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Update dtc/develop from EMC develop 2020/06/29 #57

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merged 7 commits into from
Jun 30, 2020
Merged

Update dtc/develop from EMC develop 2020/06/29 #57

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9e3aedc
Update FV3 dynamic core to the GFDL 201912 released version (#58)
XiaqiongZhou-NOAA Jun 10, 2020
07f3e2b
GFS.v16.0.4 physics update (#144)
junwang-noaa Jun 12, 2020
4edc6cf
Jet build config update, Hera GNU support, FV3 dycore GNU bugfix (#151)
climbfuji Jun 22, 2020
dba56e5
Bugfix for regional runs when dycore is compiled in double precision …
climbfuji Jun 29, 2020
8ea3854
Merge branch 'develop' of https://github.com/ufs-community/ufs-weathe…
climbfuji Jun 29, 2020
0c6a8c5
Update .gitmodules and submodule pointer for fv3atm
climbfuji Jun 29, 2020
7870dd0
Revert change to .gitmodules and update submodule pointer for fv3atm
climbfuji Jun 30, 2020
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35 changes: 19 additions & 16 deletions CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -101,89 +101,92 @@ add_library(
FMS/amip_interp/amip_interp.F90
FMS/astronomy/astronomy.F90
FMS/axis_utils/axis_utils.F90
FMS/axis_utils/axis_utils2.F90
FMS/block_control/block_control.F90
FMS/column_diagnostics/column_diagnostics.F90
FMS/constants/constants.F90
FMS/coupler/atmos_ocean_fluxes.F90
FMS/coupler/coupler_types.F90
FMS/coupler/ensemble_manager.F90
FMS/data_override/data_override.F90
FMS/diag_integral/diag_integral.F90
FMS/diag_manager/diag_axis.F90
FMS/diag_manager/diag_data.F90
FMS/diag_manager/diag_grid.F90
FMS/diag_manager/diag_manager.F90
FMS/diag_manager/diag_manifest.F90
FMS/diag_manager/diag_output.F90
FMS/diag_manager/diag_table.F90
FMS/diag_manager/diag_util.F90
FMS/drifters/cloud_interpolator.F90
FMS/drifters/drifters.F90
FMS/drifters/drifters_comm.F90
FMS/drifters/drifters_core.F90
FMS/drifters/drifters.F90
FMS/drifters/drifters_input.F90
FMS/drifters/drifters_io.F90
FMS/drifters/quicksort.F90
FMS/exchange/stock_constants.F90
FMS/exchange/xgrid.F90
FMS/fft/fft99.F90
FMS/fft/fft.F90
FMS/field_manager/field_manager.F90
FMS/field_manager/fm_util.F90
FMS/fms/fms.F90
FMS/fms/fms_io.F90
FMS/fms2_io/blackboxio.F90
FMS/fms2_io/fms2_io.F90
FMS/fms2_io/fms_io_utils.F90
FMS/fms2_io/fms_netcdf_domain_io.F90
FMS/fms2_io/fms_netcdf_unstructured_domain_io.F90
FMS/fms2_io/netcdf_io.F90
FMS/horiz_interp/horiz_interp.F90
FMS/horiz_interp/horiz_interp_bicubic.F90
FMS/horiz_interp/horiz_interp_bilinear.F90
FMS/horiz_interp/horiz_interp_conserve.F90
FMS/horiz_interp/horiz_interp.F90
FMS/horiz_interp/horiz_interp_spherical.F90
FMS/horiz_interp/horiz_interp_type.F90
FMS/interpolator/interpolator.F90
FMS/memutils/memutils.F90
FMS/monin_obukhov/monin_obukhov.F90
FMS/monin_obukhov/monin_obukhov_kernel.F90
FMS/mosaic/gradient.F90
FMS/mosaic/grid.F90
FMS/mosaic/mosaic.F90
FMS/mosaic/mosaic2.F90
FMS/mpp/mpp.F90
FMS/mpp/mpp_data.F90
FMS/mpp/mpp_domains.F90
FMS/mpp/mpp_efp.F90
FMS/mpp/mpp.F90
FMS/mpp/mpp_io.F90
FMS/mpp/mpp_memutils.F90
FMS/mpp/mpp_parameter.F90
FMS/mpp/mpp_pset.F90
FMS/mpp/mpp_utilities.F90
FMS/oda_tools/oda_core_ecda.F90
FMS/oda_tools/oda_core.F90
FMS/oda_tools/oda_types.F90
FMS/oda_tools/write_ocean_data.F90
FMS/oda_tools/xbt_drop_rate_adjust.f90
FMS/platform/platform.F90
FMS/random_numbers/MersenneTwister.F90
FMS/random_numbers/random_numbers.F90
FMS/sat_vapor_pres/sat_vapor_pres.F90
FMS/sat_vapor_pres/sat_vapor_pres_k.F90
FMS/station_data/station_data.F90
FMS/time_interp/time_interp_external.F90
FMS/time_interp/time_interp.F90
FMS/time_interp/time_interp_external.F90
FMS/time_interp/time_interp_external2.F90
FMS/time_manager/get_cal_time.F90
FMS/time_manager/time_manager.F90
FMS/topography/gaussian_topog.F90
FMS/topography/topography.F90
FMS/tracer_manager/tracer_manager.F90
FMS/tridiagonal/tridiagonal.F90
FMS/memutils/memuse.c

FMS/mosaic/create_xgrid.c
FMS/mosaic/gradient_c2l.c
FMS/mosaic/interp.c
FMS/mosaic/mosaic_util.c
FMS/mosaic/read_mosaic.c
FMS/affinity/affinity.c
FMS/mpp/mpp_memuse.c
FMS/mpp/nsclock.c
FMS/mpp/threadloc.c
)
# stupid cmake can not figure out dependency of fft.F90 on fft99.F90 because 'use fft99_mod' is inside ifdefs
set_property(SOURCE FMS/fft/fft.F90 APPEND_STRING PROPERTY COMPILE_FLAGS "-DSGICRAY=0 -DNAGFFT=0")

target_include_directories(fms PUBLIC ${PROJECT_SOURCE_DIR}/FMS/include FMS/include FMS/fms FMS/mpp/include)
target_include_directories(fms PUBLIC ${PROJECT_SOURCE_DIR}/FMS/include FMS/include FMS/fms FMS/fms2_io/include FMS/mpp/include)
target_include_directories(fms PRIVATE ${NETCDF_INC_DIR})

set_target_properties(fms PROPERTIES ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/FMS)
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2 changes: 1 addition & 1 deletion FMS
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Submodule FMS updated 292 files
2 changes: 1 addition & 1 deletion FV3
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Submodule FV3 updated 10 files
+1 −1 CMakeLists.txt
+1 −1 atmos_cubed_sphere
+5 −5 atmos_model.F90
+1 −1 ccpp/physics
+2 −2 gfsphysics/GFS_layer/GFS_physics_driver.F90
+1 −1 gfsphysics/physics/radsw_datatb.f
+2 −4 gfsphysics/physics/samfdeepcnv.f
+35 −8 gfsphysics/physics/satmedmfvdifq.f
+9 −19 gfsphysics/physics/sfc_diff.f
+2 −0 io/FV3GFS_io.F90
7 changes: 7 additions & 0 deletions cmake/GNU.cmake
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Expand Up @@ -61,3 +61,10 @@ if(INLINE_POST)
else()
message("INLINE_POST is disabled")
endif()

if(QUAD_PRECISION)
message("QUAD_PRECISION is ENABLED")
add_definitions(-DENABLE_QUAD_PRECISION)
else()
message("QUAD_PRECISION is disabled")
endif()
9 changes: 9 additions & 0 deletions cmake/Intel.cmake
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Expand Up @@ -50,6 +50,10 @@ if(OPENMP)
add_definitions(-DOPENMP)
endif()

if(QUAD_PRECISION)
add_definitions(-DENABLE_QUAD_PRECISION)
endif()


set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -D__IFC -sox -fp-model source")

Expand Down Expand Up @@ -90,3 +94,8 @@ if(INLINE_POST)
else()
message("INLINE_POST is disabled")
endif()
if(QUAD_PRECISION)
message("QUAD_PRECISION is ENABLED")
else()
message("QUAD_PRECISION is disabled")
endif()
7 changes: 7 additions & 0 deletions cmake/PGI.cmake
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Expand Up @@ -60,3 +60,10 @@ if(INLINE_POST)
else()
message("INLINE_POST is disabled")
endif()

if(QUAD_PRECISION)
message("QUAD_PRECISION is ENABLED")
add_definitions(-DENABLE_QUAD_PRECISION)
else()
message("QUAD_PRECISION is disabled")
endif()
1 change: 1 addition & 0 deletions cmake/configure_cheyenne.gnu.cmake
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Expand Up @@ -16,6 +16,7 @@ option(VERBOSE "Enable VERBOSE mode" OFF)
option(32BIT "Enable 32BIT (single precision arithmetic in dycore)" OFF)
option(OPENMP "Enable OpenMP threading" ON)
option(AVX2 "Enable AVX2 instruction set" OFF)
option(QUAD_PRECISION "Enable QUAD_PRECISION (for certain grid metric terms in dycore)" ON)

option(INLINE_POST "Enable inline post" OFF)

Expand Down
1 change: 1 addition & 0 deletions cmake/configure_cheyenne.intel-impi.cmake
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Expand Up @@ -16,6 +16,7 @@ option(VERBOSE "Enable VERBOSE mode" OFF)
option(32BIT "Enable 32BIT (single precision arithmetic in dycore)" OFF)
option(OPENMP "Enable OpenMP threading" ON)
option(AVX2 "Enable AVX2 instruction set" ON)
option(QUAD_PRECISION "Enable QUAD_PRECISION (for certain grid metric terms in dycore)" ON)

option(INLINE_POST "Enable inline post" OFF)

Expand Down
1 change: 1 addition & 0 deletions cmake/configure_cheyenne.intel.cmake
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Expand Up @@ -16,6 +16,7 @@ option(VERBOSE "Enable VERBOSE mode" OFF)
option(32BIT "Enable 32BIT (single precision arithmetic in dycore)" OFF)
option(OPENMP "Enable OpenMP threading" ON)
option(AVX2 "Enable AVX2 instruction set" ON)
option(QUAD_PRECISION "Enable QUAD_PRECISION (for certain grid metric terms in dycore)" ON)

option(INLINE_POST "Enable inline post" OFF)

Expand Down
1 change: 1 addition & 0 deletions cmake/configure_gaea.cmake
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Original file line number Diff line number Diff line change
Expand Up @@ -16,6 +16,7 @@ option(VERBOSE "Enable VERBOSE mode" OFF)
option(32BIT "Enable 32BIT (single precision arithmetic in dycore)" OFF)
option(OPENMP "Enable OpenMP threading" ON)
option(AVX2 "Enable AVX2 instruction set" ON)
option(QUAD_PRECISION "Enable QUAD_PRECISION (for certain grid metric terms in dycore)" ON)

option(INLINE_POST "Enable inline post" OFF)

Expand Down
1 change: 1 addition & 0 deletions cmake/configure_hera.gnu.cmake
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Expand Up @@ -16,6 +16,7 @@ option(VERBOSE "Enable VERBOSE mode" OFF)
option(32BIT "Enable 32BIT (single precision arithmetic in dycore)" OFF)
option(OPENMP "Enable OpenMP threading" ON)
option(AVX2 "Enable AVX2 instruction set" OFF)
option(QUAD_PRECISION "Enable QUAD_PRECISION (for certain grid metric terms in dycore)" ON)

option(INLINE_POST "Enable inline post" OFF)

Expand Down
1 change: 1 addition & 0 deletions cmake/configure_hera.intel.cmake
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Expand Up @@ -16,6 +16,7 @@ option(VERBOSE "Enable VERBOSE mode" OFF)
option(32BIT "Enable 32BIT (single precision arithmetic in dycore)" OFF)
option(OPENMP "Enable OpenMP threading" ON)
option(AVX2 "Enable AVX2 instruction set" ON)
option(QUAD_PRECISION "Enable QUAD_PRECISION (for certain grid metric terms in dycore)" ON)

option(INLINE_POST "Enable inline post" ON)

Expand Down
1 change: 1 addition & 0 deletions cmake/configure_jet.intel.cmake
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Expand Up @@ -16,6 +16,7 @@ option(VERBOSE "Enable VERBOSE mode" OFF)
option(32BIT "Enable 32BIT (single precision arithmetic in dycore)" OFF)
option(OPENMP "Enable OpenMP threading" ON)
option(AVX2 "Enable AVX2 instruction set" OFF)
option(QUAD_PRECISION "Enable QUAD_PRECISION (for certain grid metric terms in dycore)" ON)

option(INLINE_POST "Enable inline post" OFF)

Expand Down
1 change: 1 addition & 0 deletions cmake/configure_linux.gnu.cmake
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Expand Up @@ -16,6 +16,7 @@ option(VERBOSE "Enable VERBOSE mode" OFF)
option(32BIT "Enable 32BIT (single precision arithmetic in dycore)" OFF)
option(OPENMP "Enable OpenMP threading" ON)
option(AVX2 "Enable AVX2 instruction set" OFF)
option(QUAD_PRECISION "Enable QUAD_PRECISION (for certain grid metric terms in dycore)" ON)

option(INLINE_POST "Enable inline post" OFF)

Expand Down
1 change: 1 addition & 0 deletions cmake/configure_linux.intel.cmake
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Expand Up @@ -16,6 +16,7 @@ option(VERBOSE "Enable VERBOSE mode" OFF)
option(32BIT "Enable 32BIT (single precision arithmetic in dycore)" OFF)
option(OPENMP "Enable OpenMP threading" ON)
option(AVX2 "Enable AVX2 instruction set" OFF)
option(QUAD_PRECISION "Enable QUAD_PRECISION (for certain grid metric terms in dycore)" ON)

option(INLINE_POST "Enable inline post" OFF)

Expand Down
1 change: 1 addition & 0 deletions cmake/configure_macosx.gnu.cmake
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Expand Up @@ -21,6 +21,7 @@ else()
option(OPENMP "Enable OpenMP threading" ON)
endif()
option(AVX2 "Enable AVX2 instruction set" OFF)
option(QUAD_PRECISION "Enable QUAD_PRECISION (for certain grid metric terms in dycore)" ON)

option(INLINE_POST "Enable inline post" OFF)

Expand Down
1 change: 1 addition & 0 deletions cmake/configure_orion.intel.cmake
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Expand Up @@ -16,6 +16,7 @@ option(VERBOSE "Enable VERBOSE mode" OFF)
option(32BIT "Enable 32BIT (single precision arithmetic in dycore)" OFF)
option(OPENMP "Enable OpenMP threading" ON)
option(AVX2 "Enable AVX2 instruction set" ON)
option(QUAD_PRECISION "Enable QUAD_PRECISION (for certain grid metric terms in dycore)" ON)

option(INLINE_POST "Enable inline post" ON)

Expand Down
1 change: 1 addition & 0 deletions cmake/configure_wcoss_cray.cmake
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Expand Up @@ -16,6 +16,7 @@ option(VERBOSE "Enable VERBOSE mode" OFF)
option(32BIT "Enable 32BIT (single precision arithmetic in dycore)" OFF)
option(OPENMP "Enable OpenMP threading" ON)
option(AVX2 "Enable AVX2 instruction set" ON)
option(QUAD_PRECISION "Enable QUAD_PRECISION (for certain grid metric terms in dycore)" ON)

option(INLINE_POST "Enable inline post" ON)

Expand Down
1 change: 1 addition & 0 deletions cmake/configure_wcoss_dell_p3.cmake
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Expand Up @@ -16,6 +16,7 @@ option(VERBOSE "Enable VERBOSE mode" OFF)
option(32BIT "Enable 32BIT (single precision arithmetic in dycore)" OFF)
option(OPENMP "Enable OpenMP threading" ON)
option(AVX2 "Enable AVX2 instruction set" OFF)
option(QUAD_PRECISION "Enable QUAD_PRECISION (for certain grid metric terms in dycore)" ON)

option(INLINE_POST "Enable inline post" ON)

Expand Down
5 changes: 5 additions & 0 deletions conf/configure.fv3.cheyenne.gnu
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Expand Up @@ -56,6 +56,7 @@ AVX2 = Y
HYDRO = N
CCPP = N
SION = N
QUAD_PRECISION = Y

include $(ESMFMKFILE)
ESMF_INC = $(ESMF_F90COMPILEPATHS)
Expand Down Expand Up @@ -118,6 +119,10 @@ ifeq ($(MULTI_GASES),Y)
CPPDEFS += -DMULTI_GASES
endif

ifeq ($(QUAD_PRECISION),Y)
CPPDEFS += -DENABLE_QUAD_PRECISION
endif

FFLAGS_OPT = -O2 -fno-range-check
FFLAGS_REPRO = -O2 -g -fbacktrace -fno-range-check
FFLAGS_DEBUG = -g -O0 -fno-unsafe-math-optimizations -frounding-math -fsignaling-nans -ffpe-trap=invalid,zero,overflow -fbounds-check -fbacktrace -fno-range-check -Wall
Expand Down
5 changes: 5 additions & 0 deletions conf/configure.fv3.cheyenne.intel
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Expand Up @@ -56,6 +56,7 @@ AVX2 = Y
HYDRO = N
CCPP = N
SION = N
QUAD_PRECISION = Y

include $(ESMFMKFILE)
ESMF_INC = $(ESMF_F90COMPILEPATHS)
Expand Down Expand Up @@ -127,6 +128,10 @@ ifeq ($(MULTI_GASES),Y)
CPPDEFS += -DMULTI_GASES
endif

ifeq ($(QUAD_PRECISION),Y)
CPPDEFS += -DENABLE_QUAD_PRECISION
endif

FFLAGS_OPT = -O2 -debug minimal -fp-model source -qoverride-limits -qopt-prefetch=3
FFLAGS_REPRO = -O2 -debug minimal -fp-model consistent -qoverride-limits -g -traceback
FFLAGS_DEBUG = -g -O0 -check all -check noarg_temp_created -check nopointer -warn -warn noerrors -fp-stack-check -fstack-protector-all -fpe0 -debug -traceback -ftrapuv
Expand Down
5 changes: 5 additions & 0 deletions conf/configure.fv3.cheyenne.intel-impi
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Expand Up @@ -52,6 +52,7 @@ AVX2 = Y
HYDRO = N
CCPP = N
SION = N
QUAD_PRECISION = Y

include $(ESMFMKFILE)
ESMF_INC = $(ESMF_F90COMPILEPATHS)
Expand Down Expand Up @@ -123,6 +124,10 @@ ifeq ($(MULTI_GASES),Y)
CPPDEFS += -DMULTI_GASES
endif

ifeq ($(QUAD_PRECISION),Y)
CPPDEFS += -DENABLE_QUAD_PRECISION
endif

FFLAGS_OPT = -O2 -debug minimal -fp-model source -qoverride-limits -qopt-prefetch=3
FFLAGS_REPRO = -O2 -debug minimal -fp-model consistent -qoverride-limits -g -traceback
FFLAGS_DEBUG = -g -O0 -check all -check noarg_temp_created -check nopointer -warn -warn noerrors -fp-stack-check -fstack-protector-all -fpe0 -debug -traceback -ftrapuv
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5 changes: 5 additions & 0 deletions conf/configure.fv3.endeavor.intel
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Expand Up @@ -52,6 +52,7 @@ AVX2 = Y
HYDRO = N
CCPP = N
SION = N
QUAD_PRECISION = Y

include $(ESMFMKFILE)
ESMF_INC = $(ESMF_F90COMPILEPATHS)
Expand Down Expand Up @@ -123,6 +124,10 @@ ifeq ($(MULTI_GASES),Y)
CPPDEFS += -DMULTI_GASES
endif

ifeq ($(QUAD_PRECISION),Y)
CPPDEFS += -DENABLE_QUAD_PRECISION
endif

FFLAGS_OPT = -O2 -debug minimal -fp-model source -qoverride-limits -qopt-prefetch=3
FFLAGS_REPRO = -O2 -debug minimal -fp-model consistent -qoverride-limits -g -traceback
FFLAGS_DEBUG = -g -O0 -check all -check noarg_temp_created -check nopointer -warn -warn noerrors -fp-stack-check -fstack-protector-all -fpe0 -debug -traceback -ftrapuv
Expand Down
5 changes: 5 additions & 0 deletions conf/configure.fv3.gaea.intel
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Expand Up @@ -31,6 +31,7 @@ OPENMP = Y
AVX2 = Y
HYDRO = N
CCPP = N
QUAD_PRECISION = Y

include $(ESMFMKFILE)
ESMF_INC = $(ESMF_F90COMPILEPATHS)
Expand Down Expand Up @@ -96,6 +97,10 @@ ifeq ($(MULTI_GASES),Y)
CPPDEFS += -DMULTI_GASES
endif

ifeq ($(QUAD_PRECISION),Y)
CPPDEFS += -DENABLE_QUAD_PRECISION
endif

FFLAGS_OPT = -O2 -debug minimal -fp-model source -qoverride-limits -qopt-prefetch=3
FFLAGS_REPRO = -O2 -debug minimal -fp-model consistent -qoverride-limits -g -traceback
FFLAGS_DEBUG = -g -O0 -check all -check noarg_temp_created -check nopointer -warn -warn noerrors -fp-stack-check -fstack-protector-all -fpe0 -debug -traceback -ftrapuv
Expand Down
5 changes: 5 additions & 0 deletions conf/configure.fv3.hera.gnu
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Expand Up @@ -31,6 +31,7 @@ OPENMP = Y
AVX2 = Y
HYDRO = N
CCPP = N
QUAD_PRECISION = Y

include $(ESMFMKFILE)
ESMF_INC = $(ESMF_F90COMPILEPATHS)
Expand Down Expand Up @@ -93,6 +94,10 @@ ifeq ($(MULTI_GASES),Y)
CPPDEFS += -DMULTI_GASES
endif

ifeq ($(QUAD_PRECISION),Y)
CPPDEFS += -DENABLE_QUAD_PRECISION
endif

FFLAGS_OPT = -O2 -fno-range-check
FFLAGS_REPRO = -O2 -g -fbacktrace -fno-range-check
FFLAGS_DEBUG = -g -O0 -fno-unsafe-math-optimizations -frounding-math -fsignaling-nans -ffpe-trap=invalid,zero,overflow -fbounds-check -fbacktrace -fno-range-check -Wall
Expand Down
6 changes: 6 additions & 0 deletions conf/configure.fv3.hera.intel
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Expand Up @@ -31,6 +31,7 @@ OPENMP = Y
AVX2 = Y
HYDRO = N
CCPP = N
QUAD_PRECISION = Y

include $(ESMFMKFILE)
ESMF_INC = $(ESMF_F90COMPILEPATHS)
Expand Down Expand Up @@ -105,6 +106,11 @@ ifeq ($(MULTI_GASES),Y)
CPPDEFS += -DMULTI_GASES
endif

ifeq ($(QUAD_PRECISION),Y)
CPPDEFS += -DENABLE_QUAD_PRECISION
endif


FFLAGS_OPT = -O2 -debug minimal -fp-model source -qoverride-limits -qopt-prefetch=3
FFLAGS_REPRO = -O2 -debug minimal -fp-model consistent -qoverride-limits -g -traceback
FFLAGS_DEBUG = -g -O0 -check all -check noarg_temp_created -check nopointer -warn -warn noerrors -fp-stack-check -fstack-protector-all -fpe0 -debug -traceback -ftrapuv
Expand Down
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