Error when running the pegs_calc Test Dataset #222
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PatrickReck01
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Hi,
when I am running the pgsc_calc tool with the test dataset, that comes with the tool (called 'cineca') I am getting this error:
Interestingly, I found a scorefile.txt file in the the pgsc_calc folder (path: /Users/patrickreck/.nextflow/assets/pgscatalog/pgsc_calc/assets/examples/scorefiles/scorefile.txt )
When I run the tool with this file set as the custom scoring file (with --scorefile [path from above] ) everything works and I get no errors.
What might be causing this?
I have some other issues with the: "CRITICAL Error: no target variants match any variants in scoring files" Error and maybe solving this will help me understand what's not working, so I am asking this in a separate thread.
Thanks in advance.
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