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index.html
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<!DOCTYPE html>
<html class="writer-html5" lang="en" >
<head>
<meta charset="utf-8" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Welcome to SERD’s documentation! — SERD 0.1.2 documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
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<link rel="next" title="Requirements" href="_installation/index.html" />
</head>
<body class="wy-body-for-nav">
<div class="wy-grid-for-nav">
<nav data-toggle="wy-nav-shift" class="wy-nav-side">
<div class="wy-side-scroll">
<div class="wy-side-nav-search" >
<a href="#" class="icon icon-home"> SERD
</a>
<div class="version">
0.1
</div>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
<input type="text" name="q" placeholder="Search docs" />
<input type="hidden" name="check_keywords" value="yes" />
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<p class="caption" role="heading"><span class="caption-text">Installation</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="_installation/index.html">Requirements</a></li>
<li class="toctree-l1"><a class="reference internal" href="_installation/index.html#installation">Installation</a></li>
</ul>
<p class="caption" role="heading"><span class="caption-text">Tutorial</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="_tutorial/index.html">Full workflow</a></li>
<li class="toctree-l1"><a class="reference internal" href="_tutorial/index.html#stepwise-workflow">Stepwise workflow</a></li>
</ul>
<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html">SERD.detect</a></li>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html#serd-g2pdb">SERD.g2pdb</a></li>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html#serd-get-vertices">SERD.get_vertices</a></li>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html#serd-interface">SERD.interface</a></li>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html#serd-r2g">SERD.r2g</a></li>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html#serd-read-vdw">SERD.read_vdw</a></li>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html#serd-read-pdb">SERD.read_pdb</a></li>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html#serd-save">SERD.save</a></li>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html#serd-save-session">SERD.save_session</a></li>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html#serd-surface">SERD.surface</a></li>
</ul>
<p class="caption" role="heading"><span class="caption-text">About</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="_about/index.html">Issues</a></li>
<li class="toctree-l1"><a class="reference internal" href="_about/index.html#scientific-team">Scientific team</a></li>
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<section id="welcome-to-serd-s-documentation">
<h1>Welcome to SERD’s documentation!<a class="headerlink" href="#welcome-to-serd-s-documentation" title="Permalink to this heading"></a></h1>
<p>Welcome to the <strong>Solvent-Exposed Residues Detection (SERD)</strong>, this page was built to help you get started with our package.</p>
<div class="toctree-wrapper compound">
<p class="caption" role="heading"><span class="caption-text">Installation</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="_installation/index.html">Requirements</a><ul>
<li class="toctree-l2"><a class="reference internal" href="_installation/index.html#package-managers">Package managers</a></li>
<li class="toctree-l2"><a class="reference internal" href="_installation/index.html#conda">Conda</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="_installation/index.html#installation">Installation</a></li>
</ul>
</div>
<div class="toctree-wrapper compound">
<p class="caption" role="heading"><span class="caption-text">Tutorial</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="_tutorial/index.html">Full workflow</a></li>
<li class="toctree-l1"><a class="reference internal" href="_tutorial/index.html#stepwise-workflow">Stepwise workflow</a></li>
</ul>
</div>
<div class="toctree-wrapper compound">
<p class="caption" role="heading"><span class="caption-text">API Reference</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html">SERD.detect</a></li>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html#serd-g2pdb">SERD.g2pdb</a></li>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html#serd-get-vertices">SERD.get_vertices</a></li>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html#serd-interface">SERD.interface</a></li>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html#serd-r2g">SERD.r2g</a></li>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html#serd-read-vdw">SERD.read_vdw</a></li>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html#serd-read-pdb">SERD.read_pdb</a></li>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html#serd-save">SERD.save</a></li>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html#serd-save-session">SERD.save_session</a></li>
<li class="toctree-l1"><a class="reference internal" href="_api_reference/index.html#serd-surface">SERD.surface</a></li>
</ul>
</div>
<div class="toctree-wrapper compound">
<p class="caption" role="heading"><span class="caption-text">About</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="_about/index.html">Issues</a><ul>
<li class="toctree-l2"><a class="reference external" href="https://github.com/jvsguerra/SERD/issues/new?assignees=&labels=&template=bug_report.md&title=">Bug Report</a></li>
<li class="toctree-l2"><a class="reference external" href="https://github.com/jvsguerra/SERD/issues/new?assignees=&labels=&template=feature_request.md&title=">Request for a new feature</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="_about/index.html#scientific-team">Scientific team</a></li>
<li class="toctree-l1"><a class="reference internal" href="_about/index.html#license">License</a></li>
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