmission electron microscope"^^xsd:string ;
skos:prefLabel "Transmission electron microscope"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2041 ;
NIFRID:createdDate "2006-05-15"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Maryann_Martone ;
NIFRID:hasCurationStatus NIFRID:definition_incomplete ;
NIFRID:UmlsCui "C0262880"^^xsd:string .
BIRNLEX:2049 a owl:Class ;
rdfs:label "Intramuscular injection"^^xsd:string ;
skos:prefLabel "Intramuscular injection"^^xsd:string ;
NIFRID:abbrev "i.m."^^xsd:string ;
rdfs:subClassOf BIRNLEX:2135 ;
owl:disjointWith BIRNLEX:2057,
BIRNLEX:2136,
BIRNLEX:2144,
BIRNLEX:2150 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:externallySourcedDefinition "administration of a drug via injection into a muscle. (CSP)"^^xsd:string,
"Forceful administration into a muscle of liquid medication, nutrient, or other fluid through a hollow needle piercing the muscle and any tissue covering it. (MeSH)"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug,
NIFRID:Maryann_Martone ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:UmlsCui "C0021492"^^xsd:string .
BIRNLEX:2050 a owl:Class ;
rdfs:label "Verbal fluency"^^xsd:string ;
skos:prefLabel "Verbal fluency"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2045 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:birnlexDefinition "A cognitive phenotype measuring an individual's facility with producing spoken language."^^xsd:string ;
NIFRID:bonfireID "BF_T0000225"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Christine_Fennema-Notestine ;
NIFRID:hasCurationStatus NIFRID:curation_complete .
BIRNLEX:2051 a owl:Class ;
rdfs:label "Intracellular injection protocol"^^xsd:string ;
skos:prefLabel "Intracellular injection protocol"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2039 ;
owl:disjointWith BIRNLEX:2241,
BIRNLEX:2242,
BIRNLEX:2244,
BIRNLEX:2249 ;
NIFRID:createdDate "2006-05-15"^^xsd:string ;
NIFRID:modifiedDate "2007-03-05"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2052 a owl:Class ;
rdfs:label "Duration"^^xsd:string ;
skos:prefLabel "Duration"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2175 ;
NIFRID:createdDate "2007-03-09"^^xsd:string ;
NIFRID:modifiedDate "2007-03-09"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:tempDefinition "A type of temporal characteristic value where the time measured is that between the occurance of two events."^^xsd:string .
BIRNLEX:2053 a owl:Class ;
owl:deprecated true ;
rdfs:label "Free recall ability"^^xsd:string ;
skos:prefLabel "Free recall ability"^^xsd:string ;
rdfs:subClassOf owl:DeprecatedClass ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2007-08-24"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug,
NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:hasFormerParentClass <http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlexInvestigation_202> .
BIRNLEX:2054 a owl:Class ;
rdfs:label "Memory phenotype"^^xsd:string ;
skos:prefLabel "Memory phenotype"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2087 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2055 a owl:Class ;
rdfs:label "Staining protocol"^^xsd:string ;
skos:prefLabel "Staining protocol"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2039 ;
NIFRID:createdDate "2006-05-15"^^xsd:string ;
NIFRID:modifiedDate "2007-03-05"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:nifID "_7_6.2"^^xsd:string .
BIRNLEX:2056 a owl:Class ;
owl:deprecated true ;
rdfs:label "Body weight"^^xsd:string ;
skos:prefLabel "Body weight"^^xsd:string ;
rdfs:subClassOf owl:DeprecatedClass ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2007-08-24"^^xsd:string ;
NIFRID:birnlexDefinition "A measure of the mass of the entire body of the organism."^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug,
NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:hasFormerParentClass <http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlexInvestigation_204> ;
NIFRID:UmlsCui "C0005910"^^xsd:string .
BIRNLEX:2057 a owl:Class ;
rdfs:label "Subthelial injection"^^xsd:string ;
skos:prefLabel "Subthelial injection"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2135 ;
owl:disjointWith BIRNLEX:2136,
BIRNLEX:2144,
BIRNLEX:2150 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Maryann_Martone ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2058 a owl:Class ;
rdfs:label "Blood Oxygenation Level Dependent signal"^^xsd:string ;
skos:prefLabel "Blood Oxygenation Level Dependent signal"^^xsd:string ;
NIFRID:synonym "BOLD"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2006 ;
NIFRID:createdDate "2007-03-09"^^xsd:string ;
NIFRID:modifiedDate "2007-03-09"^^xsd:string ;
NIFRID:definingCitation "PMID:1948051"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug,
NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:tempDefinition "Haemoglobin is diamagnetic when oxygenated but paramagnetic when deoxygenated. Local changes in the relative concentration of oxyhemoglobin and deoxyhemoglobin and changes in local cerebral blood volume in addition, mean that the magnetic resonance (MR) signal of blood is slightly different depending on the level of oxygenation. Higher BOLD signal intensities arise from decreases in the concentration of deoxygenated hemoglobin since the blood magnetic susceptibility now more closely matches the tissue magnetic susceptibility. (from Wikipedia)."^^xsd:string .
BIRNLEX:2059 a owl:Class ;
rdfs:label "Collaborator"^^xsd:string ;
skos:prefLabel "Collaborator"^^xsd:string ;
rdfs:subClassOf BIRNLEX:11015 ;
NIFRID:createdDate "2006-07-15"^^xsd:string ;
NIFRID:modifiedDate "2007-03-05"^^xsd:string ;
NIFRID:birnlexDefinition "Participant in a research project or experiment, who is not the primary investigator, who performs portions of the research project or who makes significant intellectual contributions to the research project."^^xsd:string ;
NIFRID:bonfireID "BF_T0000184"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Maryann_Martone ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2060 a owl:Class ;
owl:deprecated true ;
rdfs:label "Organism attribute"^^xsd:string ;
skos:prefLabel "Organism attribute"^^xsd:string ;
rdfs:subClassOf owl:DeprecatedClass ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2007-08-24"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug,
NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:hasFormerParentClass <http://ontology.neuinfo.org/NIF/DigitalEntities/NIF-Investigation.owl#birnlexInvestigation_199> ;
NIFRID:pendingActionNote "What is this and how would it differ from Phenotype_attribute (BB)?"^^xsd:string .
BIRNLEX:2061 a owl:Class ;
rdfs:label "Mild cognitive impairment"^^xsd:string ;
skos:prefLabel "Mild cognitive impairment"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2054 ;
owl:disjointWith BIRNLEX:2071 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:birnlexDefinition "An impairment in cognition, specifically memory performance, that is frequently associated with aging and, in some cases, pre-clinical Alzheimer's disease. The degree and type of impairment distinguishes MCI from dementia in that MCI patients exhibit deficits in tests of memory, but perform normally on standard tests measuring other cognitive domains."^^xsd:string ;
NIFRID:bonfireID "BF_T0000227"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Christine_Fennema-Notestine ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2062 a owl:Class ;
rdfs:label "TA"^^xsd:string ;
skos:prefLabel "TA"^^xsd:string ;
NIFRID:synonym "MRI acquitision time"^^xsd:string ;
skos:definition "The time between the initial pulse and the end of the data acquisition. Note that there may be an additional delay placed at the end of the acquisition to achieve a certain repetition time (TR)"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2052 ;
NIFRID:createdDate "2007-03-09"^^xsd:string ;
NIFRID:modifiedDate "2007-03-09"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug,
NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:tempDefinition "The time the MRI scanner takes to collect an MRI image."^^xsd:string .
BIRNLEX:2063 a owl:Class ;
owl:deprecated true ;
rdfs:label "Sham operated role"^^xsd:string ;
skos:prefLabel "Sham operated role"^^xsd:string ;
rdfs:subClassOf owl:DeprecatedClass ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2008-02-21"^^xsd:string ;
NIFRID:birnlexDefinition "A subject group that has received an identical surgical procedure to the experimental group but without the treatment under study."^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug,
NIFRID:Maryann_Martone ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:hasFormerParentClass BIRNLEX:11018 ;
NIFRID:isReplacedByClass BIRNLEX:11046 .
BIRNLEX:2064 a owl:Class ;
rdfs:label "Physical phenotype"^^xsd:string ;
skos:prefLabel "Physical phenotype"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2087 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2065 a owl:Class ;
rdfs:label "Protein expression phenotype"^^xsd:string ;
skos:prefLabel "Protein expression phenotype"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2081 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:BIRN_OTF ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2066 a owl:Class ;
rdfs:label "Experimental paradigm"^^xsd:string ;
skos:prefLabel "Experimental paradigm"^^xsd:string ;
rdfs:subClassOf BIRNLEX:11010 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:bonfireID "BF_T0000261"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2067 a owl:Class ;
rdfs:label "FMRIB Software Library"^^xsd:string ;
skos:prefLabel "FMRIB Software Library"^^xsd:string ;
NIFRID:synonym "FSL"^^xsd:string ;
rdfs:subClassOf NLXINV:090907 ;
NIFRID:createdDate "2007-03-09"^^xsd:string ;
NIFRID:modifiedDate "2007-03-09"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug,
NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:hasFormerParentClass BIRNLEX:2190 ;
NIFRID:tempDefinition "FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data (http://www.fmrib.ox.ac.uk/fsl/)."^^xsd:string ;
skos:altLabel "FMRIB Software Library"^^xsd:string .
BIRNLEX:2068 a owl:Class ;
rdfs:label "Project leader"^^xsd:string ;
skos:prefLabel "Project leader"^^xsd:string ;
rdfs:subClassOf BIRNLEX:11015 ;
NIFRID:createdDate "2006-07-15"^^xsd:string ;
NIFRID:modifiedDate "2007-03-05"^^xsd:string ;
NIFRID:birnlexDefinition "Participant in a research project, who may or may not be the principal investigator, who assumes the responsiblity for completion of a project. Responsibilities may include research design, performance of experiments or supervision of other experimenters and communication of results."^^xsd:string ;
NIFRID:bonfireID "BF_T0000183"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Maryann_Martone ;
NIFRID:hasCurationStatus NIFRID:uncurated .
BIRNLEX:2069 a owl:Class ;
rdfs:label "Dynamic causal modeling"^^xsd:string ;
skos:prefLabel "Dynamic causal modeling"^^xsd:string ;
NIFRID:abbrev "DCM"^^xsd:string ;
rdfs:subClassOf BIRNLEX:11008 ;
NIFRID:createdDate "2007-03-07"^^xsd:string ;
NIFRID:modifiedDate "2007-03-07"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug,
NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:tempDefinition "Dynamic Causal Modeling: As published by Friston, Harrison, and Penny (Neuroimage, 2003, 19, 1273-1302), this is a method for \"identifying non-linear input-state-output systems\", as applied to determining effective connectivity in fMRI data. The emphasis is on determining the effects of the experimental inputs on the coupling or co-activations of various brain regions (psychophysiological interactions), rather than the effects of the experimental inputs on the activation of each brain region separately."^^xsd:string .
BIRNLEX:2070 a owl:Class ;
rdfs:label "TE"^^xsd:string ;
skos:prefLabel "TE"^^xsd:string ;
NIFRID:synonym "Echo time"^^xsd:string,
"MRI echo time"^^xsd:string ;
skos:definition "The time interval between excitation and data acquisition of the center of k-space. This is also referred to as echo time and typically measured in units of milliseconds. (Huettel, Song, & McCarthy, 2004)."^^xsd:string ;
rdfs:subClassOf BIRNLEX:2052 ;
NIFRID:createdDate "2007-03-09"^^xsd:string ;
NIFRID:modifiedDate "2007-03-09"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:Bill_Bug,
NIFRID:Jessica_Turner ;
NIFRID:hasCurationStatus NIFRID:uncurated ;
NIFRID:tempDefinition "This is an imaging parameter which helps determine image contrast. It represents the time in milliseconds between the application of the 90degree pulse and the peak of the echo signal in Spin Echo and Inversion Recovery pulse sequences"^^xsd:string .
BIRNLEX:2071 a owl:Class ;
rdfs:label "Working memory phenotype"^^xsd:string ;
skos:prefLabel "Working memory phenotype"^^xsd:string ;
rdfs:subClassOf BIRNLEX:2054 ;
NIFRID:createdDate "2006-06-01"^^xsd:string ;
NIFRID:modifiedDate "2006-10-11"^^xsd:string ;
NIFRID:hasBirnlexCurator NIFRID:BIRN_OTF ;