model_checkpoint.py

# Copyright The PyTorch Lightning team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

"""
Model Checkpointing
===================

Automatically save model checkpoints during training.

"""

import os
import re
import yaml
from copy import deepcopy
from typing import Any, Dict, Optional, Union
from pathlib import Path

import numpy as np
import torch
from pytorch_lightning import _logger as log
from pytorch_lightning.callbacks.base import Callback
from pytorch_lightning.utilities import rank_zero_only, rank_zero_warn, rank_zero_info
from pytorch_lightning.utilities.cloud_io import get_filesystem
from pytorch_lightning.utilities.exceptions import MisconfigurationException


class ModelCheckpoint(Callback):
    r"""
    Save the model after every epoch by monitoring a quantity.

    After training finishes, use :attr:`best_model_path` to retrieve the path to the
    best checkpoint file and :attr:`best_model_score` to retrieve its score.

    Args:
        filepath: path to save the model file.

            .. warning:: .. deprecated:: 1.0

               Use ``dirpath`` + ``filename`` instead. Will be removed in v1.2

        monitor: quantity to monitor. By default it is ``None`` which saves a checkpoint only for the last epoch.
        verbose: verbosity mode. Default: ``False``.
        save_last: When ``True``, always saves the model at the end of the epoch to
            a file `last.ckpt`. Default: ``None``.
        save_top_k: if ``save_top_k == k``,
            the best k models according to
            the quantity monitored will be saved.
            if ``save_top_k == 0``, no models are saved.
            if ``save_top_k == -1``, all models are saved.
            Please note that the monitors are checked every `period` epochs.
            if ``save_top_k >= 2`` and the callback is called multiple
            times inside an epoch, the name of the saved file will be
            appended with a version count starting with `v0`.
        mode: one of {auto, min, max}.
            If ``save_top_k != 0``, the decision
            to overwrite the current save file is made
            based on either the maximization or the
            minimization of the monitored quantity. For `val_acc`,
            this should be `max`, for `val_loss` this should
            be `min`, etc. In `auto` mode, the direction is
            automatically inferred from the name of the monitored quantity.
        save_weights_only: if ``True``, then only the model's weights will be
            saved (``model.save_weights(filepath)``), else the full model
            is saved (``model.save(filepath)``).
        period: Interval (number of epochs) between checkpoints.
        prefix: A string to put at the beginning of checkpoint filename.

            .. warning::
               This argument has been deprecated in v1.1 and will be removed in v1.3

        dirpath: directory to save the model file.

            Example::

                # custom path
                # saves a file like: my/path/epoch=0.ckpt
                >>> checkpoint_callback = ModelCheckpoint(dirpath='my/path/')

            By default, dirpath is ``None`` and will be set at runtime to the location
            specified by :class:`~pytorch_lightning.trainer.trainer.Trainer`'s
            :paramref:`~pytorch_lightning.trainer.trainer.Trainer.default_root_dir` or
            :paramref:`~pytorch_lightning.trainer.trainer.Trainer.weights_save_path` arguments,
            and if the Trainer uses a logger, the path will also contain logger name and version.

        filename: checkpoint filename. Can contain named formatting options to be auto-filled.

            Example::

                # save any arbitrary metrics like `val_loss`, etc. in name
                # saves a file like: my/path/epoch=2-val_loss=0.02-other_metric=0.03.ckpt
                >>> checkpoint_callback = ModelCheckpoint(
                ...     dirpath='my/path',
                ...     filename='{epoch}-{val_loss:.2f}-{other_metric:.2f}'
                ... )

            By default, filename is ``None`` and will be set to ``'{epoch}-{step}'``.


    Example::

        >>> from pytorch_lightning import Trainer
        >>> from pytorch_lightning.callbacks import ModelCheckpoint

        # saves checkpoints to 'my/path/' at every epoch
        >>> checkpoint_callback = ModelCheckpoint(dirpath='my/path/')
        >>> trainer = Trainer(callbacks=[checkpoint_callback])

        # save epoch and val_loss in name
        # saves a file like: my/path/sample-mnist-epoch=02-val_loss=0.32.ckpt
        >>> checkpoint_callback = ModelCheckpoint(
        ...     monitor='val_loss',
        ...     dirpath='my/path/',
        ...     filename='sample-mnist-{epoch:02d}-{val_loss:.2f}'
        ... )

        # retrieve the best checkpoint after training
        checkpoint_callback = ModelCheckpoint(dirpath='my/path/')
        trainer = Trainer(callbacks=[checkpoint_callback])
        model = ...
        trainer.fit(model)
        checkpoint_callback.best_model_path
    """

    CHECKPOINT_JOIN_CHAR = "-"
    CHECKPOINT_NAME_LAST = "last"

    def __init__(
        self,
        filepath: Optional[str] = None,
        monitor: Optional[str] = None,
        verbose: bool = False,
        save_last: Optional[bool] = None,
        save_top_k: Optional[int] = None,
        save_weights_only: bool = False,
        mode: str = "auto",
        period: int = 1,
        prefix: str = "",
        dirpath: Optional[Union[str, Path]] = None,
        filename: Optional[str] = None,
    ):
        super().__init__()
        self.monitor = monitor
        self.verbose = verbose
        self.save_last = save_last
        self.save_top_k = save_top_k
        self.save_weights_only = save_weights_only
        self.period = period
        self.last_global_step_saved = -1
        self.prefix = prefix
        self.current_score = None
        self.best_k_models = {}
        self.kth_best_model_path = ""
        self.best_model_score = None
        self.best_model_path = ""
        self.last_model_path = ""
        self.save_function = None
        self.warned_result_obj = False

        if save_top_k is None and monitor is not None:
            self.save_top_k = 1

        if prefix:
            rank_zero_warn(
                'Argument `prefix` is deprecated in v1.1 and will be removed in v1.3.'
                ' Please prepend your prefix in `filename` instead.', DeprecationWarning
            )

        self.__init_monitor_mode(monitor, mode)
        self.__init_ckpt_dir(filepath, dirpath, filename, save_top_k)
        self.__validate_init_configuration()

    def on_pretrain_routine_start(self, trainer, pl_module):
        """
        When pretrain routine starts we build the ckpt dir on the fly
        """
        self.__resolve_ckpt_dir(trainer, pl_module)
        self.save_function = trainer.save_checkpoint

    def on_validation_end(self, trainer, pl_module):
        """
        checkpoints can be saved at the end of the val loop
        """
        self.save_checkpoint(trainer, pl_module)

    def on_save_checkpoint(self, trainer, pl_module) -> Dict[str, Any]:
        return {
            "monitor": self.monitor,
            "best_model_score": self.best_model_score,
            "best_model_path": self.best_model_path,
            "current_score": self.current_score,
        }

    def on_load_checkpoint(self, checkpointed_state: Dict[str, Any]):
        self.best_model_score = checkpointed_state["best_model_score"]
        self.best_model_path = checkpointed_state["best_model_path"]

    def save_checkpoint(self, trainer, pl_module):
        """
        Performs the main logic around saving a checkpoint.
        This method runs on all ranks, it is the responsibility of `self.save_function`
        to handle correct behaviour in distributed training, i.e., saving only on rank 0.
        """
        epoch = trainer.current_epoch
        global_step = trainer.global_step

        if (
            self.save_top_k == 0  # no models are saved
            or self.period < 1  # no models are saved
            or (epoch + 1) % self.period  # skip epoch
            or trainer.running_sanity_check  # don't save anything during sanity check
            or trainer.evaluating  # don't save anything during evaluation: might delete the checkpoint being evaluated
            or self.last_global_step_saved == global_step  # already saved at the last step
        ):
            return

        self._add_backward_monitor_support(trainer)
        self._validate_monitor_key(trainer)

        # track epoch when ckpt was last checked
        self.last_global_step_saved = global_step

        # what can be monitored
        monitor_candidates = self._monitor_candidates(trainer)

        # ie: path/val_loss=0.5.ckpt
        filepath = self._get_metric_interpolated_filepath_name(monitor_candidates, epoch, global_step)

        # callback supports multiple simultaneous modes
        # here we call each mode sequentially
        # Mode 1: save all checkpoints OR only the top k
        if self.save_top_k:
            self._save_top_k_checkpoints(monitor_candidates, trainer, pl_module, filepath)

        # Mode 2: save the last checkpoint
        self._save_last_checkpoint(trainer, pl_module, monitor_candidates, filepath)

    def __validate_init_configuration(self):
        if self.save_top_k is not None and self.save_top_k < -1:
            raise MisconfigurationException(
                f'Invalid value for save_top_k={self.save_top_k}. Must be None or >= -1'
            )
        if self.monitor is None:
            # None: save last epoch, -1: save all epochs, 0: nothing is saved
            if self.save_top_k not in [None, -1, 0]:
                raise MisconfigurationException(
                    f'ModelCheckpoint(save_top_k={self.save_top_k}, monitor=None) is not a valid'
                    ' configuration. No quantity for top_k to track.'
                )
            if self.save_last:
                rank_zero_warn(
                    'ModelCheckpoint(save_last=True, monitor=None) is a redundant configuration.'
                    ' You can save the last checkpoint with ModelCheckpoint(save_top_k=None, monitor=None).'
                )

    def __init_ckpt_dir(self, filepath, dirpath, filename, save_top_k):
        if filepath:
            if (dirpath or filename):
                raise MisconfigurationException(
                    'You have set all three path/name inputs which are not feasible.'
                    f' You have to choose either filepath={filepath} OR dirpath={dirpath}'
                    f' and filename={filename} configuration.'
                )

            rank_zero_warn(
                'Argument `filepath` is deprecated in v1.0 and will be removed in v1.2.'
                ' Please use `dirpath` and `filename` instead.', DeprecationWarning
            )

            _fs = get_filesystem(filepath)

            if _fs.isdir(filepath):
                dirpath, filename = filepath, None
            else:
                if _fs.protocol == 'file':
                    filepath = os.path.realpath(filepath)
                dirpath, filename = os.path.split(filepath)

        self._fs = get_filesystem(str(dirpath) if dirpath else '')

        if (
            save_top_k is not None
            and save_top_k > 0
            and dirpath is not None
            and self._fs.isdir(dirpath)
            and len(self._fs.ls(dirpath)) > 0
        ):
            rank_zero_warn(
                f"Checkpoint directory {dirpath} exists and is not empty. With save_top_k={save_top_k},"
                " all files in this directory will be deleted when a checkpoint is saved!"
            )

        if dirpath and self._fs.protocol == 'file':
            dirpath = os.path.realpath(dirpath)

        self.dirpath: Union[str, None] = dirpath or None
        self.filename = filename or None

    def __init_monitor_mode(self, monitor, mode):
        torch_inf = torch.tensor(np.Inf)
        mode_dict = {
            "min": (torch_inf, "min"),
            "max": (-torch_inf, "max"),
            "auto": (-torch_inf, "max")
            if monitor is not None and ("acc" in monitor or monitor.startswith("fmeasure"))
            else (torch_inf, "min"),
        }

        if mode not in mode_dict:
            rank_zero_warn(
                f"ModelCheckpoint mode {mode} is unknown, fallback to auto mode",
                RuntimeWarning,
            )
            mode = "auto"

        self.kth_value, self.mode = mode_dict[mode]

    @rank_zero_only
    def _del_model(self, filepath: str):
        if self._fs.exists(filepath):
            self._fs.rm(filepath)
            log.debug(f"Removed checkpoint: {filepath}")

    def _save_model(self, filepath: str, trainer, pl_module):
        # in debugging, track when we save checkpoints
        trainer.dev_debugger.track_checkpointing_history(filepath)

        # make paths
        if trainer.is_global_zero:
            self._fs.makedirs(os.path.dirname(filepath), exist_ok=True)

        # delegate the saving to the trainer
        if self.save_function is not None:
            self.save_function(filepath, self.save_weights_only)
        else:
            raise ValueError(".save_function() not set")

    def check_monitor_top_k(self, current) -> bool:
        if current is None:
            return False

        if self.save_top_k == -1:
            return True

        less_than_k_models = len(self.best_k_models) < self.save_top_k
        if less_than_k_models:
            return True

        if not isinstance(current, torch.Tensor):
            rank_zero_warn(
                f"{current} is supposed to be a `torch.Tensor`. Saving checkpoint may not work correctly."
                f" HINT: check the value of {self.monitor} in your validation loop",
                RuntimeWarning,
            )
            current = torch.tensor(current)

        monitor_op = {"min": torch.lt, "max": torch.gt}[self.mode]
        return monitor_op(current, self.best_k_models[self.kth_best_model_path]).item()

    @classmethod
    def _format_checkpoint_name(
        cls,
        filename: Optional[str],
        epoch: int,
        step: int,
        metrics: Dict[str, Any],
        prefix: str = "",
    ) -> str:
        if not filename:
            # filename is not set, use default name
            filename = "{epoch}" + cls.CHECKPOINT_JOIN_CHAR + "{step}"

        # check and parse user passed keys in the string
        groups = re.findall(r"(\{.*?)[:\}]", filename)
        if len(groups) >= 0:
            metrics.update({"epoch": epoch, 'step': step})
            for group in groups:
                name = group[1:]
                filename = filename.replace(group, name + "={" + name)
                if name not in metrics:
                    metrics[name] = 0
            filename = filename.format(**metrics)

        if prefix:
            filename = cls.CHECKPOINT_JOIN_CHAR.join([prefix, filename])

        return filename

    def format_checkpoint_name(
        self, epoch: int, step: int, metrics: Dict[str, Any], ver: Optional[int] = None
    ) -> str:
        """Generate a filename according to the defined template.

        Example::

            >>> tmpdir = os.path.dirname(__file__)
            >>> ckpt = ModelCheckpoint(dirpath=tmpdir, filename='{epoch}')
            >>> os.path.basename(ckpt.format_checkpoint_name(0, 1, metrics={}))
            'epoch=0.ckpt'
            >>> ckpt = ModelCheckpoint(dirpath=tmpdir, filename='{epoch:03d}')
            >>> os.path.basename(ckpt.format_checkpoint_name(5, 2, metrics={}))
            'epoch=005.ckpt'
            >>> ckpt = ModelCheckpoint(dirpath=tmpdir, filename='{epoch}-{val_loss:.2f}')
            >>> os.path.basename(ckpt.format_checkpoint_name(2, 3, metrics=dict(val_loss=0.123456)))
            'epoch=2-val_loss=0.12.ckpt'
            >>> ckpt = ModelCheckpoint(dirpath=tmpdir, filename='{missing:d}')
            >>> os.path.basename(ckpt.format_checkpoint_name(0, 4, metrics={}))
            'missing=0.ckpt'
            >>> ckpt = ModelCheckpoint(filename='{step}')
            >>> os.path.basename(ckpt.format_checkpoint_name(0, 0, {}))
            'step=0.ckpt'

        """
        filename = self._format_checkpoint_name(
            self.filename, epoch, step, metrics, prefix=self.prefix
        )
        if ver is not None:
            filename = self.CHECKPOINT_JOIN_CHAR.join((filename, f"v{ver}"))
        ckpt_name = f"{filename}.ckpt"
        return os.path.join(self.dirpath, ckpt_name) if self.dirpath else ckpt_name

    def __resolve_ckpt_dir(self, trainer, pl_module):
        """
        Determines model checkpoint save directory at runtime. References attributes from the
        trainer's logger to determine where to save checkpoints.
        The base path for saving weights is set in this priority:

        1.  Checkpoint callback's path (if passed in)
        2.  The default_root_dir from trainer if trainer has no logger
        3.  The weights_save_path from trainer, if user provides it
        4.  User provided weights_saved_path

        The base path gets extended with logger name and version (if these are available)
        and subfolder "checkpoints".
        """
        if self.dirpath is not None:
            return  # short circuit

        if trainer.logger is not None:
            if trainer.weights_save_path != trainer.default_root_dir:
                # the user has changed weights_save_path, it overrides anything
                save_dir = trainer.weights_save_path
            else:
                save_dir = trainer.logger.save_dir or trainer.default_root_dir

            version = (
                trainer.logger.version
                if isinstance(trainer.logger.version, str)
                else f"version_{trainer.logger.version}"
            )

            version, name = trainer.accelerator_backend.broadcast((version, trainer.logger.name))

            ckpt_path = os.path.join(
                save_dir, name, version, "checkpoints"
            )
        else:
            ckpt_path = os.path.join(trainer.weights_save_path, "checkpoints")

        self.dirpath = ckpt_path

        if trainer.is_global_zero:
            self._fs.makedirs(self.dirpath, exist_ok=True)

    def _add_backward_monitor_support(self, trainer):
        metrics = trainer.logger_connector.callback_metrics

        # backward compatibility... need to deprecate
        if self.monitor is None and 'val_loss' in metrics:
            self.monitor = 'val_loss'

        if self.monitor is None and 'checkpoint_on' in metrics:
            self.monitor = 'checkpoint_on'

        if self.save_top_k is None and self.monitor is not None:
            self.save_top_k = 1

    def _validate_monitor_key(self, trainer):
        metrics = trainer.logger_connector.callback_metrics

        # validate metric
        if self.monitor is not None and not self._is_valid_monitor_key(metrics):
            m = (
                f"ModelCheckpoint(monitor='{self.monitor}') not found in the returned metrics:"
                f" {list(metrics.keys())}. "
                f"HINT: Did you call self.log('{self.monitor}', tensor) in the LightningModule?"
            )
            raise MisconfigurationException(m)

    def _get_metric_interpolated_filepath_name(self, ckpt_name_metrics: Dict[str, Any], epoch: int, step: int):
        filepath = self.format_checkpoint_name(epoch, step, ckpt_name_metrics)
        version_cnt = 0
        while self._fs.exists(filepath):
            filepath = self.format_checkpoint_name(epoch, step, ckpt_name_metrics, ver=version_cnt)
            # this epoch called before
            version_cnt += 1
        return filepath

    def _monitor_candidates(self, trainer):
        ckpt_name_metrics = deepcopy(trainer.logger_connector.logged_metrics)
        ckpt_name_metrics.update(trainer.logger_connector.callback_metrics)
        ckpt_name_metrics.update(trainer.logger_connector.progress_bar_metrics)
        ckpt_name_metrics.update({"step": trainer.global_step, "epoch": trainer.current_epoch})
        return ckpt_name_metrics

    def _save_last_checkpoint(self, trainer, pl_module, ckpt_name_metrics, filepath):
        should_save_last = self.monitor is None or self.save_last
        if not should_save_last:
            return

        last_filepath = filepath

        # when user ALSO asked for the 'last.ckpt' change the name
        if self.save_last:
            last_filepath = self._format_checkpoint_name(
                self.CHECKPOINT_NAME_LAST,
                trainer.current_epoch,
                trainer.global_step,
                ckpt_name_metrics,
                prefix=self.prefix
            )
            last_filepath = os.path.join(self.dirpath, f"{last_filepath}.ckpt")

        self._save_model(last_filepath, trainer, pl_module)
        if (
                self.last_model_path
                and self.last_model_path != last_filepath
                and (self.save_top_k != -1 or self.save_last)
                and trainer.is_global_zero
        ):
            self._del_model(self.last_model_path)
        self.last_model_path = last_filepath

        if self.monitor is None:
            self.best_model_path = self.last_model_path

    def _save_top_k_checkpoints(self, metrics, trainer, pl_module, filepath):
        current = metrics.get(self.monitor)
        epoch = metrics.get("epoch")
        step = metrics.get("step")

        if not isinstance(current, torch.Tensor) and current is not None:
            current = torch.tensor(current, device=pl_module.device)

        if self.check_monitor_top_k(current):
            self._update_best_and_save(filepath, current, epoch, step, trainer, pl_module)
        elif self.verbose:
            rank_zero_info(
                f"Epoch {epoch:d}, step {step:d}: {self.monitor} was not in top {self.save_top_k}"
            )

    def _is_valid_monitor_key(self, metrics):
        return self.monitor in metrics or len(metrics) == 0

    def _update_best_and_save(
        self,
        filepath: str,
        current: torch.Tensor,
        epoch: int,
        step: int,
        trainer,
        pl_module,
    ):
        k = len(self.best_k_models) + 1 if self.save_top_k == -1 else self.save_top_k

        del_list = []
        if len(self.best_k_models) == k and k > 0:
            delpath = self.kth_best_model_path
            self.best_k_models.pop(self.kth_best_model_path)
            del_list.append(delpath)

        # do not save nan, replace with +/- inf
        if torch.isnan(current):
            current = torch.tensor(float('inf' if self.mode == "min" else '-inf'))

        # save the current score
        self.current_score = current
        self.best_k_models[filepath] = current

        if len(self.best_k_models) == k:
            # monitor dict has reached k elements
            _op = max if self.mode == "min" else min
            self.kth_best_model_path = _op(
                self.best_k_models, key=self.best_k_models.get
            )
            self.kth_value = self.best_k_models[self.kth_best_model_path]

        _op = min if self.mode == "min" else max
        self.best_model_path = _op(self.best_k_models, key=self.best_k_models.get)
        self.best_model_score = self.best_k_models[self.best_model_path]

        if self.verbose:
            rank_zero_info(
                f"Epoch {epoch:d}, global step {step:d}: {self.monitor} reached {current:0.5f}"
                f' (best {self.best_model_score:0.5f}), saving model to "{filepath}" as top {k}'
            )
        self._save_model(filepath, trainer, pl_module)

        for cur_path in del_list:
            if cur_path != filepath:
                self._del_model(cur_path)

    def to_yaml(self, filepath: Optional[Union[str, Path]] = None):
        """
        Saves the `best_k_models` dict containing the checkpoint
        paths with the corresponding scores to a YAML file.
        """
        best_k = {k: v.item() for k, v in self.best_k_models.items()}
        if filepath is None:
            filepath = os.path.join(self.dirpath, "best_k_models.yaml")
        with self._fs.open(filepath, "w") as fp:
            yaml.dump(best_k, fp)