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1.5.0-DEV-f014071421.log
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Julia Version 1.5.0-DEV.232
Commit f014071421 (2020-02-03 21:36 UTC)
Platform Info:
OS: Linux (x86_64-linux-gnu)
CPU: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
WORD_SIZE: 64
LIBM: libopenlibm
LLVM: libLLVM-9.0.1 (ORCJIT, skylake)
Environment:
JULIA_DEPOT_PATH = ::/usr/local/share/julia
JULIA_NUM_THREADS = 2
Resolving package versions...
Installed SortingAlgorithms ─────────── v0.3.1
Installed WeakRefStrings ────────────── v0.6.2
Installed Missings ──────────────────── v0.4.3
Installed TableTraits ───────────────── v1.0.0
Installed FilePathsBase ─────────────── v0.7.0
Installed DocStringExtensions ───────── v0.8.1
Installed StanOptimize ──────────────── v2.0.0
Installed Documenter ────────────────── v0.24.5
Installed StanDump ──────────────────── v0.2.0
Installed Reexport ──────────────────── v0.2.0
Installed DataValueInterfaces ───────── v1.0.0
Installed InvertedIndices ───────────── v1.0.0
Installed CategoricalArrays ─────────── v0.7.7
Installed DataAPI ───────────────────── v1.1.0
Installed JSON ──────────────────────── v0.21.0
Installed StanBase ──────────────────── v2.0.2
Installed DataStructures ────────────── v0.17.9
Installed Parsers ───────────────────── v0.3.11
Installed DataFrames ────────────────── v0.20.0
Installed OrderedCollections ────────── v1.1.0
Installed Parameters ────────────────── v0.12.0
Installed Tables ────────────────────── v0.2.11
Installed ArgCheck ──────────────────── v1.0.1
Installed PooledArrays ──────────────── v0.5.3
Installed ElasticArrays ─────────────── v1.0.0
Installed StanSamples ───────────────── v0.1.0
Installed Compat ────────────────────── v3.2.0
Installed IteratorInterfaceExtensions ─ v1.0.0
Installed CSV ───────────────────────── v0.5.23
Updating `~/.julia/environments/v1.5/Project.toml`
[fbd8da12] + StanOptimize v2.0.0
Updating `~/.julia/environments/v1.5/Manifest.toml`
[dce04be8] + ArgCheck v1.0.1
[336ed68f] + CSV v0.5.23
[324d7699] + CategoricalArrays v0.7.7
[34da2185] + Compat v3.2.0
[9a962f9c] + DataAPI v1.1.0
[a93c6f00] + DataFrames v0.20.0
[864edb3b] + DataStructures v0.17.9
[e2d170a0] + DataValueInterfaces v1.0.0
[ffbed154] + DocStringExtensions v0.8.1
[e30172f5] + Documenter v0.24.5
[fdbdab4c] + ElasticArrays v1.0.0
[48062228] + FilePathsBase v0.7.0
[41ab1584] + InvertedIndices v1.0.0
[82899510] + IteratorInterfaceExtensions v1.0.0
[682c06a0] + JSON v0.21.0
[e1d29d7a] + Missings v0.4.3
[bac558e1] + OrderedCollections v1.1.0
[d96e819e] + Parameters v0.12.0
[69de0a69] + Parsers v0.3.11
[2dfb63ee] + PooledArrays v0.5.3
[189a3867] + Reexport v0.2.0
[a2af1166] + SortingAlgorithms v0.3.1
[d0ee94f6] + StanBase v2.0.2
[9713c8f3] + StanDump v0.2.0
[fbd8da12] + StanOptimize v2.0.0
[52d0d7a9] + StanSamples v0.1.0
[3783bdb8] + TableTraits v1.0.0
[bd369af6] + Tables v0.2.11
[ea10d353] + WeakRefStrings v0.6.2
[2a0f44e3] + Base64
[ade2ca70] + Dates
[8bb1440f] + DelimitedFiles
[8ba89e20] + Distributed
[9fa8497b] + Future
[b77e0a4c] + InteractiveUtils
[76f85450] + LibGit2
[8f399da3] + Libdl
[37e2e46d] + LinearAlgebra
[56ddb016] + Logging
[d6f4376e] + Markdown
[a63ad114] + Mmap
[44cfe95a] + Pkg
[de0858da] + Printf
[3fa0cd96] + REPL
[9a3f8284] + Random
[ea8e919c] + SHA
[9e88b42a] + Serialization
[1a1011a3] + SharedArrays
[6462fe0b] + Sockets
[2f01184e] + SparseArrays
[10745b16] + Statistics
[8dfed614] + Test
[cf7118a7] + UUIDs
[4ec0a83e] + Unicode
Testing StanOptimize
Status `/tmp/jl_6UVixp/Manifest.toml`
[dce04be8] ArgCheck v1.0.1
[336ed68f] CSV v0.5.23
[324d7699] CategoricalArrays v0.7.7
[34da2185] Compat v3.2.0
[9a962f9c] DataAPI v1.1.0
[a93c6f00] DataFrames v0.20.0
[864edb3b] DataStructures v0.17.9
[e2d170a0] DataValueInterfaces v1.0.0
[ffbed154] DocStringExtensions v0.8.1
[e30172f5] Documenter v0.24.5
[fdbdab4c] ElasticArrays v1.0.0
[48062228] FilePathsBase v0.7.0
[41ab1584] InvertedIndices v1.0.0
[82899510] IteratorInterfaceExtensions v1.0.0
[682c06a0] JSON v0.21.0
[e1d29d7a] Missings v0.4.3
[bac558e1] OrderedCollections v1.1.0
[d96e819e] Parameters v0.12.0
[69de0a69] Parsers v0.3.11
[2dfb63ee] PooledArrays v0.5.3
[189a3867] Reexport v0.2.0
[a2af1166] SortingAlgorithms v0.3.1
[d0ee94f6] StanBase v2.0.2
[9713c8f3] StanDump v0.2.0
[fbd8da12] StanOptimize v2.0.0
[52d0d7a9] StanSamples v0.1.0
[3783bdb8] TableTraits v1.0.0
[bd369af6] Tables v0.2.11
[ea10d353] WeakRefStrings v0.6.2
[2a0f44e3] Base64
[ade2ca70] Dates
[8bb1440f] DelimitedFiles
[8ba89e20] Distributed
[9fa8497b] Future
[b77e0a4c] InteractiveUtils
[76f85450] LibGit2
[8f399da3] Libdl
[37e2e46d] LinearAlgebra
[56ddb016] Logging
[d6f4376e] Markdown
[a63ad114] Mmap
[44cfe95a] Pkg
[de0858da] Printf
[3fa0cd96] REPL
[9a3f8284] Random
[ea8e919c] SHA
[9e88b42a] Serialization
[1a1011a3] SharedArrays
[6462fe0b] Sockets
[2f01184e] SparseArrays
[10745b16] Statistics
[8dfed614] Test
[cf7118a7] UUIDs
[4ec0a83e] Unicode
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/6dPOZ/src/StanBase.jl:50
┌ Warning: Environment variable CMDSTAN_HOME not set. Use set_cmdstan_home!.
└ @ StanBase ~/.julia/packages/StanBase/6dPOZ/src/StanBase.jl:50
/tmp/jl_c6pFq6/bernoulli.stan updated.
Bernoulli optimize: Error During Test at /home/pkgeval/.julia/packages/StanOptimize/APhBH/test/runtests.jl:3
Got exception outside of a @test
LoadError: The environment variable JULIA_CMDSTAN_HOME needs to be set.
Stacktrace:
[1] (::StanBase.var"#1#2")() at /home/pkgeval/.julia/packages/StanBase/6dPOZ/src/stanmodel/cmdstan_home.jl:11
[2] (::Base.var"#468#469"{StanBase.var"#1#2"})(::String) at ./env.jl:81
[3] access_env at ./env.jl:43 [inlined]
[4] get at ./env.jl:81 [inlined]
[5] get_cmdstan_home at /home/pkgeval/.julia/packages/StanBase/6dPOZ/src/stanmodel/cmdstan_home.jl:10 [inlined]
[6] OptimizeModel(::String, ::String, ::Array{Int64,1}; method::StanOptimize.Optimize, seed::StanBase.RandomSeed, init::StanBase.Init, output::StanBase.Output, tmpdir::String) at /home/pkgeval/.julia/packages/StanOptimize/APhBH/src/stanmodel/OptimizeModel.jl:52
[7] top-level scope at /home/pkgeval/.julia/packages/StanOptimize/APhBH/examples/Bernoulli/bernoulli.jl:21
[8] include(::String) at ./client.jl:439
[9] top-level scope at /home/pkgeval/.julia/packages/StanOptimize/APhBH/test/runtests.jl:4
[10] top-level scope at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Test/src/Test.jl:1114
[11] top-level scope at /home/pkgeval/.julia/packages/StanOptimize/APhBH/test/runtests.jl:4
[12] include(::String) at ./client.jl:439
[13] top-level scope at none:6
[14] eval(::Module, ::Any) at ./boot.jl:331
[15] exec_options(::Base.JLOptions) at ./client.jl:264
[16] _start() at ./client.jl:484
in expression starting at /home/pkgeval/.julia/packages/StanOptimize/APhBH/examples/Bernoulli/bernoulli.jl:21
Test Summary: | Error Total
Bernoulli optimize | 1 1
ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 1 errored, 0 broken.
in expression starting at /home/pkgeval/.julia/packages/StanOptimize/APhBH/test/runtests.jl:3
ERROR: Package StanOptimize errored during testing
Stacktrace:
[1] pkgerror(::String, ::Vararg{String,N} where N) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Types.jl:53
[2] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/Operations.jl:1503
[3] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:316
[4] test(::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:303
[5] #test#68 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[6] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:297 [inlined]
[7] #test#67 at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[8] test at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:296 [inlined]
[9] test(::String; kwargs::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[10] test(::String) at /workspace/srcdir/usr/share/julia/stdlib/v1.5/Pkg/src/API.jl:295
[11] top-level scope at none:13