From 27c2dc49aa3dadd56caf400f4822d7606e0dcdc3 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 8 Jul 2024 19:09:23 +0000 Subject: [PATCH] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci Signed-off-by: Jose Raniery --- plugins/slicer/MONAILabel/MONAILabel.py | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/plugins/slicer/MONAILabel/MONAILabel.py b/plugins/slicer/MONAILabel/MONAILabel.py index 78921e5dd..5ca32f31d 100644 --- a/plugins/slicer/MONAILabel/MONAILabel.py +++ b/plugins/slicer/MONAILabel/MONAILabel.py @@ -1415,8 +1415,8 @@ def onUploadImage(self, init_sample=True, session=False): start = time.time() shNode = slicer.vtkMRMLSubjectHierarchyNode.GetSubjectHierarchyNode(slicer.mrmlScene) volumeShItemID = shNode.GetItemByDataNode(volumeNode) - - seriesInstanceUID = shNode.GetItemUID(volumeShItemID, 'DICOM') + + seriesInstanceUID = shNode.GetItemUID(volumeShItemID, "DICOM") instUids = slicer.dicomDatabase.instancesForSeries(seriesInstanceUID) studyInstanceUID = slicer.dicomDatabase.instanceValue(instUids[0], "0020,000D") @@ -1437,19 +1437,19 @@ def onUploadImage(self, init_sample=True, session=False): # if includeDicomFilesCheckBox is marked, save original dicom files on the client if slicer.util.settingsValue("MONAILabel/includeDicomFiles", False, converter=slicer.util.toBool): dcm_filenames = self.get_dicom_files() - + # send to server only the first slice due to transfer overhead dcm_filenames.sort() dcm_filenames = dcm_filenames[:1] - + report_progress_increment = round(last_report_progress / len(dcm_filenames), 1) for dcm_fullpath in dcm_filenames: - # set original study and series UIDs + # set original study and series UIDs dcm = dcmread(dcm_fullpath) dcm.StudyInstanceUID = studyInstanceUID dcm.SeriesInstanceUID = seriesInstanceUID dcm.save_as(dcm_fullpath) - + dcm_filename = dcm_fullpath.split("/")[-1] dcm_filename = ".".join(dcm_filename.split(".")[:-1]) self.logic.upload_image(dcm_fullpath, dcm_filename)