ro-crate-metadata.json

{ "@context": [
  "https://w3id.org/ro/crate/1.2-DRAFT/context",
  { "@base": "https://www.researchobject.org/workflow-run-crate/profiles/0.6-DRAFT/process_run_crate/"}
  ],
  "@graph": [
  {
    "@id": "ro-crate-metadata.json",
    "@type": "CreativeWork",
    "license": { "@id": "http://spdx.org/licenses/CC0-1.0" },
    "conformsTo": {"@id": "https://w3id.org/ro/crate/1.2-DRAFT"},
    "about": {"@id": "https://w3id.org/ro/wfrun/process/0.6-DRAFT"}
  },  
  {
    "@id": "ro-crate-preview.html",
    "@type": "CreativeWork",
    "license": { "@id": "http://spdx.org/licenses/CC0-1.0" },
    "isBasedOn": {"@id": "ro-crate-metadata.json" },
    "name": "RO-Crate preview of the Process Run Crate profile",
    "encodingFormat": "text/html",
    "about": "https://w3id.org/ro/wfrun/process/0.6-DRAFT"
  },  
  {
    "@id": "https://w3id.org/ro/wfrun/process/0.6-DRAFT",
    "@type": ["Dataset","Profile"],
    "isProfileOf": [
        {"@id": "https://w3id.org/ro/crate/1.2-DRAFT"}
    ],
    "identifier": "https://w3id.org/ro/wfrun/process/0.6-DRAFT",
    "name": "Process Run Crate profile",
    "version": "0.6-DRAFT",
    "license": {
      "@id": "https://www.apache.org/licenses/LICENSE-2.0"
    },
    "author": [
     {"@id": "https://www.researchobject.org/workflow-run-crate/"}
    ],
    "hasPart": [
        { "@id": "index.html" },
        { "@id": "example1/" },
        { "@id": "https://www.researchobject.org/workflow-run-crate-paper/mapping/" },
        { "@id": "https://w3id.org/ro/terms/workflow-run#" },
        { "@id": "https://w3id.org/ro/terms/workflow-run" },
        { "@id": "https://gxy.io/GTN:T00343" },
        { "@id": "https://pypi.org/project/runcrate/" },
        { "@id": "http://schema.org/SoftwareApplication" },
        { "@id": "http://schema.org/SoftwareSourceCode" },   
        { "@id": "https://bioschemas.org/ComputationalWorkflow" },
        { "@id": "http://schema.org/CreateAction" },
        { "@id": "http://schema.org/name" },
        { "@id": "http://schema.org/description" },
        { "@id": "http://schema.org/endTime" },
        { "@id": "http://schema.org/startTime" },
        { "@id": "http://schema.org/instrument" },
        { "@id": "http://schema.org/agent" },
        { "@id": "http://schema.org/Person" },
        { "@id": "http://schema.org/Organization" },
        { "@id": "http://schema.org/object" },
        { "@id": "http://schema.org/result" },
        { "@id": "http://schema.org/actionStatus" },
        { "@id": "http://schema.org/error" },
        { "@id": "http://schema.org/CompletedActionStatus" },
        { "@id": "http://schema.org/FailedActionStatus" },
        { "@id": "http://schema.org/MediaObject" },
        { "@id": "http://schema.org/Dataset" },
        { "@id": "http://schema.org/Collection" },
        { "@id": "http://schema.org/CreativeWork" },
        { "@id": "http://schema.org/PropertyValue" },
        { "@id": "http://schema.org/alternateName" },
        { "@id": "http://schema.org/mainEntity" }
    ],
    "hasResource": [
        { "@id": "#hasSpecification" },
        { "@id": "#hasConstraints" },
        { "@id": "#hasVocabulary" },
        { "@id": "#hasGuidance" },
        { "@id": "#hasExample" },
        { "@id": "#hasMappingToProv"}
    ],
    "citation": { "@id": "https://doi.org/10.1371/journal.pone.0309210" }    
  },
  {
    "@id": "https://www.researchobject.org/workflow-run-crate/",
    "@type": "Project",
    "name": "Workflow Run Crate task force",
    "member": [

      { "@id": "https://orcid.org/0000-0001-8271-5429"}, 
      { "@id": "https://orcid.org/0000-0003-4929-1219"}, 
      { "@id": "https://orcid.org/0000-0001-9842-9718"}, 
      { "@id": "https://orcid.org/0000-0002-5432-2748"}, 
      { "@id": "https://orcid.org/0000-0002-4806-5140"}, 
      { "@id": "https://orcid.org/0000-0003-3156-2105"}, 
      { "@id": "https://orcid.org/0000-0002-6190-122X"}, 
      { "@id": "https://orcid.org/0000-0003-0454-7145"}, 
      { "@id": "https://orcid.org/0000-0002-8940-4946"}, 
      { "@id": "https://orcid.org/0000-0003-0606-2512"}, 
      { "@id": "https://orcid.org/0000-0002-3468-0652"}, 
      { "@id": "https://orcid.org/0000-0002-2961-9670"}, 
      { "@id": "https://orcid.org/0000-0003-3986-0510"}, 
      { "@id": "https://orcid.org/0000-0002-0003-2024"}, 
      { "@id": "https://orcid.org/0000-0002-9464-6640"}, 
      { "@id": "https://orcid.org/0000-0001-5845-8880"}, 
      { "@id": "https://orcid.org/0000-0003-4894-4660"}, 
      { "@id": "https://orcid.org/0000-0002-4405-6802"}, 
      { "@id": "https://orcid.org/0000-0001-9290-2017"}, 
      { "@id": "https://orcid.org/0000-0003-0617-9219"}, 
      { "@id": "https://orcid.org/0000-0001-9228-2882"}, 
      { "@id": "https://orcid.org/0000-0003-3898-9451"}, 
      { "@id": "https://orcid.org/0000-0003-3777-5945"}, 
      { "@id": "https://orcid.org/0000-0003-2765-0049"}, 
      { "@id": "https://orcid.org/0000-0001-9818-9320"}, 
      { "@id": "https://orcid.org/0000-0002-8122-9522"}, 
      { "@id": "https://orcid.org/0000-0002-8330-4071"}, 
      { "@id": "https://orcid.org/0000-0003-4073-7456"}, 
      { "@id": "https://orcid.org/0000-0003-1361-7301"}, 
      { "@id": "https://orcid.org/0000-0002-5358-616X"}, 
      { "@id": "https://orcid.org/0000-0002-5477-287X"}, 
      { "@id": "https://orcid.org/0000-0001-8250-4074"}, 
      { "@id": "https://orcid.org/0000-0003-0902-0086"}, 
      { "@id": "https://orcid.org/0000-0001-8172-8981"}, 
      { "@id": "https://orcid.org/0000-0001-6740-9212"}, 
      { "@id": "https://orcid.org/0000-0001-5411-356X"}, 
      { "@id": "https://orcid.org/0000-0003-0035-0951"}, 
      { "@id": "https://orcid.org/0000-0003-0711-5196"}
    ],
    "parentOrganization": { "@id": "https://www.researchobject.org/ro-crate/community" }
  },
  { 
    "@id": "https://www.researchobject.org/ro-crate/community",
    "@type": "Project",
    "name": "RO-Crate Community"
  },
  {
    "@id": "index.html",
    "@type": "File",
    "name": "Process Run Crate (HTML)",
    "encodingFormat": [
      "text/html",
      {"@id": "https://www.nationalarchives.gov.uk/PRONOM/fmt/471"}
    ]
  },
  {
    "@id": "index.html#requirements",
    "@type": "WebPageElement",
    "name": "Process Run Crate requirements"
  },
  {
    "@id": "example1/",
    "@type": "Dataset",
    "name": "Example Process Run Crate",
    "conformsTo": [
      { "@id": "https://w3id.org/ro/crate"},
      { "@id": "https://w3id.org/ro/wfrun/process/0.4" }
    ], 
    "subjectOf": [
      { "@id": "example1/ro-crate-metadata.json" },
      { "@id": "example1/ro-crate-preview.html" }
    ]
  },
  {
    "@id": "example1/ro-crate-metadata.json",
    "@type": "CreativeWork",
    "encodingFormat": "application/ld+json"
  },
  {
    "@id": "example1/ro-crate-preview.html",
    "@type": "CreativeWork",
    "encodingFormat": "text/html"
  },  
  {
    "@id": "https://w3id.org/ro/terms/workflow-run",
    "@type": "File",
    "name": "JSON-LD context for workflow-run terms",
    "contentUrl": "https://www.researchobject.org/ro-terms/workflow-run/context.json",
    "conformsTo": {
      "@id": "http://www.w3.org/ns/json-ld#Context"
    },
    "encodingFormat": "application/ld+json",
    "isBasedOn": [
      {
        "@id": "https://w3id.org/ro/crate/1.1/context"
      },
      {
        "@id": "https://w3id.org/ro/terms/workflow-run#"
      }
    ],
    "license": {
      "@id": "https://creativecommons.org/publicdomain/zero/1.0/"
    }
  },    
  {
    "@id": "#hasSpecification",
    "@type": "ResourceDescriptor",
    "hasRole": { "@id": "http://www.w3.org/ns/dx/prof/role/specification" },
    "hasArtifact": {"@id": "index.html"}
  },
  {
    "@id": "#hasConstraints",
    "@type": "ResourceDescriptor",
    "hasRole": { "@id": "http://www.w3.org/ns/dx/prof/role/constraints" },
    "hasArtifact": {"@id": "index.html#requirements"}
  },
  {
    "@id": "#hasVocabulary",
    "@type": "ResourceDescriptor",
    "hasRole": { "@id": "http://www.w3.org/ns/dx/prof/role/vocabulary" },
    "hasArtifact": {"@id": "https://w3id.org/ro/terms/workflow-run#"}
  },
  {
    "@id": "#hasGuidance",
    "@type": "ResourceDescriptor",
    "hasRole": { "@id": "http://www.w3.org/ns/dx/prof/role/guidance" },
    "hasArtifact": {"@id": "https://gxy.io/GTN:T00343"}
  },
  { 
    "@id": "#hasExample",
    "@type": "ResourceDescriptor",
    "hasRole": { "@id": "http://www.w3.org/ns/dx/prof/role/example" },
    "hasArtifact": { "@id": "example1/" }
  },
  {
    "@id": "#hasMappingToProv",
    "@type": "ResourceDescriptor",
    "hasRole": { "@id": "http://www.w3.org/ns/dx/prof/role/mapping" },
    "hasArtifact": { "@id": "https://www.researchobject.org/workflow-run-crate-paper/mapping/" }
  },
  { 
    "@id": "https://www.researchobject.org/workflow-run-crate-paper/mapping/",
    "@type": "Dataset",
    "name": "SSSOM mapping from PROV to Workflow Run Crate",
    "isPartOf": { 
      "@id": "https://w3id.org/ro/doi/10.5281/zenodo.10368989"
    }
  },
  {
    "@id": "https://w3id.org/ro/doi/10.5281/zenodo.10368989",
    "@type": "Dataset",
    "name": "Recording provenance of workflow runs with RO-Crate (RO-Crate and mapping)",
    "conformsTo": { "@id": "https://w3id.org/ro/crate" },
    "subjectOf": [
      { "@id": "https://www.researchobject.org/workflow-run-crate-paper/ro-crate-metadata.jsonld" },
      { "@id": "https://www.researchobject.org/workflow-run-crate-paper/ro-crate-preview.html" }
    ]
  },
  {
    "@id": "https://www.researchobject.org/workflow-run-crate-paper/ro-crate-metadata.jsonld",
    "@type": "CreativeWork",
    "encodingFormat": "application/ld+json"
  },
  {
    "@id": "https://www.researchobject.org/workflow-run-crate-paper/ro-crate-preview.html",
    "@type": "CreativeWork",
    "encodingFormat": "text/html"
  },
  { 
    "@id": "https://gxy.io/GTN:T00343",
    "@type": "LearningResource",
    "name": "Workflow Run RO-Crate Introduction",
    "author": {
      "@id": "https://orcid.org/0000-0001-8271-5429"
    }
  },
  { "@id": "https://doi.org/10.1371/journal.pone.0309210",
    "@type": "ScholarlyArticle",
    "name": "Recording provenance of workflow runs with RO-Crate",
    "author": [
      {
        "@id": "https://orcid.org/0000-0001-8271-5429"
      },
      {
        "@id": "https://orcid.org/0000-0002-2961-9670"
      },
      {
        "@id": "https://orcid.org/0000-0003-4929-1219"
      },
      {
        "@id": "https://orcid.org/0000-0003-0606-2512"
      },
      {
        "@id": "https://orcid.org/0000-0002-3468-0652"
      },
      {
        "@id": "https://orcid.org/0000-0002-8940-4946"
      },
      {
        "@id": "https://orcid.org/0000-0002-0003-2024"
      },
      {
        "@id": "https://orcid.org/0000-0002-4663-5613"
      },
      {
        "@id": "https://orcid.org/0000-0003-0454-7145"
      },
      {
        "@id": "https://orcid.org/0000-0002-4806-5140"
      },
      {
        "@id": "https://orcid.org/0000-0001-9290-2017"
      },
      {
        "@id": "https://orcid.org/0000-0002-1119-1792"
      },
      {
        "@id": "https://orcid.org/0000-0003-3777-5945"
      },
      {
        "@id": "https://orcid.org/0000-0003-2765-0049"
      },
      {
        "@id": "https://orcid.org/0000-0002-0309-604X"
      },
      {
        "@id": "https://orcid.org/0000-0003-0902-0086"
      },
      {
        "@id": "https://orcid.org/0000-0001-8250-4074"
      },
      {
        "@id": "https://orcid.org/0000-0001-9842-9718"
      }
    ],

    "creditText": "Simone Leo, et al. (2024) Recording provenance of workflow runs with RO-Crate. PLoS ONE 19(9): e0309210."
  },
  {
    "@id": "https://w3id.org/ro/terms/workflow-run#",
    "@type": "DefinedTermSet",
    "name": "Namespace for Workflow Run RO-Crate model",
    "hasDefinedTerm": [
      { "@id": "https://w3id.org/ro/terms/workflow-run#ParameterConnection" },
      { "@id": "https://w3id.org/ro/terms/workflow-run#ContainerImage" },
      { "@id": "https://w3id.org/ro/terms/workflow-run#DockerImage" },
      { "@id": "https://w3id.org/ro/terms/workflow-run#SIFImage" },
      { "@id": "https://w3id.org/ro/terms/workflow-run#connection" },
      { "@id": "https://w3id.org/ro/terms/workflow-run#sourceParameter" },
      { "@id": "https://w3id.org/ro/terms/workflow-run#targetParameter" },
      { "@id": "https://w3id.org/ro/terms/workflow-run#environment" },
      { "@id": "https://w3id.org/ro/terms/workflow-run#registry" },
      { "@id": "https://w3id.org/ro/terms/workflow-run#tag" },
      { "@id": "https://w3id.org/ro/terms/workflow-run#containerImage" },
      { "@id": "https://w3id.org/ro/terms/workflow-run#resourceUsage" },
      { "@id": "https://w3id.org/ro/terms/workflow-run#md5" },
      { "@id": "https://w3id.org/ro/terms/workflow-run#sha1" },
      { "@id": "https://w3id.org/ro/terms/workflow-run#sha256" },
      { "@id": "https://w3id.org/ro/terms/workflow-run#sha512" }
    ]
  },

  { 
    "@id": "https://w3id.org/ro/terms/workflow-run#ParameterConnection",
    "@type": ["DefinedTerm", "rdfs:Class"],
    "termCode": "ParameterConnection",
    "name": "Parameter Connection",
    "description": "A connection between parameters of different applications"
  },
  { 
    "@id": "https://w3id.org/ro/terms/workflow-run#ContainerImage",
    "@type": ["DefinedTerm", "rdfs:Class"],
    "termCode": "ContainerImage",
    "name": "Container Image",
    "description": "A containerization software container image"
  },
  { 
    "@id": "https://w3id.org/ro/terms/workflow-run#DockerImage",
    "@type": ["DefinedTerm", "rdfs:Class"],
    "termCode": "DockerImage",
    "name": "Docker Image",
    "description": "A docker container image"
  },
  { 
    "@id": "https://w3id.org/ro/terms/workflow-run#SIFImage",
    "@type": ["DefinedTerm", "rdfs:Class"],
    "termCode": "SIFImage",
    "name": "SIF Image",
    "description": "A Singularity Image Format container image"
  },
  { 
    "@id": "https://w3id.org/ro/terms/workflow-run#connection",
    "@type": ["DefinedTerm", "rdf:Property"],
    "termCode": "connection",
    "name": "connection",
    "description": "A parameter connection created by this workflow",
    "domainIncludes": [
	    {"@id": "https://bioschemas.org/ComputationalWorkflow"},
	    {"@id": "http://schema.org/HowToStep"}
    ],
    "rangeIncludes": [
      {"@id": "https://w3id.org/ro/terms/workflow-run#ParameterConnection"}
    ]
  },
  { 
    "@id": "https://w3id.org/ro/terms/workflow-run#sourceParameter",
    "@type": ["DefinedTerm", "rdf:Property"],
    "termCode": "sourceParameter",
    "name": "source parameter",
    "description": "The source (upstream) parameter",
    "domainIncludes": [
      {"@id": "https://w3id.org/ro/terms/workflow-run#ParameterConnection"}
    ],
    "rangeIncludes": [
      {"@id": "https://bioschemas.org/FormalParameter"}
    ]
  },
  { 
    "@id": "https://w3id.org/ro/terms/workflow-run#targetParameter",
    "@type": ["DefinedTerm", "rdf:Property"],
    "termCode": "targetParameter",
    "name": "target parameter",
    "description": "The target (upstream) parameter",
    "domainIncludes": [
      {"@id": "https://w3id.org/ro/terms/workflow-run#ParameterConnection"}
    ],
    "rangeIncludes": [
      {"@id": "https://bioschemas.org/FormalParameter"}
    ]
  },
  { 
    "@id": "https://w3id.org/ro/terms/workflow-run#environment",
    "@type": ["DefinedTerm", "rdf:Property"],
    "termCode": "environment",
    "name": "environment",
    "description": "environment variables used by the application",
    "domainIncludes": [
      {"@id": "http://schema.org/SoftwareApplication"},
      {"@id": "http://schema.org/SoftwareSourceCode"},
      {"@id": "http://schema.org/CreateAction"},
      {"@id": "https://bioschema.org/ComputationalWorkflow"}
    ],
    "rangeIncludes": [
      {"@id": "https://bioschemas.org/FormalParameter"},
      {"@id": "http://schema.org/PropertyValue"}
    ]
  },
  { 
    "@id": "https://w3id.org/ro/terms/workflow-run#registry",
    "@type": ["DefinedTerm", "rdf:Property"],
    "termCode": "registry",
    "name": "registry",
    "description": "A service to register software products, such as container images",
    "domainIncludes": [
      { "@id": "https://w3id.org/ro/terms/workflow-run#ContainerImage" }
    ],
    "rangeIncludes": [
      {"@id": "http://schema.org/Text"}
    ]
  },
  { 
    "@id": "https://w3id.org/ro/terms/workflow-run#tag",
    "@type": ["DefinedTerm", "rdf:Property"],
    "termCode": "tag",
    "name": "tag",
    "description": "A tag assigned to a software product, such as a container image",
    "domainIncludes": [
      { "@id": "https://w3id.org/ro/terms/workflow-run#ContainerImage" }
    ],
    "rangeIncludes": [
      {"@id": "http://schema.org/Text"}
    ]
  },
  { 
    "@id": "https://w3id.org/ro/terms/workflow-run#containerImage",
    "@type": ["DefinedTerm", "rdf:Property"],
    "termCode": "containerImage",
    "name": "container image",
    "description": "A container image associated with this entity",
    "domainIncludes": [
      {"@id": "http://schema.org/CreateAction"}
    ],
    "rangeIncludes": [
      { "@id": "https://w3id.org/ro/terms/workflow-run#ContainerImage" },
      { "@id": "http://schema.org/URL" }
    ]
  },
  { 
    "@id": "https://w3id.org/ro/terms/workflow-run#resourceUsage",
    "@type": ["DefinedTerm", "rdf:Property"],
    "termCode": "resourceUsage",
    "name": "resource usage",
    "description": "A resource usage item, such as peak memory",
    "domainIncludes": [
      {"@id": "http://schema.org/CreateAction"}
    ],
    "rangeIncludes": [
      { "@id": "http://schema.org/PropertyValue" }
    ]
  },
  {
    "@id": "https://w3id.org/ro/terms/workflow-run#md5",
    "@type": ["DefinedTerm", "rdf:Property"],
    "termCode": "md5",
    "name": "md5 checksum",
    "description": "md5 checksum as a hexadecimal string",
    "domainIncludes": [
      {"@id": "http://schema.org/MediaObject"},
      { "@id": "https://w3id.org/ro/terms/workflow-run#ContainerImage" }
    ],
    "rangeIncludes": [
      {"@id": "http://schema.org/Text"}
    ]
  },
  { 
    "@id": "https://w3id.org/ro/terms/workflow-run#sha1",
    "@type": ["DefinedTerm", "rdf:Property"],
    "termCode": "sha1",
    "name": "sha1 checksum",
    "description": "sha1 checksum as a hexadecimal string",
    "domainIncludes": [
      {"@id": "http://schema.org/MediaObject"},
      { "@id": "https://w3id.org/ro/terms/workflow-run#ContainerImage" }
    ],
    "rangeIncludes": [
      {"@id": "http://schema.org/Text"}
    ]
  },
  { 
    "@id": "https://w3id.org/ro/terms/workflow-run#sha256",
    "@type": ["DefinedTerm", "rdf:Property"],
    "termCode": "sha256",
    "name": "sha256 checksum",
    "description": "sha256 checksum as a hexadecimal string",
    "domainIncludes": [
      {"@id": "http://schema.org/MediaObject"},
      { "@id": "https://w3id.org/ro/terms/workflow-run#ContainerImage" }
    ],
    "rangeIncludes": [
      {"@id": "http://schema.org/Text"}
    ],
    "sameAs": { 
      "@id": "http://schema.org/sha256"
    }
  },
  { 
    "@id": "https://w3id.org/ro/terms/workflow-run#sha512",
    "@type": ["DefinedTerm", "rdf:Property"],
    "termCode": "sha512",
    "name": "sha512 checksum",
    "description": "sha512 checksum as a hexadecimal string",
    "domainIncludes": [
      {"@id": "http://schema.org/MediaObject"},
      { "@id": "https://w3id.org/ro/terms/workflow-run#ContainerImage" }
    ],
    "rangeIncludes": [
      {"@id": "http://schema.org/Text"}
    ]
  },
  {
    "@id": "https://pypi.org/project/runcrate/",
    "@type": "SoftwareApplication",
    "name": "runcrate",
    "version": "0.5.0",
    "url": "https://pypi.org/project/runcrate/"
  },
  { 
    "@id": "http://schema.org/MediaObject",
    "@type": "DefinedTerm",
    "name": "MediaObject",
    "termCode": "File"
  },
  { 
    "@id": "http://schema.org/Text",
    "@type": "DefinedTerm",
    "name": "Text"
  },
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