forked from diffpy/diffpy.github.io
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathabbreviations.txt
274 lines (222 loc) · 11.3 KB
/
abbreviations.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
.. vim: set ft=rst:
.. Named web links -----------------------------------------------------
.. |anaconda-download| replace:: https://www.anaconda.com/download
.. _anaconda-download: https://www.anaconda.com/download
.. _diffpy-users: https://groups.google.com/d/forum/diffpy-users
.. _ctv-xpdfsuite: http://innovation.columbia.edu/technologies/m11-120
.. Citations -----------------------------------------------------------
.. |citeJuhasJac13| replace::
P. Juhás and T. Davis, C. L. Farrow, S. J. L. Billinge, `PDFgetX3:
A rapid and highly automatable program for processing powder
diffraction data into total scattering pair distribution functions
<http://scripts.iucr.org/cgi-bin/paper?S0021889813005190>`__,
*J. Appl. Crystallogr.* **46**, 560-566 (2013)
|downloadJuhasJac13|
.. |downloadJuhasJac13| image:: /images/pdficon_small.png
:target: /doc/pdfgetx/Juhas-jac-2013.pdf
.. |citeFarrowJpcm07| replace::
C. L. Farrow, P. Juhás, J. W. Liu, D. Bryndin, E. S. Božin, J. Bloch,
Th. Proffen and S. J. L. Billinge, `PDFfit2 and PDFgui: computer
programs for studying nanostructure in crystals
<http://iopscience.iop.org/0953-8984/19/33/335219/>`__,
*J. Phys.: Condens. Mat.* **19**, 335219 (2007)
|downloadFarrowJpcm07|
.. |downloadFarrowJpcm07| image:: /images/pdficon_small.png
:target: /doc/pdfgui/Farrow-jpcm-2007.pdf
.. |citeProffenJac99| replace::
Th. Proffen and S. J. L. Billinge, `PDFFIT a program for full profile
structural refinement of the atomic pair distribution function
<http://journals.iucr.org/j/issues/1999/03/00/gl0603/>`__,
*J. Appl. Crystallogr.* **32**, 572 (1999)
|downloadProffenJac99|
.. |downloadProffenJac99| image:: /images/pdficon_small.png
:target: /doc/pdffit/Proffen-jac-1999.pdf
.. |DiffPyCMI| replace::
:doc:`DiffPy-CMI </products/diffpycmi/index>`
.. |citeShiPRL14| replace:: Chenyang Shi, Majid Beidaghi, Michael
Naguib, Olha Mashtalir, Yury Gogotsi, and Simon J. L. Billinge,
|ShiPRL14title|_,
*Phys. Rev. Lett.* **112**, 125501 (2014).
.. |ShiPRL14title| replace::
Structure of nanocrystalline Ti\ :sub:`3`\ C\ :sub:`2` MXene using
atomic pair distribution function
.. _ShiPRL14title: http://link.aps.org/doi/10.1103/PhysRevLett.112.125501
.. |citeFarrowJac14| replace::
Christopher L. Farrow, Chenyang Shi, Pavol Juhás, Xiaogang Peng, and
Simon J. L. Billinge, `Robust structure and morphology parameters for
CdS nanoparticles by combining small angle X-ray scattering and atomic
pair distribution function data in a complex modeling framework
<http://dx.doi.org/10.1107/S1600576713034055>`__,
*J. Appl. Crystallogr.* **47**, 561-565 (2014).
.. |citeAbeykoonArxiv14| replace::
Milinda Abeykoon, Hefei Hu, Lijun Wu, Yimei Zhu, and Simon J. L.
Billinge, `Calibration and data collection protocols for reliable
lattice parameter values in electron pair distribution function (ePDF)
studies <http://arxiv.org/abs/1401.1850>`__, *arXiv*, 1401.1850 (2014).
.. |citeChoiNanol14| replace::
Joshua J. Choi, Xiaohao Yang, Zachariah M. Norman, Simon J. L.
Billinge, and Jonathan S. Owen, `Structure of methylammonium lead
iodide on mesoporous titanium dioxide: active material in high
performance metal-organic solar cells
<http://pubs.acs.org/doi/abs/10.1021/nl403514x>`__, *Nano Lett.*
**14**, 127 (2014).
.. |citeJacquesNc13| replace::
Simon D. M. Jacques, Marco Di Michiel, Simon A. J. Kimber, Xiaohao
Yang, Robert J. Cernik, Andrew M. Beale, and Simon J. L. Billinge,
`Pair distribution function computed tomography
<http://dx.doi.org/10.1038/ncomms3536>`__,
*Nat. Commun.* **4**, 2536 (2013).
.. |citeDavisCgd13| replace::
Timur Davis, Matthew Johnson, and Simon J. L. Billinge, `Towards
phase quantification at the nanoscale using the total scattering pair
distribution function (TSPDF) method: recrystallization of cryomilled
sulfamerazine <http://dx.doi.org/10.1021/cg400179p>`__,
*Cryst. Growth Des.* **13**, 4239–4244 (2013).
.. |citeYangPccp13| replace::
Xiaohao Yang, Ahmad S. Masadeh, James R. McBride, Emil S. Bozin,
Sandra J. Rosenthal, and Simon J. L. Billinge, `Confirmation of
disordered structure of ultrasmall CdSe nanoparticles from X-ray
atomic pair distribution function analysis
<http://dx.doi.org/10.1039/C3CP00111C>`__,
*Phys. Chem. Chem. Phys.* **15**, 8480 (2013).
.. |citeFarrowJacs13| replace::
Christopher L. Farrow, D. Kwabena Bediako, Yogesh Surendranath,
Daniel G. Nocera, and Simon J. L. Billinge, `Intermediate-range
structure of self-assembled cobalt-based oxygen evolving catalysts
<http://dx.doi.org/10.1021/ja401276f>`__,
*J. Am. Chem. Soc.* **135**, 6403-6406 (2013).
.. |citeTyrstedAcie12| replace::
Christoffer Tyrsted, Kirsten M. Ø. Jensen, Espen D. Bøjesen,
Nina Lock, Mogens Christensen, Simon J. L. Billinge and Bo
B. Iversen, `Understanding the formation and evolution of ceria
nanoparticles under hydrothermal conditions
<http://dx.doi.org/10.1002/anie.201204747>`__,
*Angew. Chem. Int. Edit.* **51**, 9030-9033 (2012).
.. |citeJensenJacs12| replace::
Kirsten M. Ø. Jensen, Mogens Christensen, Pavol Juhás, Christoffer
Tyrsted, Espen D. Bøjesen, Nina Lock, Simon J. L. Billinge, and Bo B.
Iversen, `Revealing the mechanisms behind SnO2 nanoparticle formation
and growth during hydrothermal synthesis: an in situ total scattering
study <http://dx.doi.org/10.1021/ja300978f>`__,
*J. Am. Chem. Soc.* **134**, 6785 (2012).
.. |citeMengqiangZhuGca12| replace::
Mengqiang Zhu, Christopher L. Farrow, Jeffrey E. Post, Kenneth J. T.
Livi, Simon J. L. Billinge, Matthew Ginder-Vogel and Donald L.
Sparks, `Structural study of biotic and abiotic poorly-crystalline
manganese oxides using atomic pair distribution function analysis
<http://dx.doi.org/10.1016/j.gca.2011.12.006>`__,
*Geochim. Cosmochim. Ac.* **81**, 39-55 (2012).
.. |citeMengqiangZhuESTL14| replace::
Mengqiang Zhu, Paul Northrup, Chenyang Shi, Simon J. L. Billinge,
Donald L. Sparks and Glenn A. Waychunas,
`The structure of sulfate adsorption complexes on ferrihydrite
<http://pubs.acs.org/doi/abs/10.1021/ez400052r>`__,
*Environ. Sci. Technol. Lett.* **1**, 97-101 (2014).
.. |citeGhidiuCC14| replace::
Michael Ghidiu, Michael Naguib, Chenyang Shi, Olha Mashtalir, Limei
Pan, Bo Zhang, Jian Yang, Yury Gogotsi, Simon J. L. Billinge and
Michel W. Barsoum,
|GhidiuCC14title|_,
*Chem. Commun.* **50**, 9517-9520 (2014).
.. |GhidiuCC14title| replace::
Synthesis and charaterization of two-dimensional
Nb\ :sub:`4`\ C\ :sub:`3` (MXene)
.. _GhidiuCC14title: http://dx.doi.org/10.1039/C4CC03366C
.. |citeBeecherJacs14| replace::
Alexander N. Beecher, Xiaohao Yang, Joshua H. Palmer, Alexandra L.
LaGrassa, Pavol Juhás, Simon J. L. Billinge and Jonathan S. Owen,
`Atomic structures and gram scale synthesis of three tetrahedral
quantum dots
<http://pubs.acs.org/doi/abs/10.1021/ja503590h>`__,
*J. Am. Chem. Soc.* **136**, 10645-10653 (2014).
.. |citeDoanNguyenAcsn14| replace::
Vicky V. T. Doan-Nguyen, Simon A. J. Kimber, Diego Pontoni, Danielle
Reifsnyder Hickey, Benjamin T. Diroll, Xiaohao Yang, Marcel
Miglierini, Christopher B. Murray and Simon J. L. Billinge,
`Bulk metallic glass-like scattering signal in small metallic
nanoparticles <http://dx.doi.org/10.1021/nn501591g>`__,
*ACS Nano* **8**, 6163–6170 (2014).
.. |citePrillJac15| replace::
Dragica Prill, Pavol Juhás, Martin U. Schmidt and Simon J. L.
Billinge, `Modeling pair distribution functions (PDF) of organic
compounds: describing both intra- and intermolecular correlation
functions in calculated PDFs
<http://dx.doi.org/10.1107/S1600576714026454>`__,
*J. Appl. Crystallogr.* **48**, 171-178 (2015).
.. |citeTerbanNan15| replace::
Maxwell W. Terban, Matthew Johnson, Marco Di Michiel and Simon J. L.
Billinge, `Detection and characterization of nanoparticles in suspension at
low concentrations using the X-ray total scattering pair distribution
function technique
<http://dx.doi.org/10.1039/C4NR06486K>`__,
*Nanoscale* **7**, 5480 (2015).
.. |citeGranlundAca15| replace::
L. Granlund, S. J. L. Billinge and P. M. Duxbury,
`Algorithm for systematic peak extraction from atomic pair distribution
functions
<https://dx.doi.org/10.1107/S2053273315005276>`__,
*Acta Crystallogr. A* **71**, 392-409 (2015).
|downloadGranlundAca15|
.. |downloadGranlundAca15| image:: /images/pdficon_small.png
:target: /doc/srmise/Granlund-aca-2015.pdf
.. |citePrillAca16| replace::
Dragica Prill, Pavol Juhás, Simon J. L. Billinge and Martin U. Schmidt,
`Towards solution and refinement of organic crystal structures by
fitting to the atomic pair distribution function
<https://dx.doi.org/10.1107/S2053273315022457>`__,
*Acta Crystallogr. A* **72**, 62-72 (2016).
.. |citeJuhasAca15| replace::
P. Juhás, C. L. Farrow, X. Yang, K. R. Knox and S. J. L. Billinge,
`Complex modeling: a strategy and software program for combining
multiple information sources to solve ill posed structure and
nanostructure inverse problems
<http://dx.doi.org/10.1107/S2053273315014473>`__,
*Acta Crystallogr. A* **71**, 562-568 (2015).
|downloadJuhasJac15|
.. |downloadJuhasJac15| image:: /images/pdficon_small.png
:target: /doc/diffpy-cmi/Juhas-aca-2015.pdf
.. |citeTerbanCgd16| replace::
Maxwell W. Terban, Eugene Y. Cheung, Paul Krolikowski,
Simon J. L. Billinge,
`Recrystallization, phase composition, and local structure of
amorphous lactose from the total scattering pair distribution
function
<http://dx.doi.org/10.1021/acs.cgd.5b01100>`__,
*Cryst. Growth Des.* **16**, 210-220 (2016).
.. |citeFrandsenPrl16| replace::
Benjamin A. Frandsen, Michela Brunelli, Katharine Page,
Yasutomo J. Uemura, Julie B. Staunton, Simon J. L. Billinge,
|FrandsenPrl16title|_,
*Phys. Rev. Lett.* **116**, 197204 (2016).
.. |FrandsenPrl16title| replace::
Verification of Anderson Superexchange in MnO via magnetic pair
distribution function analysis and *ab initio* theory
.. _FrandsenPrl16title: http://link.aps.org/doi/10.1103/PhysRevLett.116.197204
.. |citeJensenNc16| replace::
Kirsten M. Ø. Jensen, Pavol Juhás, Marcus A. Tofanelli,
Christine L. Heinecke, Gavin Vaughan, Christopher J. Ackerson,
Simon J. L. Billinge,
|JensenNc16title|_,
*Nat. Commun.* **7**, 11859 (2016)
.. |JensenNc16title| replace::
Polymorphism in magic-sized Au\ :sub:`144`\ (SR)\ :sub:`60` clusters
.. _JensenNc16title: http://dx.doi.org/10.1038/ncomms11859
.. |citeShiJac18| replace::
C. Shi,
`xINTERPDF: a graphical user interface for analyzing
intermolecular pair distribution functions of organic compounds
from X-ray total scattering data
<https://doi.org/10.1107/S1600576718012359>`__,
*J. Appl. Crystallogr.* **51**, 1498-1499 (2018)
|downloadShiJac18|
.. |downloadShiJac18| image:: /images/pdficon_small.png
:target: /doc/xinterpdf/Shi-jac-2018.pdf
.. |citeJuhasJac18| replace::
P. Juhás, J. N. Louwen, L. van Eijck, E. T. C. Vogt, S. J. L. Billinge,
`PDFgetN3: atomic pair distribution functions from
neutron powder diffraction data using ad hoc corrections
<https://doi.org/10.1107/S1600576718010002>`__,
*J. Appl. Crystallogr.*, **51**, 1492--1497 (2018)
|downloadJuhasJac18|
.. |downloadJuhasJac18| image:: /images/pdficon_small.png
:target: /doc/pdfgetx/Juhas-jac-2018.pdf