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JackDunnNZsimonbyrne
JackDunnNZ
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simonbyrne
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Add BinaryBuilder binaries with fallback to existing source build (#33)
Updates Travis and Appveyor scripts
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+162
-13
lines changed

6 files changed

+162
-13
lines changed

‎.travis.yml

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@@ -1,10 +1,7 @@
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language: julia
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os:
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- linux
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addons:
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apt:
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packages:
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- gfortran
4+
- osx
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julia:
96
- 0.7
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- 1.0

‎REQUIRE

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@@ -1,3 +1,4 @@
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julia 0.7
22
Distributions
33
StatsBase
4+
BinaryProvider 0.3

‎appveyor.yml

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@@ -0,0 +1,43 @@
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environment:
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matrix:
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- julia_version: 0.7
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- julia_version: 1
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- julia_version: nightly
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platform:
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- x86 # 32-bit
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- x64 # 64-bit
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# # Uncomment the following lines to allow failures on nightly julia
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# # (tests will run but not make your overall status red)
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# matrix:
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# allow_failures:
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# - julia_version: nightly
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branches:
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only:
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- master
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- /release-.*/
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notifications:
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- provider: Email
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on_build_success: false
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on_build_failure: false
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on_build_status_changed: false
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install:
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- ps: iex ((new-object net.webclient).DownloadString("https://raw.githubusercontent.com/JuliaCI/Appveyor.jl/version-1/bin/install.ps1"))
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build_script:
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- echo "%JL_BUILD_SCRIPT%"
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- C:\julia\bin\julia -e "%JL_BUILD_SCRIPT%"
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test_script:
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- echo "%JL_TEST_SCRIPT%"
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- C:\julia\bin\julia -e "%JL_TEST_SCRIPT%"
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# # Uncomment to support code coverage upload. Should only be enabled for packages
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# # which would have coverage gaps without running on Windows
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# on_success:
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# - echo "%JL_CODECOV_SCRIPT%"
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# - C:\julia\bin\julia -e "%JL_CODECOV_SCRIPT%"

‎deps/.gitignore

+3-1
Original file line numberDiff line numberDiff line change
@@ -1 +1,3 @@
1-
libglmnet.*
1+
libglmnet.*
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usr/
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deps.jl

‎deps/build.jl

+103-7
Original file line numberDiff line numberDiff line change
@@ -1,10 +1,106 @@
1-
using Compat
2-
using Libdl
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using BinaryProvider # requires BinaryProvider 0.3.0 or later
2+
using Libdl
33

4-
if Compat.Sys.iswindows()
5-
flags = ["-m$(Sys.WORD_SIZE)","-fdefault-real-8","-ffixed-form","-shared","-O3"]
4+
# Parse some basic command-line arguments
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const verbose = "--verbose" in ARGS
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const prefix = Prefix(get([a for a in ARGS if a != "--verbose"], 1, joinpath(@__DIR__, "usr")))
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products = [
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LibraryProduct(prefix, ["libglmnet"], :libglmnet),
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]
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# Download binaries from hosted location
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bin_prefix = "https://github.com/JackDunnNZ/GLMNetBuilder/releases/download/v5-2"
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# Listing of files generated by BinaryBuilder:
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download_info = Dict(
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Linux(:aarch64, libc=:glibc, compiler_abi=CompilerABI(:gcc4)) => ("$bin_prefix/GLMNet.v5.0.0.aarch64-linux-gnu-gcc4.tar.gz", "2d2806621bfe1e8cfedf33b061e5a1bfe89a5bc8e8f272179b36b3e5e1ad3428"),
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Linux(:aarch64, libc=:glibc, compiler_abi=CompilerABI(:gcc7)) => ("$bin_prefix/GLMNet.v5.0.0.aarch64-linux-gnu-gcc7.tar.gz", "ea0172b95b52a0b4285c8851d3c9de37c972aad6132ff395447d8dc50ea8542b"),
18+
Linux(:aarch64, libc=:glibc, compiler_abi=CompilerABI(:gcc8)) => ("$bin_prefix/GLMNet.v5.0.0.aarch64-linux-gnu-gcc8.tar.gz", "bb4387b4de50a483a621d2fe772ae8d1362377094ba85b78839f7f385c743cdc"),
19+
Linux(:aarch64, libc=:musl, compiler_abi=CompilerABI(:gcc4)) => ("$bin_prefix/GLMNet.v5.0.0.aarch64-linux-musl-gcc4.tar.gz", "8b684072f3c4350f477bfaec305e5b3e211f2a30d60d151780333effb636da06"),
20+
Linux(:aarch64, libc=:musl, compiler_abi=CompilerABI(:gcc7)) => ("$bin_prefix/GLMNet.v5.0.0.aarch64-linux-musl-gcc7.tar.gz", "4cdc64a24e3fea0eef697aeda333a21c95d328a33cc528ddd1c31014a09eb987"),
21+
Linux(:aarch64, libc=:musl, compiler_abi=CompilerABI(:gcc8)) => ("$bin_prefix/GLMNet.v5.0.0.aarch64-linux-musl-gcc8.tar.gz", "56cf7f155bd24674266b10a5ebe3a8cd8ed3648f3bd02ba663fd8119533e7fa9"),
22+
Linux(:armv7l, libc=:glibc, call_abi=:eabihf, compiler_abi=CompilerABI(:gcc4)) => ("$bin_prefix/GLMNet.v5.0.0.arm-linux-gnueabihf-gcc4.tar.gz", "009f7bfa3ebd435b1788e91d3965b8f0346076a1fbce1fc7c81a8981cd6a3c61"),
23+
Linux(:armv7l, libc=:glibc, call_abi=:eabihf, compiler_abi=CompilerABI(:gcc7)) => ("$bin_prefix/GLMNet.v5.0.0.arm-linux-gnueabihf-gcc7.tar.gz", "362a505e5b4e983453f4609f415131cd8991e6fb7dcbbf643868dda731cb7275"),
24+
Linux(:armv7l, libc=:glibc, call_abi=:eabihf, compiler_abi=CompilerABI(:gcc8)) => ("$bin_prefix/GLMNet.v5.0.0.arm-linux-gnueabihf-gcc8.tar.gz", "fde5e90b8c6b2f1abf8c6db8c554068028127c6d02393fd805d9dcc67af3681d"),
25+
Linux(:armv7l, libc=:musl, call_abi=:eabihf, compiler_abi=CompilerABI(:gcc4)) => ("$bin_prefix/GLMNet.v5.0.0.arm-linux-musleabihf-gcc4.tar.gz", "d1d05887bd93182ce0615c2ef4682b3e90d1d7b28c48486537c793d6184719cc"),
26+
Linux(:armv7l, libc=:musl, call_abi=:eabihf, compiler_abi=CompilerABI(:gcc7)) => ("$bin_prefix/GLMNet.v5.0.0.arm-linux-musleabihf-gcc7.tar.gz", "b990be3b0707821c59547be9de26b316c7ad4cd197dcb2b5fbdec382d57810e3"),
27+
Linux(:armv7l, libc=:musl, call_abi=:eabihf, compiler_abi=CompilerABI(:gcc8)) => ("$bin_prefix/GLMNet.v5.0.0.arm-linux-musleabihf-gcc8.tar.gz", "7a4e00c29fccf4355711a59d5bf280c3d81113a7ae572fb445f62908c82d275b"),
28+
Linux(:i686, libc=:glibc, compiler_abi=CompilerABI(:gcc4)) => ("$bin_prefix/GLMNet.v5.0.0.i686-linux-gnu-gcc4.tar.gz", "d84b0c966570dbb4f42090e52120cc1ede1d652a590f9488422a0de7702b2222"),
29+
Linux(:i686, libc=:glibc, compiler_abi=CompilerABI(:gcc7)) => ("$bin_prefix/GLMNet.v5.0.0.i686-linux-gnu-gcc7.tar.gz", "001c8e093539f04316477ba6a513f10e8af1d0c432ae9fe80badd040b4736108"),
30+
Linux(:i686, libc=:glibc, compiler_abi=CompilerABI(:gcc8)) => ("$bin_prefix/GLMNet.v5.0.0.i686-linux-gnu-gcc8.tar.gz", "1c58646892cb29a9631c2cb1f1e7e3e6515d26ce75ce8d4e21cc51ebf9a5b17b"),
31+
Linux(:i686, libc=:musl, compiler_abi=CompilerABI(:gcc4)) => ("$bin_prefix/GLMNet.v5.0.0.i686-linux-musl-gcc4.tar.gz", "da76045fbe3d38d379ca6383d915798de7c722f0e370fca7b539ae6f7e3de39d"),
32+
Linux(:i686, libc=:musl, compiler_abi=CompilerABI(:gcc7)) => ("$bin_prefix/GLMNet.v5.0.0.i686-linux-musl-gcc7.tar.gz", "826f1e3cca812a9bfb95c8e3a58797e69e6483f9a254ca7b5e386ca343cbd881"),
33+
Linux(:i686, libc=:musl, compiler_abi=CompilerABI(:gcc8)) => ("$bin_prefix/GLMNet.v5.0.0.i686-linux-musl-gcc8.tar.gz", "a4c10543345b66870cd5ebc9fbf617b16388c0e88db59d05d5a208bde33d7a87"),
34+
Windows(:i686, compiler_abi=CompilerABI(:gcc4)) => ("$bin_prefix/GLMNet.v5.0.0.i686-w64-mingw32-gcc4.tar.gz", "0d65da43813af68ce685df0826a88d518cc6f619e5c3fdb6b1d71996bf8b35b5"),
35+
Windows(:i686, compiler_abi=CompilerABI(:gcc7)) => ("$bin_prefix/GLMNet.v5.0.0.i686-w64-mingw32-gcc7.tar.gz", "f4a02ed99d53df193779ed7d10c087c47cf440f0f9ff1f9b93b6564a03ca74b2"),
36+
Windows(:i686, compiler_abi=CompilerABI(:gcc8)) => ("$bin_prefix/GLMNet.v5.0.0.i686-w64-mingw32-gcc8.tar.gz", "f748f5fc3b2e9e46761ef70ff47e527925af91369b4ebcbd37253bcf575c13dc"),
37+
Linux(:powerpc64le, libc=:glibc, compiler_abi=CompilerABI(:gcc4)) => ("$bin_prefix/GLMNet.v5.0.0.powerpc64le-linux-gnu-gcc4.tar.gz", "0b9020dae84c899e1491f077e1823c99d03f05599810fb473fb83bf3118e0b26"),
38+
Linux(:powerpc64le, libc=:glibc, compiler_abi=CompilerABI(:gcc7)) => ("$bin_prefix/GLMNet.v5.0.0.powerpc64le-linux-gnu-gcc7.tar.gz", "05ab161682d60776aaaa9f3d2f9d060d160565da4aff62063a5d2c7ab6f93de7"),
39+
Linux(:powerpc64le, libc=:glibc, compiler_abi=CompilerABI(:gcc8)) => ("$bin_prefix/GLMNet.v5.0.0.powerpc64le-linux-gnu-gcc8.tar.gz", "2c8141ea4a95c6ad67c8eb3ed4a1c77fa50c05bc2b1ed027aa6f29dc81ed5d48"),
40+
MacOS(:x86_64, compiler_abi=CompilerABI(:gcc4)) => ("$bin_prefix/GLMNet.v5.0.0.x86_64-apple-darwin14-gcc4.tar.gz", "1679227f30ecf26ecc6a2e9b02acdfeb99444e335407cc026d002d28a9437544"),
41+
MacOS(:x86_64, compiler_abi=CompilerABI(:gcc7)) => ("$bin_prefix/GLMNet.v5.0.0.x86_64-apple-darwin14-gcc7.tar.gz", "279c5a8b8fbf0e6c1252dda05d1cdbdb6840cc0560a2107df19368b10d90a3b6"),
42+
MacOS(:x86_64, compiler_abi=CompilerABI(:gcc8)) => ("$bin_prefix/GLMNet.v5.0.0.x86_64-apple-darwin14-gcc8.tar.gz", "f25c11763c66c2b8b0b4dce828a0c48cf09a90a7e844b88a1d1bc885bdd5c6a6"),
43+
Linux(:x86_64, libc=:glibc, compiler_abi=CompilerABI(:gcc4)) => ("$bin_prefix/GLMNet.v5.0.0.x86_64-linux-gnu-gcc4.tar.gz", "01b344df4f986c3c85a65f6afe2973e8bf98b17c0417ee1f1814a3e878b403ee"),
44+
Linux(:x86_64, libc=:glibc, compiler_abi=CompilerABI(:gcc7)) => ("$bin_prefix/GLMNet.v5.0.0.x86_64-linux-gnu-gcc7.tar.gz", "ea3faa8f7fb57a44ed62da52869321e14ddda390077653c55300db6db1101df9"),
45+
Linux(:x86_64, libc=:glibc, compiler_abi=CompilerABI(:gcc8)) => ("$bin_prefix/GLMNet.v5.0.0.x86_64-linux-gnu-gcc8.tar.gz", "a9a8f2c7887706efb8f7a8f4aa28a3fb4057e23b6874db6b2b7511fbfa70ed4f"),
46+
Linux(:x86_64, libc=:musl, compiler_abi=CompilerABI(:gcc4)) => ("$bin_prefix/GLMNet.v5.0.0.x86_64-linux-musl-gcc4.tar.gz", "8f7cd82195a9e6a75ea3775cbf4dc9aeb5d3b8205fe2cb9f7651aecadc48db68"),
47+
Linux(:x86_64, libc=:musl, compiler_abi=CompilerABI(:gcc7)) => ("$bin_prefix/GLMNet.v5.0.0.x86_64-linux-musl-gcc7.tar.gz", "ac0cd26f829b144375e0e77331ebdb478e3f889515f11f0b51aad8e77e514041"),
48+
Linux(:x86_64, libc=:musl, compiler_abi=CompilerABI(:gcc8)) => ("$bin_prefix/GLMNet.v5.0.0.x86_64-linux-musl-gcc8.tar.gz", "56dddbda94b4f2c0d369e77e07d779627c4a9639f63280408283510ca0fcfb86"),
49+
FreeBSD(:x86_64, compiler_abi=CompilerABI(:gcc4)) => ("$bin_prefix/GLMNet.v5.0.0.x86_64-unknown-freebsd11.1-gcc4.tar.gz", "764a88a922a822b734c512cc98e57aa26e86a0df2eba5a821bb50cb577737a7c"),
50+
FreeBSD(:x86_64, compiler_abi=CompilerABI(:gcc7)) => ("$bin_prefix/GLMNet.v5.0.0.x86_64-unknown-freebsd11.1-gcc7.tar.gz", "8eed3fec2a44d5716ca8bc38063926e26435398bbff5f4c51366f4f0d229fb76"),
51+
FreeBSD(:x86_64, compiler_abi=CompilerABI(:gcc8)) => ("$bin_prefix/GLMNet.v5.0.0.x86_64-unknown-freebsd11.1-gcc8.tar.gz", "76beb84defdde23ca70d61903dfa340e3871aa89ed8b1e70fbba3d5c20bbe287"),
52+
Windows(:x86_64, compiler_abi=CompilerABI(:gcc4)) => ("$bin_prefix/GLMNet.v5.0.0.x86_64-w64-mingw32-gcc4.tar.gz", "08154fd8ffcb54cdf8eac064953a65a9c9ca2b8ef1fb7d2f346df3f7fcb06ab9"),
53+
Windows(:x86_64, compiler_abi=CompilerABI(:gcc7)) => ("$bin_prefix/GLMNet.v5.0.0.x86_64-w64-mingw32-gcc7.tar.gz", "2dc11f5ed659b461fd0f9744752fc68a830a307dcaab36ea9b67391b0d53a7a6"),
54+
Windows(:x86_64, compiler_abi=CompilerABI(:gcc8)) => ("$bin_prefix/GLMNet.v5.0.0.x86_64-w64-mingw32-gcc8.tar.gz", "5760d8b3a079410e245fabbe9d9affd67d353dc6870cde6457eb4bd72eae4c85"),
55+
)
56+
57+
# Install unsatisfied or updated dependencies:
58+
unsatisfied = any(!satisfied(p; verbose=verbose) for p in products)
59+
dl_info = choose_download(download_info, platform_key_abi())
60+
if dl_info === nothing && unsatisfied
61+
# If we don't have a compatible .tar.gz to download, complain.
62+
# Alternatively, you could attempt to install from a separate provider,
63+
# build from source or something even more ambitious here.
64+
@warn "GLMNetBuilder provides no prebuilt binary for your platform (\"$(Sys.MACHINE)\", parsed as \"$(triplet(platform_key_abi()))\")."
65+
66+
@info "Trying to install GLMNet from source, assuming you have gfortran available"
67+
68+
if Sys.iswindows()
69+
flags = ["-m$(Sys.WORD_SIZE)","-fdefault-real-8","-ffixed-form","-shared","-O3"]
70+
else
71+
flags = ["-m$(Sys.WORD_SIZE)","-fdefault-real-8","-ffixed-form","-shared","-O3","-fPIC"]
72+
end
73+
74+
run(`gfortran $flags glmnet5.f90 -o libglmnet.$(Libdl.dlext)`)
75+
76+
write(joinpath(@__DIR__, "deps.jl"), """
77+
if isdefined((@static VERSION < v"0.7.0-DEV.484" ? current_module() : @__MODULE__), :Compat)
78+
import Compat.Libdl
79+
elseif VERSION >= v"0.7.0-DEV.3382"
80+
import Libdl
81+
end
82+
83+
function check_deps()
84+
global libglmnet
85+
if !isfile(libglmnet)
86+
error("\$(libglmnet) does not exist, Please re-run Pkg.build(\\\"GLMNet\\\"), and restart Julia.")
87+
end
88+
89+
if Libdl.dlopen_e(libglmnet) in (C_NULL, nothing)
90+
error("\$(libglmnet) cannot be opened, Please re-run Pkg.build(\\\"GLMNet\\\"), and restart Julia.")
91+
end
92+
93+
end
94+
const libglmnet = "$(joinpath(@__DIR__, "libglmnet.$(Libdl.dlext)"))"
95+
""")
696
else
7-
flags = ["-m$(Sys.WORD_SIZE)","-fdefault-real-8","-ffixed-form","-shared","-O3","-fPIC"]
8-
end
97+
# If we have a download, and we are unsatisfied (or the version we're
98+
# trying to install is not itself installed) then load it up!
99+
if unsatisfied || !isinstalled(dl_info...; prefix=prefix)
100+
# Download and install binaries
101+
install(dl_info...; prefix=prefix, force=true, verbose=verbose)
102+
end
9103

10-
run(`gfortran $flags glmnet5.f90 -o libglmnet.$(Libdl.dlext)`)
104+
# Write out a deps.jl file that will contain mappings for our products
105+
write_deps_file(joinpath(@__DIR__, "deps.jl"), products, verbose=verbose)
106+
end

‎src/GLMNet.jl

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@@ -4,7 +4,17 @@ module GLMNet
44
using Distributions, StatsBase
55
using Distributed, Printf, Random, SparseArrays
66

7-
const libglmnet = joinpath(dirname(@__FILE__), "..", "deps", "libglmnet")
7+
8+
depsjl = joinpath(@__DIR__, "..", "deps", "deps.jl")
9+
if isfile(depsjl)
10+
include(depsjl)
11+
else
12+
error("GLMNet not properly installed. Please run Pkg.build(\"GLMNet\") and restart julia")
13+
end
14+
15+
function __init__()
16+
check_deps()
17+
end
818

919
import Base.getindex, Base.convert, Base.size, Base.show
1020
export glmnet!, glmnet, nactive, predict, glmnetcv, GLMNetPath, GLMNetCrossValidation, CompressedPredictorMatrix

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