apichange_24to25.xml

<?xml version="1.0"?>
<all>
  <!-- -->
  <!-- This set of changes should update an existing parameter file from API 23 to API 24 -->
  <!-- -->
  <!-- Special mod types "variable_add": creates a new variable
		 "dimension_add": creates a new dimension
		 "variable_del": removes a variable, must include attribute "name" 
		 "variable_change": change values in the parameter, possibly including the name, and
                          this must also come with a name attribute as well -->
  <!-- To change a dimension. The easiest way to script this, is to delete the variables
		 that use it, delete the dimension. Re-add it with the new size, and then re-add
		 the variables -->
  <!-- -->
  
  <base_file>fates_params_default.cdl</base_file>
  <new_file>fates_params_default_api25.cdl</new_file>
  <pft_list> 1,2,3,4,5,6,7,8,9,10,11,12 </pft_list>
  <mods>
    <mod type="variable_del">
      <na> fates_cnp_fnrt_adapt_tscale </na>
    </mod>
    <mod type="variable_del">
      <na> fates_cnp_eca_vmax_nh4 </na>
    </mod>
    <mod type="variable_del">
      <na> fates_cnp_rd_vmax_n </na>
    </mod>
    <mod type="variable_del">
      <na> fates_cnp_eca_vmax_no3 </na>
    </mod>
    <mod type="variable_add">
      <na> fates_cnp_vmax_nh4 </na>
      <di> fates_pft </di>
      <un> gN/gC/s </un>
      <ln> maximum (potential) uptake rate of NH4 per gC of fineroot biomass (see main/EDPftvarcon.F90 vmax_nh4 for usage)</ln>
      <val> 2.5e-9, 2.5e-9, 2.5e-9, 2.5e-9, 2.5e-9, 2.5e-9, 2.5e-9, 2.5e-9, 2.5e-9, 2.5e-9, 2.5e-9, 2.5e-9 </val>
    </mod>
    <mod type="variable_add">
      <na> fates_cnp_vmax_no3 </na>
      <di> fates_pft </di>
      <un> gN/gC/s </un>
      <ln> maximum (potential) uptake rate of NO3 per gC of fineroot biomass (see main/EDPftvarcon.F90 vmax_no3 for usage)</ln>
      <val> 2.5e-9, 2.5e-9, 2.5e-9, 2.5e-9, 2.5e-9, 2.5e-9, 2.5e-9, 2.5e-9, 2.5e-9, 2.5e-9, 2.5e-9, 2.5e-9 </val>
    </mod>
    <mod type="variable_add">
      <na> fates_cnp_pid_kd </na>
      <di> fates_pft </di>
      <un> unknown </un>
      <ln> derivative constant of the PID controller on adaptive fine-root biomass </ln>
      <val> 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1, 0.1 </val>
    </mod>
    <mod type="variable_add">
      <na> fates_cnp_pid_ki </na>
      <di> fates_pft </di>
      <un> unknown </un>
      <ln> integral constant of the PID controller on adaptive fine-root biomass </ln>
      <val> 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0 </val>
    </mod>
     <mod type="variable_add">
      <na> fates_cnp_pid_kp </na>
      <di> fates_pft </di>
      <un> unknown </un>
      <ln> proportional constant of the PID controller on adaptive fine-root biomass </ln>
      <val> 5e-4, 5e-4, 5e-4, 5e-4, 5e-4, 5e-4, 5e-4, 5e-4, 5e-4, 5e-4, 5e-4, 5e-4  </val>
    </mod>
     <mod type="variable_change" name="fates_cnp_nfix1"> 
       <ln> fractional surcharge added to maintenance respiration that drives symbiotic fixation </ln>
       <un> fraction </un>
     </mod>
  </mods>
</all>