From abf0bd7ff4cbac734bde0e77582b9ad58b6c630b Mon Sep 17 00:00:00 2001 From: Simon Rit Date: Wed, 19 Feb 2025 10:54:19 +0100 Subject: [PATCH] STYLE: Use CMAKE_PROJECT_NAME for setting command line package name --- applications/rtkadmmtotalvariation/rtkadmmtotalvariation.ggo | 1 - applications/rtkadmmwavelets/rtkadmmwavelets.ggo | 1 - applications/rtkamsterdamshroud/rtkamsterdamshroud.ggo | 1 - applications/rtkbackprojections/rtkbackprojections.ggo | 1 - applications/rtkbioscangeometry/rtkbioscangeometry.ggo | 1 - applications/rtkcheckimagequality/rtkcheckimagequality.ggo | 1 - applications/rtkconjugategradient/rtkconjugategradient.ggo | 1 - applications/rtkdigisensgeometry/rtkdigisensgeometry.ggo | 1 - applications/rtkdrawgeometricphantom/rtkdrawgeometricphantom.ggo | 1 - .../rtkdrawshepploganphantom/rtkdrawshepploganphantom.ggo | 1 - .../rtkdualenergyforwardmodel/rtkdualenergyforwardmodel.ggo | 1 - .../rtkdualenergysimplexdecomposition.ggo | 1 - .../rtkelektasynergygeometry/rtkelektasynergygeometry.ggo | 1 - applications/rtkextractphasesignal/rtkextractphasesignal.ggo | 1 - applications/rtkextractshroudsignal/rtkextractshroudsignal.ggo | 1 - applications/rtkfdk/rtkfdk.ggo | 1 - applications/rtkfdktwodweights/rtkfdktwodweights.ggo | 1 - applications/rtkfieldofview/rtkfieldofview.ggo | 1 - applications/rtkforwardprojections/rtkforwardprojections.ggo | 1 - .../rtkfourdconjugategradient/rtkfourdconjugategradient.ggo | 1 - applications/rtkfourdfdk/rtkfourdfdk.ggo | 1 - applications/rtkfourdrooster/rtkfourdrooster.ggo | 1 - applications/rtkfourdsart/rtkfourdsart.ggo | 1 - applications/rtkgaincorrection/rtkgaincorrection.ggo | 1 - applications/rtki0estimation/rtki0estimation.ggo | 1 - applications/rtkimagxgeometry/rtkimagxgeometry.ggo | 1 - applications/rtkiterativefdk/rtkiterativefdk.ggo | 1 - applications/rtklagcorrection/rtklagcorrection.ggo | 1 - .../rtklastdimensionl0gradientdenoising.ggo | 1 - applications/rtklut/rtklut.ggo | 1 - applications/rtkmaskcollimation/rtkmaskcollimation.ggo | 1 - applications/rtkmcrooster/rtkmcrooster.ggo | 1 - .../rtkmotioncompensatedfourdconjugategradient.ggo | 1 - applications/rtkorageometry/rtkorageometry.ggo | 1 - applications/rtkosem/rtkosem.ggo | 1 - .../rtkoverlayphaseandshroud/rtkoverlayphaseandshroud.ggo | 1 - .../rtkparkershortscanweighting/rtkparkershortscanweighting.ggo | 1 - .../rtkprojectgeometricphantom/rtkprojectgeometricphantom.ggo | 1 - applications/rtkprojectionmatrix/rtkprojectionmatrix.ggo | 1 - applications/rtkprojections/rtkprojections.ggo | 1 - .../rtkprojectshepploganphantom/rtkprojectshepploganphantom.ggo | 1 - applications/rtkramp/rtkramp.ggo | 1 - applications/rtkrayboxintersection/rtkrayboxintersection.ggo | 1 - .../rtkrayellipsoidintersection/rtkrayellipsoidintersection.ggo | 1 - .../rtkrayquadricintersection/rtkrayquadricintersection.ggo | 1 - .../rtkregularizedconjugategradient.ggo | 1 - applications/rtksart/rtksart.ggo | 1 - .../rtkscatterglarecorrection/rtkscatterglarecorrection.ggo | 1 - applications/rtksimulatedgeometry/rtksimulatedgeometry.ggo | 1 - .../rtkspectraldenoiseprojections.ggo | 1 - applications/rtkspectralforwardmodel/rtkspectralforwardmodel.ggo | 1 - applications/rtkspectralonestep/rtkspectralonestep.ggo | 1 - applications/rtkspectralrooster/rtkspectralrooster.ggo | 1 - .../rtkspectralsimplexdecomposition.ggo | 1 - applications/rtksubselect/rtksubselect.ggo | 1 - .../rtktotalnuclearvariationdenoising.ggo | 1 - .../rtktotalvariationdenoising/rtktotalvariationdenoising.ggo | 1 - applications/rtktutorialapplication/rtktutorialapplication.ggo | 1 - applications/rtkvarianobigeometry/rtkvarianobigeometry.ggo | 1 - .../rtkvarianprobeamgeometry/rtkvarianprobeamgeometry.ggo | 1 - .../rtkvectorconjugategradient/rtkvectorconjugategradient.ggo | 1 - .../rtkwangdisplaceddetectorweighting.ggo | 1 - .../rtkwarpedbackprojectsequence.ggo | 1 - .../rtkwarpedforwardprojectsequence.ggo | 1 - applications/rtkwaveletsdenoising/rtkwaveletsdenoising.ggo | 1 - applications/rtkxradgeometry/rtkxradgeometry.ggo | 1 - cmake/FindGengetopt.cmake | 1 + 67 files changed, 1 insertion(+), 66 deletions(-) diff --git a/applications/rtkadmmtotalvariation/rtkadmmtotalvariation.ggo b/applications/rtkadmmtotalvariation/rtkadmmtotalvariation.ggo index 0a3c0b6fa..b0ccc34e7 100644 --- a/applications/rtkadmmtotalvariation/rtkadmmtotalvariation.ggo +++ b/applications/rtkadmmtotalvariation/rtkadmmtotalvariation.ggo @@ -1,4 +1,3 @@ -package "rtkadmmtotalvariation" purpose "Performs an iterative 3D reconstruction with 3D TV regularization" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkadmmwavelets/rtkadmmwavelets.ggo b/applications/rtkadmmwavelets/rtkadmmwavelets.ggo index 775297148..c9e3b6774 100644 --- a/applications/rtkadmmwavelets/rtkadmmwavelets.ggo +++ b/applications/rtkadmmwavelets/rtkadmmwavelets.ggo @@ -1,4 +1,3 @@ -package "rtkadmmwavelets" purpose "Performs an iterative 3D reconstruction with Daubechies wavelets regularization" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkamsterdamshroud/rtkamsterdamshroud.ggo b/applications/rtkamsterdamshroud/rtkamsterdamshroud.ggo index 5f899bad7..292bacaf8 100644 --- a/applications/rtkamsterdamshroud/rtkamsterdamshroud.ggo +++ b/applications/rtkamsterdamshroud/rtkamsterdamshroud.ggo @@ -1,4 +1,3 @@ -package "rtkamsterdamshroud" purpose "Creates an Amsterdam Shroud image from a sequence of projections [Zijp et al, ICCR, 2004]." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkbackprojections/rtkbackprojections.ggo b/applications/rtkbackprojections/rtkbackprojections.ggo index 951f3536b..984d7d657 100644 --- a/applications/rtkbackprojections/rtkbackprojections.ggo +++ b/applications/rtkbackprojections/rtkbackprojections.ggo @@ -1,4 +1,3 @@ -package "rtkbackprojections" purpose "Backprojects a volume according to a geometry file." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkbioscangeometry/rtkbioscangeometry.ggo b/applications/rtkbioscangeometry/rtkbioscangeometry.ggo index 22a1983c9..aeb8d842c 100644 --- a/applications/rtkbioscangeometry/rtkbioscangeometry.ggo +++ b/applications/rtkbioscangeometry/rtkbioscangeometry.ggo @@ -1,4 +1,3 @@ -package "rtkbioscangeometry" purpose "Creates an RTK geometry file from a sequence of x-ray projections of a Bioscan NanoSPECT/CT scanner." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkcheckimagequality/rtkcheckimagequality.ggo b/applications/rtkcheckimagequality/rtkcheckimagequality.ggo index 6d2240e71..a5219d402 100644 --- a/applications/rtkcheckimagequality/rtkcheckimagequality.ggo +++ b/applications/rtkcheckimagequality/rtkcheckimagequality.ggo @@ -1,4 +1,3 @@ -package "rtkcheckimagequality" purpose "Checks the MSE of a reconstructed image against a reference." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkconjugategradient/rtkconjugategradient.ggo b/applications/rtkconjugategradient/rtkconjugategradient.ggo index 0c5c919eb..613de738b 100644 --- a/applications/rtkconjugategradient/rtkconjugategradient.ggo +++ b/applications/rtkconjugategradient/rtkconjugategradient.ggo @@ -1,4 +1,3 @@ -package "rtkconjugategradient" purpose "Reconstructs a 3D volume from a sequence of projections with a conjugate gradient technique" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkdigisensgeometry/rtkdigisensgeometry.ggo b/applications/rtkdigisensgeometry/rtkdigisensgeometry.ggo index 0d52920d4..50cf53288 100644 --- a/applications/rtkdigisensgeometry/rtkdigisensgeometry.ggo +++ b/applications/rtkdigisensgeometry/rtkdigisensgeometry.ggo @@ -1,4 +1,3 @@ -package "rtkdigisensgeometry" purpose "Creates an RTK geometry file from a Digisens geometry calibration." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkdrawgeometricphantom/rtkdrawgeometricphantom.ggo b/applications/rtkdrawgeometricphantom/rtkdrawgeometricphantom.ggo index f9ff86eca..7463caf63 100644 --- a/applications/rtkdrawgeometricphantom/rtkdrawgeometricphantom.ggo +++ b/applications/rtkdrawgeometricphantom/rtkdrawgeometricphantom.ggo @@ -1,4 +1,3 @@ -package "rtkdrawgeometricphantom" purpose "Computes a 3D voxelized phantom from a phantom description file" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkdrawshepploganphantom/rtkdrawshepploganphantom.ggo b/applications/rtkdrawshepploganphantom/rtkdrawshepploganphantom.ggo index 88d7cbf63..12407c12d 100644 --- a/applications/rtkdrawshepploganphantom/rtkdrawshepploganphantom.ggo +++ b/applications/rtkdrawshepploganphantom/rtkdrawshepploganphantom.ggo @@ -1,4 +1,3 @@ -package "rtkdrawshepploganphantom" purpose "Computes a 3D voxelized Shepp & Logan phantom with noise [https://www.slaney.org/pct/pct-errata.html]" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkdualenergyforwardmodel/rtkdualenergyforwardmodel.ggo b/applications/rtkdualenergyforwardmodel/rtkdualenergyforwardmodel.ggo index c83cd39fa..4cad9604c 100644 --- a/applications/rtkdualenergyforwardmodel/rtkdualenergyforwardmodel.ggo +++ b/applications/rtkdualenergyforwardmodel/rtkdualenergyforwardmodel.ggo @@ -1,4 +1,3 @@ -package "rtkspectralforwardmodel" purpose "Computes expected photon counts from incident spectrum, material attenuations, detector response and material-decomposed projections" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkdualenergysimplexdecomposition/rtkdualenergysimplexdecomposition.ggo b/applications/rtkdualenergysimplexdecomposition/rtkdualenergysimplexdecomposition.ggo index 63209d286..d928590d1 100644 --- a/applications/rtkdualenergysimplexdecomposition/rtkdualenergysimplexdecomposition.ggo +++ b/applications/rtkdualenergysimplexdecomposition/rtkdualenergysimplexdecomposition.ggo @@ -1,4 +1,3 @@ -package "rtkdualenergysimplexdecomposition" purpose "Decomposes dual energy projections into materials" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkelektasynergygeometry/rtkelektasynergygeometry.ggo b/applications/rtkelektasynergygeometry/rtkelektasynergygeometry.ggo index 76aaf1387..4d628b4b0 100644 --- a/applications/rtkelektasynergygeometry/rtkelektasynergygeometry.ggo +++ b/applications/rtkelektasynergygeometry/rtkelektasynergygeometry.ggo @@ -1,4 +1,3 @@ -package "rtkelektasynergygeometry" purpose "Creates an RTK geometry file from an Elekta Synergy acquisition." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkextractphasesignal/rtkextractphasesignal.ggo b/applications/rtkextractphasesignal/rtkextractphasesignal.ggo index 682b6c07e..ea8b95a01 100644 --- a/applications/rtkextractphasesignal/rtkextractphasesignal.ggo +++ b/applications/rtkextractphasesignal/rtkextractphasesignal.ggo @@ -1,4 +1,3 @@ -package "rtkextractshroudsignal" purpose "Extracts the phase from a signal." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkextractshroudsignal/rtkextractshroudsignal.ggo b/applications/rtkextractshroudsignal/rtkextractshroudsignal.ggo index 6c78ed6be..178d419e0 100644 --- a/applications/rtkextractshroudsignal/rtkextractshroudsignal.ggo +++ b/applications/rtkextractshroudsignal/rtkextractshroudsignal.ggo @@ -1,4 +1,3 @@ -package "rtkextractshroudsignal" purpose "Extracts the breathing signal from a shroud image." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkfdk/rtkfdk.ggo b/applications/rtkfdk/rtkfdk.ggo index 86392b598..6c2c98d5d 100644 --- a/applications/rtkfdk/rtkfdk.ggo +++ b/applications/rtkfdk/rtkfdk.ggo @@ -1,4 +1,3 @@ -package "rtkfdk" purpose "Reconstructs a 3D volume from a sequence of projections [Feldkamp, David, Kress, 1984]." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkfdktwodweights/rtkfdktwodweights.ggo b/applications/rtkfdktwodweights/rtkfdktwodweights.ggo index 1195b4ed9..02c62b2db 100644 --- a/applications/rtkfdktwodweights/rtkfdktwodweights.ggo +++ b/applications/rtkfdktwodweights/rtkfdktwodweights.ggo @@ -1,4 +1,3 @@ -package "rtkfdktwodweights" purpose "Weights projection stack with 2D weights of Feldkamp cone-beam reconstruction algorithm." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkfieldofview/rtkfieldofview.ggo b/applications/rtkfieldofview/rtkfieldofview.ggo index 97b561111..0fc937ff4 100644 --- a/applications/rtkfieldofview/rtkfieldofview.ggo +++ b/applications/rtkfieldofview/rtkfieldofview.ggo @@ -1,4 +1,3 @@ -package "rtkfieldofview" purpose "Computes the field of view of a reconstruction." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkforwardprojections/rtkforwardprojections.ggo b/applications/rtkforwardprojections/rtkforwardprojections.ggo index d867b7690..3af875f7f 100644 --- a/applications/rtkforwardprojections/rtkforwardprojections.ggo +++ b/applications/rtkforwardprojections/rtkforwardprojections.ggo @@ -1,4 +1,3 @@ -package "rtkforwardprojections" purpose "Projects a volume according to a geometry file." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkfourdconjugategradient/rtkfourdconjugategradient.ggo b/applications/rtkfourdconjugategradient/rtkfourdconjugategradient.ggo index 86eb5c946..8f1d1327e 100644 --- a/applications/rtkfourdconjugategradient/rtkfourdconjugategradient.ggo +++ b/applications/rtkfourdconjugategradient/rtkfourdconjugategradient.ggo @@ -1,4 +1,3 @@ -package "rtkfourdconjugategradient" purpose "Reconstructs a 3D + time sequence of volumes from a projection stack and a respiratory/cardiac signal, with a conjugate gradient technique" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkfourdfdk/rtkfourdfdk.ggo b/applications/rtkfourdfdk/rtkfourdfdk.ggo index 7fd0e1bb5..dc20edceb 100644 --- a/applications/rtkfourdfdk/rtkfourdfdk.ggo +++ b/applications/rtkfourdfdk/rtkfourdfdk.ggo @@ -1,4 +1,3 @@ -package "rtkfourdfdk" purpose "Reconstructs a 4D volume from a sequence of projections using FDK with one projection per respiratory cycle in each frame." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkfourdrooster/rtkfourdrooster.ggo b/applications/rtkfourdrooster/rtkfourdrooster.ggo index eca4da08e..58ef693c6 100644 --- a/applications/rtkfourdrooster/rtkfourdrooster.ggo +++ b/applications/rtkfourdrooster/rtkfourdrooster.ggo @@ -1,4 +1,3 @@ -package "rtkfourdrooster" purpose "Reconstructs a 3D + time sequence of volumes from a projection stack and a respiratory/cardiac signal, applying TV regularization in space and time, and restricting motion to a region of interest" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkfourdsart/rtkfourdsart.ggo b/applications/rtkfourdsart/rtkfourdsart.ggo index 8cf2e9cf0..7d17a1dc9 100644 --- a/applications/rtkfourdsart/rtkfourdsart.ggo +++ b/applications/rtkfourdsart/rtkfourdsart.ggo @@ -1,4 +1,3 @@ -package "rtkfourdsart" purpose "Reconstructs a 4D sequence of volumes from a sequence of projections with a 4D version of the Simulatenous Algebraic Reconstruction Technique [Andersen, 1984]." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkgaincorrection/rtkgaincorrection.ggo b/applications/rtkgaincorrection/rtkgaincorrection.ggo index f6aba0322..8b0806a6d 100644 --- a/applications/rtkgaincorrection/rtkgaincorrection.ggo +++ b/applications/rtkgaincorrection/rtkgaincorrection.ggo @@ -1,4 +1,3 @@ -package "rtk" purpose "Polynomial gain correction projections" option "config" - "Config file" string no diff --git a/applications/rtki0estimation/rtki0estimation.ggo b/applications/rtki0estimation/rtki0estimation.ggo index 04024a857..d8bf66305 100644 --- a/applications/rtki0estimation/rtki0estimation.ggo +++ b/applications/rtki0estimation/rtki0estimation.ggo @@ -1,4 +1,3 @@ -package "rtki0estimation" purpose "Reads projection images and estimates the I0 value for each of them" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkimagxgeometry/rtkimagxgeometry.ggo b/applications/rtkimagxgeometry/rtkimagxgeometry.ggo index 145e03119..612b33b3c 100644 --- a/applications/rtkimagxgeometry/rtkimagxgeometry.ggo +++ b/applications/rtkimagxgeometry/rtkimagxgeometry.ggo @@ -1,4 +1,3 @@ -package "rtkimagxgeometry" purpose "Creates an RTK geometry file from an iMagX acquisition." option "config" - "Config file" string no diff --git a/applications/rtkiterativefdk/rtkiterativefdk.ggo b/applications/rtkiterativefdk/rtkiterativefdk.ggo index 08ebd7c99..218931a10 100644 --- a/applications/rtkiterativefdk/rtkiterativefdk.ggo +++ b/applications/rtkiterativefdk/rtkiterativefdk.ggo @@ -1,4 +1,3 @@ -package "rtkiterativefdk" purpose "Reconstructs a 3D volume from a sequence of projections [Feldkamp, David, Kress, 1984]." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtklagcorrection/rtklagcorrection.ggo b/applications/rtklagcorrection/rtklagcorrection.ggo index 872dffd3a..dbcc619a7 100644 --- a/applications/rtklagcorrection/rtklagcorrection.ggo +++ b/applications/rtklagcorrection/rtklagcorrection.ggo @@ -1,4 +1,3 @@ -package "rtklagcorrection" purpose "4th order LTI Lag correction" option "config" - "Config file" string no diff --git a/applications/rtklastdimensionl0gradientdenoising/rtklastdimensionl0gradientdenoising.ggo b/applications/rtklastdimensionl0gradientdenoising/rtklastdimensionl0gradientdenoising.ggo index 7882eb2dc..75dc6ffd7 100644 --- a/applications/rtklastdimensionl0gradientdenoising/rtklastdimensionl0gradientdenoising.ggo +++ b/applications/rtklastdimensionl0gradientdenoising/rtklastdimensionl0gradientdenoising.ggo @@ -1,4 +1,3 @@ -package "rtklastdimensionl0gradientdenoising" purpose "Performs denoising by minimizing the l0 norm of the gradient" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtklut/rtklut.ggo b/applications/rtklut/rtklut.ggo index 9a135d3f6..14f4d1783 100644 --- a/applications/rtklut/rtklut.ggo +++ b/applications/rtklut/rtklut.ggo @@ -1,4 +1,3 @@ -package "rtklut" purpose "Converts pixel intensities of projection images according to lookup table" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkmaskcollimation/rtkmaskcollimation.ggo b/applications/rtkmaskcollimation/rtkmaskcollimation.ggo index 33e01f783..0335383f5 100644 --- a/applications/rtkmaskcollimation/rtkmaskcollimation.ggo +++ b/applications/rtkmaskcollimation/rtkmaskcollimation.ggo @@ -1,4 +1,3 @@ -package "rtkmaskcollimation" purpose "Masks out the collimator from the projections" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkmcrooster/rtkmcrooster.ggo b/applications/rtkmcrooster/rtkmcrooster.ggo index 19a2f8fd5..792650f9e 100644 --- a/applications/rtkmcrooster/rtkmcrooster.ggo +++ b/applications/rtkmcrooster/rtkmcrooster.ggo @@ -1,4 +1,3 @@ -package "rtkmcrooster" purpose "Reconstructs a 3D + time sequence of volumes from a projection stack and a respiratory/cardiac signal, applying TV regularization in space and time, and restricting motion to a region of interest" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkmotioncompensatedfourdconjugategradient/rtkmotioncompensatedfourdconjugategradient.ggo b/applications/rtkmotioncompensatedfourdconjugategradient/rtkmotioncompensatedfourdconjugategradient.ggo index 3888adcaf..1136923f1 100644 --- a/applications/rtkmotioncompensatedfourdconjugategradient/rtkmotioncompensatedfourdconjugategradient.ggo +++ b/applications/rtkmotioncompensatedfourdconjugategradient/rtkmotioncompensatedfourdconjugategradient.ggo @@ -1,4 +1,3 @@ -package "rtkmotioncompensatedfourdconjugategradient" purpose "Performs a motion-compensated 4D reconstruction by the conjugate gradient method" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkorageometry/rtkorageometry.ggo b/applications/rtkorageometry/rtkorageometry.ggo index b2ad9cfa6..3efce1597 100644 --- a/applications/rtkorageometry/rtkorageometry.ggo +++ b/applications/rtkorageometry/rtkorageometry.ggo @@ -1,4 +1,3 @@ -package "rtkorageometry" purpose "Creates an RTK geometry file from a sequence of ora.xml files (radART / medPhoton file format)." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkosem/rtkosem.ggo b/applications/rtkosem/rtkosem.ggo index 90f3c7df3..480a9c626 100644 --- a/applications/rtkosem/rtkosem.ggo +++ b/applications/rtkosem/rtkosem.ggo @@ -1,4 +1,3 @@ -package "rtkosem" purpose "Reconstructs a 3D volume from a sequence of projections with Ordered subset expectation maximization." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkoverlayphaseandshroud/rtkoverlayphaseandshroud.ggo b/applications/rtkoverlayphaseandshroud/rtkoverlayphaseandshroud.ggo index 6f0186308..d2ecbef53 100644 --- a/applications/rtkoverlayphaseandshroud/rtkoverlayphaseandshroud.ggo +++ b/applications/rtkoverlayphaseandshroud/rtkoverlayphaseandshroud.ggo @@ -1,4 +1,3 @@ -package "rtkoverlayphaseandshroud" purpose "Generates an RGB image showing the phase peaks on top of the shroud" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkparkershortscanweighting/rtkparkershortscanweighting.ggo b/applications/rtkparkershortscanweighting/rtkparkershortscanweighting.ggo index 455441f46..ea1df8613 100644 --- a/applications/rtkparkershortscanweighting/rtkparkershortscanweighting.ggo +++ b/applications/rtkparkershortscanweighting/rtkparkershortscanweighting.ggo @@ -1,4 +1,3 @@ -package "rtkparkershortscanweighting" purpose "Weights projection stack with parker weights for short scan with a divergent geometry." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkprojectgeometricphantom/rtkprojectgeometricphantom.ggo b/applications/rtkprojectgeometricphantom/rtkprojectgeometricphantom.ggo index 339707bad..d5a13630c 100644 --- a/applications/rtkprojectgeometricphantom/rtkprojectgeometricphantom.ggo +++ b/applications/rtkprojectgeometricphantom/rtkprojectgeometricphantom.ggo @@ -1,4 +1,3 @@ -package "rtkprojectgeometricphantom" purpose "Computes projections through a 3D phantom described by a file, according to a geometry" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkprojectionmatrix/rtkprojectionmatrix.ggo b/applications/rtkprojectionmatrix/rtkprojectionmatrix.ggo index 46320c82d..732765049 100644 --- a/applications/rtkprojectionmatrix/rtkprojectionmatrix.ggo +++ b/applications/rtkprojectionmatrix/rtkprojectionmatrix.ggo @@ -1,4 +1,3 @@ -package "rtkprojectionmatrix" purpose "Saves the sparse system matrix of rtk::JosephForwardProjectionImageFilter in a file. Only works in 2D." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkprojections/rtkprojections.ggo b/applications/rtkprojections/rtkprojections.ggo index eafd242bf..b664ccbc3 100644 --- a/applications/rtkprojections/rtkprojections.ggo +++ b/applications/rtkprojections/rtkprojections.ggo @@ -1,4 +1,3 @@ -package "rtkprojections" purpose "Reads raw projection images, converts them to attenuation and stacks them into a single output image file" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkprojectshepploganphantom/rtkprojectshepploganphantom.ggo b/applications/rtkprojectshepploganphantom/rtkprojectshepploganphantom.ggo index a97f4e527..bdfe1c9eb 100644 --- a/applications/rtkprojectshepploganphantom/rtkprojectshepploganphantom.ggo +++ b/applications/rtkprojectshepploganphantom/rtkprojectshepploganphantom.ggo @@ -1,4 +1,3 @@ -package "rtkprojectshepploganphantom" purpose "Computes projections through a 3D Shepp & Logan phantom, according to a geometry" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkramp/rtkramp.ggo b/applications/rtkramp/rtkramp.ggo index 5a2723341..fdb1bd080 100644 --- a/applications/rtkramp/rtkramp.ggo +++ b/applications/rtkramp/rtkramp.ggo @@ -1,4 +1,3 @@ -package "rtkramp" purpose "Reads raw projection images, converts to attenuation, ramp filters and stacks them into a single output image file" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkrayboxintersection/rtkrayboxintersection.ggo b/applications/rtkrayboxintersection/rtkrayboxintersection.ggo index 9f1afe42a..dc4f9516a 100644 --- a/applications/rtkrayboxintersection/rtkrayboxintersection.ggo +++ b/applications/rtkrayboxintersection/rtkrayboxintersection.ggo @@ -1,4 +1,3 @@ -package "rtkrayboxintersection" purpose "Computes the intersection length between rays of 2D projections and a 3D volume." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkrayellipsoidintersection/rtkrayellipsoidintersection.ggo b/applications/rtkrayellipsoidintersection/rtkrayellipsoidintersection.ggo index bd0f992db..6cd148056 100644 --- a/applications/rtkrayellipsoidintersection/rtkrayellipsoidintersection.ggo +++ b/applications/rtkrayellipsoidintersection/rtkrayellipsoidintersection.ggo @@ -1,4 +1,3 @@ -package "rtkrayellipsoidintersection" purpose "Computes the intersection length between rays of 2D projections and a 3D ellipsoid" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkrayquadricintersection/rtkrayquadricintersection.ggo b/applications/rtkrayquadricintersection/rtkrayquadricintersection.ggo index 3c6dd94d5..26cc312ab 100644 --- a/applications/rtkrayquadricintersection/rtkrayquadricintersection.ggo +++ b/applications/rtkrayquadricintersection/rtkrayquadricintersection.ggo @@ -1,4 +1,3 @@ -package "rtkrayquadricintersection" purpose "Computes the intersection length between rays of 2D projections and a 3D quadric" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkregularizedconjugategradient/rtkregularizedconjugategradient.ggo b/applications/rtkregularizedconjugategradient/rtkregularizedconjugategradient.ggo index 9be1c0c79..994d76f91 100644 --- a/applications/rtkregularizedconjugategradient/rtkregularizedconjugategradient.ggo +++ b/applications/rtkregularizedconjugategradient/rtkregularizedconjugategradient.ggo @@ -1,4 +1,3 @@ -package "rtkregularizedconjugategradient" purpose "Alternates between conjugate gradient reconstruction and regularization" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtksart/rtksart.ggo b/applications/rtksart/rtksart.ggo index 80867d10f..de6e809d2 100644 --- a/applications/rtksart/rtksart.ggo +++ b/applications/rtksart/rtksart.ggo @@ -1,4 +1,3 @@ -package "rtksart" purpose "Reconstructs a 3D volume from a sequence of projections with Simulatenous Algebraic Reconstruction Technique [Andersen, 1984]." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkscatterglarecorrection/rtkscatterglarecorrection.ggo b/applications/rtkscatterglarecorrection/rtkscatterglarecorrection.ggo index 508b72d02..5280e5513 100644 --- a/applications/rtkscatterglarecorrection/rtkscatterglarecorrection.ggo +++ b/applications/rtkscatterglarecorrection/rtkscatterglarecorrection.ggo @@ -1,4 +1,3 @@ -package "rtkscatterglarecorrection" purpose "Reads projection images and correct them for scatter glare" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtksimulatedgeometry/rtksimulatedgeometry.ggo b/applications/rtksimulatedgeometry/rtksimulatedgeometry.ggo index 5902bf275..b22920c76 100644 --- a/applications/rtksimulatedgeometry/rtksimulatedgeometry.ggo +++ b/applications/rtksimulatedgeometry/rtksimulatedgeometry.ggo @@ -1,4 +1,3 @@ -package "rtksimulatedgeometry" purpose "Creates an RTK geometry file from simulated/regular trajectory. See https://docs.openrtk.org/en/latest/documentation/docs/Geometry.html for more information." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkspectraldenoiseprojections/rtkspectraldenoiseprojections.ggo b/applications/rtkspectraldenoiseprojections/rtkspectraldenoiseprojections.ggo index ddec5c32e..e8b918df1 100644 --- a/applications/rtkspectraldenoiseprojections/rtkspectraldenoiseprojections.ggo +++ b/applications/rtkspectraldenoiseprojections/rtkspectraldenoiseprojections.ggo @@ -1,4 +1,3 @@ -package "rtkspectraldenoiseprojections" purpose "Replaces aberrant pixels by the median in a small neighborhood around them. Pixels are aberrant if the difference between their value and the median is larger that threshold multiplier * the standard deviation in the neighborhood" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkspectralforwardmodel/rtkspectralforwardmodel.ggo b/applications/rtkspectralforwardmodel/rtkspectralforwardmodel.ggo index 52c04ba8a..ad354ed1c 100644 --- a/applications/rtkspectralforwardmodel/rtkspectralforwardmodel.ggo +++ b/applications/rtkspectralforwardmodel/rtkspectralforwardmodel.ggo @@ -1,4 +1,3 @@ -package "rtkspectralforwardmodel" purpose "Computes expected photon counts from incident spectrum, material attenuations, detector response and material-decomposed projections" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkspectralonestep/rtkspectralonestep.ggo b/applications/rtkspectralonestep/rtkspectralonestep.ggo index 92be87457..d2ca042a4 100644 --- a/applications/rtkspectralonestep/rtkspectralonestep.ggo +++ b/applications/rtkspectralonestep/rtkspectralonestep.ggo @@ -1,4 +1,3 @@ -package "rtkconjugategradient" purpose "Reconstructs a set of 3D volumes from a set of photon counts projections, using the method described by Mechlem et al. in IEEE TMI in 2017" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkspectralrooster/rtkspectralrooster.ggo b/applications/rtkspectralrooster/rtkspectralrooster.ggo index 5ecfe59f4..4d4ca6800 100644 --- a/applications/rtkspectralrooster/rtkspectralrooster.ggo +++ b/applications/rtkspectralrooster/rtkspectralrooster.ggo @@ -1,4 +1,3 @@ -package "rtkspectralrooster" purpose "Reconstructs a 3D + material vector volume from a vector projection stack, alternating between conjugate gradient optimization and regularization, including between materials" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkspectralsimplexdecomposition/rtkspectralsimplexdecomposition.ggo b/applications/rtkspectralsimplexdecomposition/rtkspectralsimplexdecomposition.ggo index 8d898c41d..c8bca0393 100644 --- a/applications/rtkspectralsimplexdecomposition/rtkspectralsimplexdecomposition.ggo +++ b/applications/rtkspectralsimplexdecomposition/rtkspectralsimplexdecomposition.ggo @@ -1,4 +1,3 @@ -package "rtkspectralsimplexdecomposition" purpose "Decomposes spectral projections into materials" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtksubselect/rtksubselect.ggo b/applications/rtksubselect/rtksubselect.ggo index d4132f7fa..f5c848690 100644 --- a/applications/rtksubselect/rtksubselect.ggo +++ b/applications/rtksubselect/rtksubselect.ggo @@ -1,4 +1,3 @@ -package "rtksubselect" purpose "Subselects a few projections from a list of projection files and a geometry file." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtktotalnuclearvariationdenoising/rtktotalnuclearvariationdenoising.ggo b/applications/rtktotalnuclearvariationdenoising/rtktotalnuclearvariationdenoising.ggo index f02f85461..f97efb3e1 100644 --- a/applications/rtktotalnuclearvariationdenoising/rtktotalnuclearvariationdenoising.ggo +++ b/applications/rtktotalnuclearvariationdenoising/rtktotalnuclearvariationdenoising.ggo @@ -1,4 +1,3 @@ -package "rtktotalnuclearvariationdenoising" purpose "Performs total nuclear variation denoising of a 3D + channels image." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtktotalvariationdenoising/rtktotalvariationdenoising.ggo b/applications/rtktotalvariationdenoising/rtktotalvariationdenoising.ggo index b65fabc53..1ccb3858c 100644 --- a/applications/rtktotalvariationdenoising/rtktotalvariationdenoising.ggo +++ b/applications/rtktotalvariationdenoising/rtktotalvariationdenoising.ggo @@ -1,4 +1,3 @@ -package "rtktotalvariationdenoising" purpose "Performs total variation denoising along the specified dimensions of a 3D image." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtktutorialapplication/rtktutorialapplication.ggo b/applications/rtktutorialapplication/rtktutorialapplication.ggo index 5928725fe..b3c7ed0aa 100644 --- a/applications/rtktutorialapplication/rtktutorialapplication.ggo +++ b/applications/rtktutorialapplication/rtktutorialapplication.ggo @@ -1,4 +1,3 @@ -package "rtktutorialapplication" purpose "A simple application you can use to train yourself to writing rtk programs" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkvarianobigeometry/rtkvarianobigeometry.ggo b/applications/rtkvarianobigeometry/rtkvarianobigeometry.ggo index 515c66190..bb2ed3bc7 100644 --- a/applications/rtkvarianobigeometry/rtkvarianobigeometry.ggo +++ b/applications/rtkvarianobigeometry/rtkvarianobigeometry.ggo @@ -1,4 +1,3 @@ -package "rtkvarianobigeometry" purpose "Creates an RTK geometry file from a Varian OBI acquisition." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkvarianprobeamgeometry/rtkvarianprobeamgeometry.ggo b/applications/rtkvarianprobeamgeometry/rtkvarianprobeamgeometry.ggo index bad3809a8..0008e5a8a 100644 --- a/applications/rtkvarianprobeamgeometry/rtkvarianprobeamgeometry.ggo +++ b/applications/rtkvarianprobeamgeometry/rtkvarianprobeamgeometry.ggo @@ -1,4 +1,3 @@ -package "rtkvarianobigeometry" purpose "Creates an RTK geometry file from a Varian ProBeam acquisition." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkvectorconjugategradient/rtkvectorconjugategradient.ggo b/applications/rtkvectorconjugategradient/rtkvectorconjugategradient.ggo index 3270fb10b..78267221c 100644 --- a/applications/rtkvectorconjugategradient/rtkvectorconjugategradient.ggo +++ b/applications/rtkvectorconjugategradient/rtkvectorconjugategradient.ggo @@ -1,4 +1,3 @@ -package "rtkvectorconjugategradient" purpose "Reconstructs a 3D volume from a sequence of projections with a conjugate gradient technique" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkwangdisplaceddetectorweighting/rtkwangdisplaceddetectorweighting.ggo b/applications/rtkwangdisplaceddetectorweighting/rtkwangdisplaceddetectorweighting.ggo index 8177fc2a7..406210838 100644 --- a/applications/rtkwangdisplaceddetectorweighting/rtkwangdisplaceddetectorweighting.ggo +++ b/applications/rtkwangdisplaceddetectorweighting/rtkwangdisplaceddetectorweighting.ggo @@ -1,4 +1,3 @@ -package "rtkwangdisplaceddetectorweighting" purpose "Weights projection stack with parker weights for displaced detector geometry." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkwarpedbackprojectsequence/rtkwarpedbackprojectsequence.ggo b/applications/rtkwarpedbackprojectsequence/rtkwarpedbackprojectsequence.ggo index 3742e9dd6..78bb5fade 100644 --- a/applications/rtkwarpedbackprojectsequence/rtkwarpedbackprojectsequence.ggo +++ b/applications/rtkwarpedbackprojectsequence/rtkwarpedbackprojectsequence.ggo @@ -1,4 +1,3 @@ -package "rtkwarpedbackprojectsequence" purpose "Backprojects a set of projections into a 4D volume, based on a respiratory/cardiac signal, and taking an a priori motion into account" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkwarpedforwardprojectsequence/rtkwarpedforwardprojectsequence.ggo b/applications/rtkwarpedforwardprojectsequence/rtkwarpedforwardprojectsequence.ggo index a83ea1806..f005f55ad 100644 --- a/applications/rtkwarpedforwardprojectsequence/rtkwarpedforwardprojectsequence.ggo +++ b/applications/rtkwarpedforwardprojectsequence/rtkwarpedforwardprojectsequence.ggo @@ -1,4 +1,3 @@ -package "rtkwarpedforwardprojectsequence" purpose "Projects a volume according to a geometry file." option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkwaveletsdenoising/rtkwaveletsdenoising.ggo b/applications/rtkwaveletsdenoising/rtkwaveletsdenoising.ggo index 5c12f7ca5..02f81e79e 100644 --- a/applications/rtkwaveletsdenoising/rtkwaveletsdenoising.ggo +++ b/applications/rtkwaveletsdenoising/rtkwaveletsdenoising.ggo @@ -1,4 +1,3 @@ -package "rtkwaveletsdenoising" purpose "Denoises a volume using Daubechies wavelets soft thresholding" option "verbose" v "Verbose execution" flag off diff --git a/applications/rtkxradgeometry/rtkxradgeometry.ggo b/applications/rtkxradgeometry/rtkxradgeometry.ggo index b393f44c5..64ecf737c 100644 --- a/applications/rtkxradgeometry/rtkxradgeometry.ggo +++ b/applications/rtkxradgeometry/rtkxradgeometry.ggo @@ -1,4 +1,3 @@ -package "rtkxradgeometry" purpose "Creates an RTK geometry file from an acquisition exported on the XRad system." option "verbose" v "Verbose execution" flag off diff --git a/cmake/FindGengetopt.cmake b/cmake/FindGengetopt.cmake index 081ca66eb..a71038146 100644 --- a/cmake/FindGengetopt.cmake +++ b/cmake/FindGengetopt.cmake @@ -64,6 +64,7 @@ macro (WRAP_GGO GGO_SRCS) --unamed-opts --conf-parser --include-getopt + --set-package ${CMAKE_PROJECT_NAME} DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/${FIRST_GGO_BASEFILENAME} ) set(${GGO_SRCS} ${${GGO_SRCS}} ${GGO_OUTPUT})