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feature/transition-to-capgen-1: update SDF syntax and XML schema, remove DDT dependency in radiation physics, correct units #64

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merged 18 commits into from
Oct 7, 2020
Merged

feature/transition-to-capgen-1: update SDF syntax and XML schema, remove DDT dependency in radiation physics, correct units #64

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b6a244c
change mod_name of nonphys tendencies in GFS_diagnostics.F90 to gfs_d…
grantfirl Aug 13, 2020
5aaf568
Merge branch 'develop' into fix_nophys_tendencies_output
grantfirl Aug 14, 2020
dc13776
add new variables and metadata to GFS_typedefs.[F90,meta] to support …
grantfirl Aug 27, 2020
6171c28
Merge branch 'develop' into GFS_DDT_removal_from_CCPP_physics_support
grantfirl Aug 31, 2020
3465bba
Merge branch 'develop' into GFS_DDT_removal_from_CCPP_physics_support
grantfirl Sep 3, 2020
65800dc
add active attribute to slices of du3dt, dv3dt, dt3dt, and dq3dt that…
grantfirl Sep 3, 2020
438b6ff
Merge branch 'develop' into fix_nophys_tendencies_output
grantfirl Sep 3, 2020
b1ca551
Merge branch 'fix_nophys_tendencies_output' into GFS_DDT_removal_from…
grantfirl Sep 3, 2020
50a1edc
initialize correct_unit branch
mzhangw Sep 10, 2020
f18c9c7
fix blank unit and redundant variables
mzhangw Sep 14, 2020
6fc5400
unit fix
mzhangw Sep 16, 2020
730895f
revert some changes per Doms request
mzhangw Oct 1, 2020
16bae0a
Update/simplify XML schema, replace lib="ccppphys" ver="N" with versi…
climbfuji Oct 5, 2020
58e698c
Merge branch 'GFS_DDT_removal_from_CCPP_physics_support' of https://g…
climbfuji Oct 6, 2020
126ff0c
Update .gitmodules and submodule pointer for ccpp-physics for code re…
climbfuji Oct 6, 2020
e5a2dad
Merge branch 'correct_unit' of https://github.com/mzhangw/fv3atm into…
climbfuji Oct 6, 2020
4b73f1c
Update .gitmodules and submodule pointers for ccpp-framework and ccpp…
climbfuji Oct 6, 2020
48ab49f
Revert change to .gitmodules and update submodule pointers for ccpp-f…
climbfuji Oct 7, 2020
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12 changes: 8 additions & 4 deletions .gitmodules
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Expand Up @@ -4,9 +4,13 @@
branch = dev/emc
[submodule "ccpp/framework"]
path = ccpp/framework
url = https://github.com/NCAR/ccpp-framework
branch = feature/transition-to-capgen-1
#url = https://github.com/NCAR/ccpp-framework
#branch = feature/transition-to-capgen-1
url = https://github.com/climbfuji/ccpp-framework
branch = improve_log_unit_conversion
[submodule "ccpp/physics"]
path = ccpp/physics
url = https://github.com/NCAR/ccpp-physics
branch = feature/transition-to-capgen-1
#url = https://github.com/NCAR/ccpp-physics
#branch = feature/transition-to-capgen-1
url = https://github.com/climbfuji/ccpp-physics
branch = ddt_removal_radiation
2 changes: 1 addition & 1 deletion ccpp/framework
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Submodule framework updated 1 files
+1 −0 scripts/ccpp_prebuild.py
2 changes: 1 addition & 1 deletion ccpp/physics
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Submodule physics updated 32 files
+3 −3 physics/GFS_DCNV_generic.meta
+80 −79 physics/GFS_rrtmg_post.F90
+162 −60 physics/GFS_rrtmg_post.meta
+291 −281 physics/GFS_rrtmg_pre.F90
+808 −256 physics/GFS_rrtmg_pre.meta
+6 −6 physics/GFS_rrtmgp_gfdlmp_pre.meta
+41 −39 physics/GFS_rrtmgp_lw_post.F90
+9 −0 physics/GFS_rrtmgp_lw_post.meta
+60 −58 physics/GFS_rrtmgp_sw_post.F90
+40 −31 physics/GFS_rrtmgp_sw_post.meta
+6 −6 physics/GFS_rrtmgp_zhaocarr_pre.meta
+2 −2 physics/GFS_time_vary_pre.fv3.meta
+1 −1 physics/GFS_time_vary_pre.scm.meta
+1 −1 physics/gfdl_cloud_microphys.meta
+12 −12 physics/gscond.meta
+7 −7 physics/m_micro.meta
+2 −2 physics/module_SGSCloud_RadPre.meta
+4 −4 physics/radlw_main.meta
+4 −4 physics/radsw_main.meta
+31 −27 physics/rrtmg_lw_post.F90
+68 −32 physics/rrtmg_lw_post.meta
+14 −19 physics/rrtmg_lw_pre.F90
+77 −29 physics/rrtmg_lw_pre.meta
+60 −53 physics/rrtmg_sw_post.F90
+167 −51 physics/rrtmg_sw_post.meta
+35 −34 physics/rrtmg_sw_pre.F90
+205 −51 physics/rrtmg_sw_pre.meta
+1 −1 physics/rrtmgp_lw_aerosol_optics.meta
+4 −4 physics/rrtmgp_lw_cloud_optics.meta
+0 −6 physics/rrtmgp_lw_pre.F90
+1 −1 physics/rrtmgp_sw_aerosol_optics.meta
+4 −4 physics/rrtmgp_sw_cloud_optics.meta
29 changes: 9 additions & 20 deletions ccpp/suites/suite.xsd
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<?xml version="1.0" encoding="UTF-8" standalone="yes" ?>
<xs:schema elementFormDefault="qualified"
xmlns:xs="http://www.w3.org/2001/XMLSchema"
targetNamespace="https://dtcenter.org/gmtb/users/ccpp/2018/04/23"
xmlns:namens="https://dtcenter.org/gmtb/users/ccpp/2018/04/23">
xmlns:xs="http://www.w3.org/2001/XMLSchema">

<!-- definition of function pointer type -->
<xs:complexType name="functionPointer">
<xs:simpleContent>
<xs:extension base="xs:string">
<xs:attribute name="lib" type="xs:string" use="optional"/>
<xs:attribute name="ver" type="xs:string" use="optional"/>
</xs:extension>
</xs:simpleContent>
</xs:complexType>

<!-- definition of complex elements -->
<!-- definition of complex element subcycle -->
<xs:element name="subcycle">
<xs:complexType>
<xs:sequence>
<xs:element name="scheme" type="functionPointer" minOccurs="1" maxOccurs="unbounded"/>
<xs:element name="scheme" type="xs:string" minOccurs="1" maxOccurs="unbounded"/>
</xs:sequence>
<xs:attribute name="loop" type="xs:positiveInteger" use="optional"/>
</xs:complexType>
</xs:element>

<!-- definition of complex element group -->
<xs:element name="group">
<xs:complexType>
<xs:choice>
<xs:element ref="subcycle" minOccurs="1" maxOccurs="unbounded"/>
</xs:choice>
<xs:attribute name="part" type="xs:positiveInteger" use="optional"/>
<xs:attribute name="name" type="xs:string"/>
</xs:complexType>
</xs:element>

<!-- definition of complex element suite -->
<xs:element name="suite">
<xs:complexType>
<xs:sequence>
<xs:element name="init" type="functionPointer" minOccurs="0" maxOccurs="1"/>
<xs:element name="init" type="xs:string" minOccurs="0" maxOccurs="1"/>
<xs:element ref="group" minOccurs="1" maxOccurs="unbounded"/>
<xs:element name="finalize" type="functionPointer" minOccurs="0" maxOccurs="1"/>
<xs:element name="finalize" type="xs:string" minOccurs="0" maxOccurs="1"/>
</xs:sequence>
<xs:attribute name="name" type="xs:string"/>
<xs:attribute name="lib" type="xs:string" use="optional"/>
<xs:attribute name="ver" type="xs:string" use="optional"/>
<xs:attribute name="version" type="xs:positiveInteger" use="optional"/>
</xs:complexType>
</xs:element>

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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_CPT_v0.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_CPT_v0" lib="ccppphys" ver="4">
<suite name="FV3_CPT_v0" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_coupled.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_coupled" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_coupled" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_couplednsst.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_couplednsst" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_couplednsst" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_csawmg.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_csawmg" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_csawmg" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_csawmgshoc.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_csawmgshoc" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_csawmgshoc" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_fv3wam.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_fv3wam" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_fv3wam" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_gfdlmp.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_gfdlmp" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_gfdlmp" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_gfdlmp_noahmp.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_gfdlmp_noahmp" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_gfdlmp_noahmp" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_gfdlmp_regional.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_gfdlmp_regional" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_gfdlmp_regional" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_gfdlmp_regional_c768.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_gfdlmp_regional_c768" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_gfdlmp_regional_c768" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_h2ophys.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_h2ophys" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_h2ophys" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_myj.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_myj" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_myj" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_ntiedtke.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_ntiedtke" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_ntiedtke" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_ozphys_2015.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_ozphys_2015" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_ozphys_2015" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_sas.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_sas" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_sas" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_satmedmf.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_satmedmf" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_satmedmf" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_satmedmf_coupled.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_satmedmf_coupled" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_satmedmf_coupled" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_satmedmfq.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_satmedmfq" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_satmedmfq" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_shinhong.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_shinhong" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_shinhong" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_stretched.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_stretched" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_stretched" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_2017_ysu.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_2017_ysu" lib="ccppphys" ver="4">
<suite name="FV3_GFS_2017_ysu" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_cpld_rasmgshoc.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_cpld_rasmgshoc" lib="ccppphys" ver="4">
<suite name="FV3_GFS_cpld_rasmgshoc" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_cpld_rasmgshocnsst.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_cpld_rasmgshocnsst" lib="ccppphys" ver="4">
<suite name="FV3_GFS_cpld_rasmgshocnsst" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_cpldnst_rasmgshoc.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_cpldnst_rasmgshoc" lib="ccppphys" ver="4">
<suite name="FV3_GFS_cpldnst_rasmgshoc" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_rasmgshoc.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_rasmgshoc" lib="ccppphys" ver="4">
<suite name="FV3_GFS_rasmgshoc" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_v15.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_v15" lib="ccppphys" ver="4">
<suite name="FV3_GFS_v15" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_v15_gf.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_v15_gf" lib="ccppphys" ver="4">
<suite name="FV3_GFS_v15_gf" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_v15_gf_thompson.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_v15_gf_thompson" lib="ccppphys" ver="4">
<suite name="FV3_GFS_v15_gf_thompson" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_v15_mynn.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_v15_mynn" lib="ccppphys" ver="4">
<suite name="FV3_GFS_v15_mynn" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_v15_ras.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_v15_ras" lib="ccppphys" ver="4">
<suite name="FV3_GFS_v15_ras" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_v15_rasmgshoc.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_v15_rasmgshoc" lib="ccppphys" ver="4">
<suite name="FV3_GFS_v15_rasmgshoc" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_v15_thompson.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_v15_thompson" lib="ccppphys" ver="4">
<suite name="FV3_GFS_v15_thompson" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_v15_thompson_mynn.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_v15_thompson_mynn" lib="ccppphys" ver="4">
<suite name="FV3_GFS_v15_thompson_mynn" version="1">
<!-- <init></init> -->
<group name="time_vary">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_v15p2.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_v15p2" lib="ccppphys" ver="4">
<suite name="FV3_GFS_v15p2" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_v15p2_RRTMGP.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_v15p2_RRTMGP" lib="ccppphys" ver="4">
<suite name="FV3_GFS_v15p2_RRTMGP" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_v15p2_coupled.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_v15p2_coupled" lib="ccppphys" ver="4">
<suite name="FV3_GFS_v15p2_coupled" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_v15p2_no_nsst.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_v15p2_no_nsst" lib="ccppphys" ver="4">
<suite name="FV3_GFS_v15p2_no_nsst" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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2 changes: 1 addition & 1 deletion ccpp/suites/suite_FV3_GFS_v15plus.xml
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<?xml version="1.0" encoding="UTF-8"?>

<suite name="FV3_GFS_v15plus" lib="ccppphys" ver="4">
<suite name="FV3_GFS_v15plus" version="1">
<!-- <init></init> -->
<group name="fast_physics">
<subcycle loop="1">
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