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Fix wave restarts and GEFS FHOUT/FHMAX #3009

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merged 15 commits into from
Oct 30, 2024

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WalterKolczynski-NOAA
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@WalterKolczynski-NOAA WalterKolczynski-NOAA commented Oct 16, 2024

Description

Fixes some issues that were preventing wave restarts from operating correctly.

First, the wave restart files were not being correctly linked from $DATA to $DATArestart. The files are placed in the root of $DATA instead of in ${DATA}/WAVE_RESTART, so now links for the individual files are created.

Second, the incorrect filenames were being searches for and copied as part of a rerun. Filenames were geared towards multigrid waves, which use the grid names, but single grid just uses a ww3. Since multigrid waves are deprecated in workflow and will soon be removed (#2637), these were updated only supporting the single-grid option.

These fixes allow forecast segments (and emergency restarts) to work correctly when waves are on.

Additionally, the FHMAX (and FHOUT) for perturbed GEFS members was being overwritten by config.efcs due to remnant code from when it was copied from the EnKF version. This interfered with the segment setting for those GEFS members.

Resolves #3001

Type of change

  • Bug fix (fixes something broken)
  • New feature (adds functionality)
  • Maintenance (code refactor, clean-up, new CI test, etc.)

Change characteristics

  • Is this a breaking change (a change in existing functionality)? NO
  • Does this change require a documentation update? NO
  • Does this change require an update to any of the following submodules? NO

How has this been tested?

  • S2SW forecast-only test with segments on Hercules

Checklist

  • Any dependent changes have been merged and published
  • My code follows the style guidelines of this project
  • I have performed a self-review of my own code
  • I have commented my code, particularly in hard-to-understand areas
  • I have documented my code, including function, input, and output descriptions
  • My changes generate no new warnings
  • New and existing tests pass with my changes
  • This change is covered by an existing CI test or a new one has been added
  • I have made corresponding changes to the system documentation if necessary

@WalterKolczynski-NOAA
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ATTN: @weihuang-jedi

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@aerorahul aerorahul left a comment

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I think there is an issue in the forecast_postdet.sh part. Also a suggestion to break that into 2 parts.

Fixes some issues that were preventing wave restarts from operating
correctly.

First, the wave restart files were not being correctly linked from
`$DATA` to `$DATArestart`. The files are placed in the root of
`$DATA` instead of in `${DATA}/WAVE_RESTART`, so now links for the
individual files are created.

Second, the incorrect filenames were being searches for and copied
as part of a rerun. Filenames were geared towards multigrid waves,
which use the grid names, but single grid just uses a `ww3`. Since
multigrid waves are deprecated in workflow and will soon be removed
(NOAA-EMC#2637), these were updated only supporting the single-grid option.

These fixes allow forecast segments (and emergency restarts) to
work correctly when waves are on.

Resolves NOAA-EMC#3001
Removes an unnecessary loop when staging wave restarts and stops
creating output links for restart files that were already copied
in as ICs.

Also updates FHMIN_WAV when running with segments to stop creating
unneeded links from earlier in the forecast period.
@WalterKolczynski-NOAA
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Will need to add in additional fixes for GEFS perturbed members, as they are ignoring the segments.

The gefs `config.efcs` still contained code from the enkf version
of the file that was overwriting the FHMAX set for segments.
@WalterKolczynski-NOAA WalterKolczynski-NOAA changed the title Fix wave restarts Fix wave restarts and GEFS FHOUT/FHMAX Oct 17, 2024
@weihuang-jedi
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I have test the PR code on Hercules. I worked as expected. Fixed the segments issue.
Thanks @WalterKolczynski-NOAA !

@WalterKolczynski-NOAA WalterKolczynski-NOAA added CI-Hera-Ready **CM use only** PR is ready for CI testing on Hera CI-Hercules-Ready **CM use only** PR is ready for CI testing on Hercules and removed CI-Hera-Ready **CM use only** PR is ready for CI testing on Hera labels Oct 22, 2024
@emcbot emcbot added CI-Hercules-Building **Bot use only** CI testing is cloning/building on Hercules and removed CI-Hercules-Ready **CM use only** PR is ready for CI testing on Hercules labels Oct 22, 2024
@TerrenceMcGuinness-NOAA
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Jenkins controller had technical difficulties and was off line. Clearing Hercules is under currently under maintenance.

@TerrenceMcGuinness-NOAA TerrenceMcGuinness-NOAA removed the CI-Hercules-Building **Bot use only** CI testing is cloning/building on Hercules label Oct 23, 2024
@WalterKolczynski-NOAA WalterKolczynski-NOAA added the CI-Hera-Ready **CM use only** PR is ready for CI testing on Hera label Oct 23, 2024
@emcbot emcbot added CI-Hera-Building **Bot use only** CI testing is cloning/building on Hera CI-Hera-Running **Bot use only** CI testing on Hera for this PR is in-progress and removed CI-Hera-Ready **CM use only** PR is ready for CI testing on Hera CI-Hera-Building **Bot use only** CI testing is cloning/building on Hera labels Oct 23, 2024
@emcbot emcbot added the CI-Hercules-Passed **Bot use only** CI testing on Hercules for this PR has completed successfully label Oct 28, 2024
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emcbot commented Oct 28, 2024

CI Passed on Hercules in Build# 8
Built and ran in directory /work2/noaa/global/CI/HERCULES/3009


Experiment C48_ATM_17ee741f Completed 2 Cycles: *SUCCESS* at Mon Oct 28 03:11:28 CDT 2024
Experiment C96_S2SWA_gefs_replay_ics_17ee741f Completed 1 Cycles: *SUCCESS* at Mon Oct 28 03:17:33 CDT 2024
Experiment C96_atm3DVar_17ee741f Completed 3 Cycles: *SUCCESS* at Mon Oct 28 04:18:05 CDT 2024
Experiment C96C48_hybatmDA_17ee741f Completed 3 Cycles: *SUCCESS* at Mon Oct 28 04:18:15 CDT 2024
Experiment C48_S2SW_17ee741f Completed 2 Cycles: *SUCCESS* at Mon Oct 28 05:12:31 CDT 2024
Experiment C48_S2SWA_gefs_17ee741f Completed 1 Cycles: *SUCCESS* at Mon Oct 28 05:25:39 CDT 2024

@DavidHuber-NOAA
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I'm going to manually run just the GEFS tests on Hera.

@DavidHuber-NOAA DavidHuber-NOAA added the CI-Hera-Running **Bot use only** CI testing on Hera for this PR is in-progress label Oct 28, 2024
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All tests passed on Hera, but after a conversation with Walter and Kate, we will wait to merge this until an additional fix for the stage_ic job goes in.

@DavidHuber-NOAA DavidHuber-NOAA added CI-Hera-Passed **Bot use only** CI testing on Hera for this PR has completed successfully and removed CI-Hera-Running **Bot use only** CI testing on Hera for this PR is in-progress labels Oct 28, 2024
- Add elif for prior wave restart filename for
when the new filename is not available in IC set.

Refs NOAA-EMC#3001
@WalterKolczynski-NOAA WalterKolczynski-NOAA removed CI-Hera-Passed **Bot use only** CI testing on Hera for this PR has completed successfully CI-Hercules-Passed **Bot use only** CI testing on Hercules for this PR has completed successfully labels Oct 30, 2024
@WalterKolczynski-NOAA WalterKolczynski-NOAA added the CI-Hercules-Ready **CM use only** PR is ready for CI testing on Hercules label Oct 30, 2024
@emcbot emcbot added CI-Hercules-Building **Bot use only** CI testing is cloning/building on Hercules CI-Hercules-Running **Bot use only** CI testing on Hercules for this PR is in-progress CI-Hercules-Passed **Bot use only** CI testing on Hercules for this PR has completed successfully and removed CI-Hercules-Ready **CM use only** PR is ready for CI testing on Hercules CI-Hercules-Building **Bot use only** CI testing is cloning/building on Hercules CI-Hercules-Running **Bot use only** CI testing on Hercules for this PR is in-progress labels Oct 30, 2024
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emcbot commented Oct 30, 2024

CI Passed on Hercules in Build# 1
Built and ran in directory /work2/noaa/global/CI/HERCULES/3009


Experiment C96_S2SWA_gefs_replay_ics_01b0c2f9 Completed 1 Cycles: *SUCCESS* at Wed Oct 30 07:06:20 CDT 2024
Experiment C48_ATM_01b0c2f9 Completed 2 Cycles: *SUCCESS* at Wed Oct 30 07:24:33 CDT 2024
Experiment C48_S2SW_01b0c2f9 Completed 2 Cycles: *SUCCESS* at Wed Oct 30 08:18:52 CDT 2024
Experiment C96_atm3DVar_01b0c2f9 Completed 3 Cycles: *SUCCESS* at Wed Oct 30 08:31:05 CDT 2024
Experiment C96C48_hybatmDA_01b0c2f9 Completed 3 Cycles: *SUCCESS* at Wed Oct 30 08:31:12 CDT 2024
Experiment C48_S2SWA_gefs_01b0c2f9 Completed 1 Cycles: *SUCCESS* at Wed Oct 30 09:26:17 CDT 2024

@DavidHuber-NOAA DavidHuber-NOAA merged commit 5bb3f86 into NOAA-EMC:develop Oct 30, 2024
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danholdaway added a commit to danholdaway/global-workflow that referenced this pull request Jan 27, 2025
* develop:
  Remove WAFS files and references from `develop` (NOAA-EMC#3263)
  fix intel stack version number on c5 (NOAA-EMC#3258)
  Update gsi_monitor and ufs_utils hashes to recent hashes for C5/C6 build and run (NOAA-EMC#3252)
  Enable DA cycling on gaea C5/C6 (NOAA-EMC#3255)
  Copy post-processed sea ice increment for diagnostics (NOAA-EMC#3235)
  Only run METplus in the 3Dvar tests (NOAA-EMC#3245)
  Clone, build, and run C48_ATM and C48_S2SW on Gaea C5 and C6 (NOAA-EMC#3106)
  Add echgres as a dependency only for RUN=enkfgdas, not enkfgfs (NOAA-EMC#3246)
  Add domain level to wave gridded COM path (NOAA-EMC#3137)
  CI JJOB Tests using CMake (NOAA-EMC#3214)
  Make assorted updates to waves (NOAA-EMC#3190)
  Move WCOSS2 LD_LIBRARY_PATH patches to load_ufsda_modules.sh (NOAA-EMC#3236)
  Adding a gefs_arch task to GEFS workflow (NOAA-EMC#3211)
  Add additional GEFS variables needed for AI/ML applications  (NOAA-EMC#3221)
  Add bmat task dependency to marine LETKF task (NOAA-EMC#3224)
  Resolve bug with LMOD_TMOD_FIND_FIRST setting affecting build on WCOSS2 (NOAA-EMC#3229)
  Reinstate product groups (NOAA-EMC#3208)
  Additional fixes for downstream jobs (NOAA-EMC#3187)
  Turn IAU off during staging job for cold start experiments (NOAA-EMC#3215)
  Update the gdas.cd hash and enable GDASApp to run on WCOSS2 (NOAA-EMC#3220)
  Update upload-artifact to v4 (NOAA-EMC#3216)
  Prevent duplicate case generation in generate_workflows.sh (NOAA-EMC#3217)
  Update g-w to cycle with C1152 ATM (NOAA-EMC#3206)
  Separate use of initial increment/perturbation file from REPLAY/+03 ICs  (NOAA-EMC#3119)
  Update gsi_enkf hash and gsi_ver (NOAA-EMC#3207)
  Remove cpus-per-task from APRUN_OCNANALECEN on WCOSS2 (NOAA-EMC#3212)
  Remove 5WAVH from AWIPS GRIB2 parm files (NOAA-EMC#3146)
  Remove multi-grid wave support (NOAA-EMC#3188)
  Add echgres as a dependency for earc (NOAA-EMC#3202)
  Ensure OCNRES and ICERES have 3 digits in the archive script (NOAA-EMC#3199)
  Set runtime shell requirements within Jenkins Pipeline (NOAA-EMC#3171)
  Add efcs and epos to ufs_hybatm xml (NOAA-EMC#3192) (NOAA-EMC#3193)
  Fix GEFS and SFS compile flags in build_all.sh (NOAA-EMC#3197)
  Remove early-cycle EnKF forecast (NOAA-EMC#3185)
  Fix mod_icec bug in atmos_prod (NOAA-EMC#3167)
  Create compute build option (NOAA-EMC#3186)
  Support global-workflow using Rocky 8 on CSPs (NOAA-EMC#2998)
  Change orog gravity wave drag scheme for grid sizes less than 10km (NOAA-EMC#3175)
  Switch snow DA to use 2DVar for deterministic and ensemble mean (NOAA-EMC#3163)
  Update compression options for GEFS history files (NOAA-EMC#3184)
  Update compression options for high res history files (NOAA-EMC#3178)
  Turn DO_TEST_MODE off (NOAA-EMC#3177)
  Hotfix for gdas_arch div/0 (NOAA-EMC#3169)
  Allow building of the ufs-weather-model, WW3 pre/post execs for GFS, GEFS, SFS in the same clone of global-workflow (NOAA-EMC#3098)
  Switch Aerosol DA to use JCB and Jedi class (NOAA-EMC#3125)
  Update ufs-weather-model to 2024-12-06 commit  (NOAA-EMC#3145)
  Enable traditional threading as an option (NOAA-EMC#3149)
  Update HPC_ACCOUNT on Hercules to fv3-cpu (NOAA-EMC#3164)
  Turn C96C48_ufs_hybatmDA and C48mx500_3DVarAOWCDA into a regression test (NOAA-EMC#3120)
  Update GSI analysis jobs to use COMIN/COMOUT (NOAA-EMC#3092)
  Update HPC Tier Definitions (NOAA-EMC#3138)
  Add marine hybrid envar (NOAA-EMC#3041)
  Archive the experiment directory along with git status/diff output (NOAA-EMC#3105)
  Use stochastic restart patterns on rerun (NOAA-EMC#3077)
  Point Jenkinsfile back to CI/ (NOAA-EMC#3139)
  Fix wave restart for cold start and add ic version file (NOAA-EMC#3112)
  Allow users to override the default account at setup time (NOAA-EMC#3127)
  Refactor gridded wave post (NOAA-EMC#3014)
  Update docs related to NOAA CSPs (NOAA-EMC#3043)
  Allow APP to differ between RUNs (NOAA-EMC#2943)
  Run one executable for soca2cice (instead of two) (NOAA-EMC#3118)
  Speed up GSI analysis jobs in CI testing (NOAA-EMC#3115)
  Make aerosol output frequency variable (NOAA-EMC#2982)
  Add new stations to GFS BUFR sounding products (NOAA-EMC#3107)
  JCB-based obs+bias staging, Jedi class updates, and marine B-matrix refactoring (NOAA-EMC#2992)
  Enable tapering of atm ens perts at the model top (NOAA-EMC#3097)
  Update JGDAS ENKF POST  job  (NOAA-EMC#3090)
  SFS Runs at C96mx100  (NOAA-EMC#2960)
  Move machine-based options from config.base to host files (NOAA-EMC#3053)
  Remove RUNDIRS before running CI cases to cover re-run events (NOAA-EMC#3076)
  CI GitHub pipeline (hotfix) update for fetching repo name (NOAA-EMC#3084)
  Update JGDAS ENKF ECEN job  (NOAA-EMC#3050)
  Update snow obs processing job (NOAA-EMC#3055)
  Update to action workflow pipeline in default repo for development  (NOAA-EMC#3062)
  Update to action workflow pipeline in default repo for development (NOAA-EMC#3061)
  Update workflow pipeline (NOAA-EMC#3060)
  PW CI pipeline update5 ready for review so it can be merged and tested (NOAA-EMC#3059)
  Revert "GitHub CI Pipeline update for debugging forked PR support" (NOAA-EMC#3057)
  GitHub CI Pipeline update for debugging forked PR support (NOAA-EMC#3056)
  Add more ocean variables for post-processing in GEFS (NOAA-EMC#2995)
  Auto provisioning of PW clusters from GitHub CI added (NOAA-EMC#3051)
  Fix the name of the TC tracker filenames in archive.py (NOAA-EMC#3030)
  Make wxflow links static instead of from link_workflow (NOAA-EMC#3008)
  Update global jdas enkf diag job with COMIN/COMOUT for COM prefix (NOAA-EMC#2959)
  Add run and finalize methods to marine LETKF task (NOAA-EMC#2944)
  Fix wave restarts and GEFS FHOUT/FHMAX (NOAA-EMC#3009)
  Disabling hyper-threading (NOAA-EMC#2965)
  GitHub Actions Pipeline Updates for Self-Hosted Runners on PW (NOAA-EMC#3018)
  CI jekninsfile update hotfix (NOAA-EMC#3038)
  Update gdas.cd (NOAA-EMC#2978)
  Add ability to add tag to pslots with generate_workflows (NOAA-EMC#3036)
  CI update to shell environment with HOMEgfs to HOME_GFS for systems that need the path (NOAA-EMC#3013)
  Quick updated to Jenkins (health check) launch script (NOAA-EMC#3033)
  Document the generate_workflows.sh script (NOAA-EMC#3028)
  Replace gfs_cyc with an interval (NOAA-EMC#2928)
  Hotfix: Fix generate_workflows.sh optional build flags (NOAA-EMC#3024)
  Add a tool to run multiple YAML cases locally (NOAA-EMC#3004)
  Hotfix: Correctly set overwrite option when specified (NOAA-EMC#3021)
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Possible bug on GEFS fcst segment
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